Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009418

Physical Location & Seq

Genomic Coordinates Reverse (-)

66746471 .. 66749649

Gene Structure 3179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21572

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCTCTACAGAACATTGGTGCTTCCAACCGTGATGATGCCTTCTACAGGTATAAGATGCCAAGGATGATAACTAAGATTGAAGGTAGAGGAAATGGCATCAAGACTAATGTGGTTAACATGGTGGAAATCGCAAAGGCCTTGGCTAGACCTGCTTCTTATACCACCAAGTATTTTGGCTGTGAGCTTGGAGCACAGTCAAAGTTCGATGAGAAGACTGGAACTTCCCATGTGAATGGTGCTCATGACACTGCAAAGCTTGCTGGACTTCTTGAGAACTTCATTAAGAAATATGTGCAGTGCTATGGTTGTGGGAACCCTGAAACTGAGATTATCATCACTAAAACGCAGATGCTCAATCTCAAATGTGCTGCATGTGGGTTTGTGTCTGATGTTGACATGAGGGACAAGCTTACAACTTTTATCCTCAAGAATCCTCCAGAGCAGAAGAAGTCTGCCAAAGAAAAGAAAGCCATGAGGAGGGCAGACAAAGAGCAGCTTAAGGAAGGGGAGGCTGCTGATGAGGAGCAAAAGAAGCTTAAGAAGGAGGCAGCAAGAAAGAAAGGCACTTCTGGCTCCAAAGTATCAAGCAAGAAGAAAACCACCGGTTCTGATGAGGATCACTCCCCTACTCGGAGCCACGGAGATGTGATTGACCAAGCCGCTGAAGACGATGATGATGTCCAGTGGCAGACAGACACGTCCATAGAGGCAGCCAAGAAGCGAATCGAGGAGCAGTTGAGTGCTGCTACTGCTGATATGGTCATGCTTTCTACCACAGAAGAGAAGAAAAAATCTCCACCAAAGTCTCCAGAGCGTGAAAAGAAAGCTGAGGCCAAGAGTGAGAATGGTGCTGATAATGCCCATGGGAAGCTTGTTGATGAGATCAAACAATCCTTGAAAGCCGGGAGCAATAGCAGTCAGCTCAAAACCCTTTTGGGTACTCTTTCTGGTACTCCCCAAGAGAAAATGGATGCCTTACTTGAAGCCCTCTTTGAAGGTGTTGGAAAGGGGTTCTCCAAGGAGGTGACCAAGAAGATCAAGTACATTTCTGAAGCAACTATAGCCGAGGGCTCTCAGCTGACCTTGTTGCGTGGACTTGAGTCCTTCTGTGATAAGGCGAACCCTGATGCTACAAAGGAGGTGGCTTTGGTTTTGAAATCACTGTATGATGAAGATGTGCTGGAGGAAGAGTACATTATGAAGTGGTATCAGCAAGGCTTAAGCGGCAAGGCAAAAAGCTCCCAGATTTGGAAGAACATTAAGCCTTTCATTGAGTGGCTCCAGAGTGCTGAGTCGGAGACAGAAGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko04214 map03013 map04214

Pfam Domains

Protein Families

W2 eIF-5_eIF-2B

Protein Analysis

438

Amino Acids

48.45

Weight (kDa)

6.99

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-5_eIF-2B	PF01873	11 - 127	1.8e-34	Domain found in IF2B/IF5
W2	PF02020	359 - 438	2.6e-22	eIF4-gamma/eIF5/eIF2-epsilon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009418)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36730 AT1G77840
fragaria_vesca	FvH4_5g38780
malus_domestica	MD00G1104000.v1.1 MD09G1259500.v1.1 MD15G1359300.v1.1
prunus_persica	Prupe.1G506900_v2.0.a1 Prupe.3G151100_v2.0.a1
pyrus_communis	pycom08g14860 pycom09g17420 pycom15g32170
rosa_chinensis	RchiOBHm_Chr7g0240701
rosa_laevigata	RLG00000000625
rosa_multiflora	Rmu_sc0004799.1_g000002
rosa_roxburghii	Rroxscaffold_3G00219650
rosa_rugosa	Rorug07G0338400 Rorug07G0338400
rosa_samantha	Rh7AG493000 Rh7BG465000 Rh7CG511400 Rh7DG478200
rosa_wichuraiana	Rw7G041700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	700
Acc36I	ACCTGC	1 cut(s)	160
AciI	CCGC	2 cut(s)	663, 1227
AclWI	GGATC	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	687, 1074
AfaI	GTAC	4 cut(s)	943, 955, 1046, 1196
AfiI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1251
AflII	CTTAAG	3 cut(s)	500, 539, 1222
AflIII	ACRYGT	1 cut(s)	699
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	5 cut(s)	83, 901, 986, 998, 1159
AjiI	CACGTC	1 cut(s)	702
Alw21I	GWGCWC	2 cut(s)	196, 244
Alw26I	GTCTC	2 cut(s)	813, 1295
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	2 cut(s)	138, 834
ApeKI	GCWGC	6 cut(s)	371, 496, 515, 551, 713, 746
AsiGI	ACCGGT	1 cut(s)	605
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	1 cut(s)	1039
BanII	GRGCYC	1 cut(s)	1076
BarI	GAAGNNNNNNTAC	2 cut(s)	1028, 1060
BbsI	GAAGAC	2 cut(s)	221, 675
Bbv12I	GWGCWC	2 cut(s)	196, 244
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	6 cut(s)	358, 502, 508, 563, 725, 733
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	2 cut(s)	813, 1295
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	3 cut(s)	8, 46, 1062
BfrI	CTTAAG	3 cut(s)	500, 539, 1222
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 714, 747, 1228
BlsI	GCNGC	8 cut(s)	373, 498, 517, 553, 664, 715, 748, 1229
Bme1390I	CCNGG	1 cut(s)	907
BmgBI	CACGTC	1 cut(s)	702
BmiI	GGNNCC	4 cut(s)	317, 577, 638, 1283
BmrFI	CCNGG	1 cut(s)	907
BmsI	GCATC	6 cut(s)	28, 48, 108, 342, 964, 1120
BoxI	GACNNNNGTC	1 cut(s)	1102
BpiI	GAAGAC	2 cut(s)	221, 675
BplI	GAGNNNNNCTC	2 cut(s)	608, 640
BpmI	CTGGAG	4 cut(s)	423, 795, 1205, 1268
Bpu10I	CCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	3 cut(s)	293, 413, 1121
BpuMI	CCSGG	1 cut(s)	907
BsaBI	GATNNNNATC	2 cut(s)	335, 618
BsaJI	CCNNGG	6 cut(s)	62, 141, 640, 865, 1020, 1068
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	1178, 1208
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1251
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	2 cut(s)	223, 685
Bse8I	GATNNNNATC	2 cut(s)	335, 618
BseDI	CCNNGG	6 cut(s)	62, 141, 640, 865, 1020, 1068
BseGI	GGATG	2 cut(s)	72, 979
BseJI	GATNNNNATC	2 cut(s)	335, 618
BseLI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1251
BseMII	CTCAG	4 cut(s)	318, 822, 1091, 1284
BseNI	ACTGG	2 cut(s)	223, 685
BseRI	GAGGAG	3 cut(s)	493, 539, 746
BseXI	GCAGC	6 cut(s)	358, 502, 508, 563, 725, 733
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	2 cut(s)	140, 836
BshTI	ACCGGT	1 cut(s)	605
BsiHKAI	GWGCWC	2 cut(s)	196, 244
BsiSI	CCGG	2 cut(s)	606, 906
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	48, 480, 633, 1251
BsmAI	GTCTC	2 cut(s)	813, 1295
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	140, 836
Bsp1286I	GDGCHC	3 cut(s)	196, 244, 1076
Bsp143I	GATC	3 cut(s)	619, 885, 1038
Bsp19I	CCATGG	1 cut(s)	865
BspACI	CCGC	2 cut(s)	663, 1227
BspANI	GGCC	2 cut(s)	140, 836
BspCNI	CTCAG	4 cut(s)	319, 823, 1090, 1285
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	4 cut(s)	317, 577, 638, 1283
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	627
BspTI	CTTAAG	3 cut(s)	500, 539, 1222
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	2 cut(s)	223, 685
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	6 cut(s)	62, 141, 640, 865, 1020, 1068
BssMI	GATC	3 cut(s)	619, 885, 1038
BssT1I	CCWWGG	4 cut(s)	62, 141, 865, 1020
Bst4CI	ACNGT	3 cut(s)	32, 198, 1167
Bst6I	CTCTTC	3 cut(s)	777, 1185, 1302
BstAFI	CTTAAG	3 cut(s)	500, 539, 1222
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	5 cut(s)	75, 327, 831, 1077, 1293
BstDSI	CCRYGG	2 cut(s)	640, 865
BstEII	GGTNACC	1 cut(s)	1027
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	72, 979
BstKTI	GATC	3 cut(s)	622, 888, 1041
BstMAI	GTCTC	2 cut(s)	813, 1295
BstMBI	GATC	3 cut(s)	619, 885, 1038
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 752, 860, 1064, 1227
BstNSI	RCATGY	1 cut(s)	378
BstPAI	GACNNNNGTC	1 cut(s)	1102
BstPI	GGTNACC	1 cut(s)	1027
BstSCI	CCNGG	1 cut(s)	905
BstSFI	CTRYAG	3 cut(s)	8, 46, 1062
BstV1I	GCAGC	6 cut(s)	358, 502, 508, 563, 725, 733
BstV2I	GAAGAC	2 cut(s)	221, 675
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	140, 836
BtgI	CCRYGG	2 cut(s)	640, 865
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	72, 979
BtsI	GCAGTG	2 cut(s)	249, 305
BtsIMutI	CAGTG	4 cut(s)	249, 305, 692, 1163
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	605
Csp6I	GTAC	4 cut(s)	942, 954, 1045, 1195
CspAI	ACCGGT	1 cut(s)	605
CspCI	CAANNNNNGTGG	2 cut(s)	1125, 1160
CviAII	CATG	8 cut(s)	121, 230, 245, 375, 400, 475, 766, 866
CviQI	GTAC	4 cut(s)	942, 954, 1045, 1195
DdeI	CTNAG	5 cut(s)	75, 327, 831, 1077, 1293
DpnI	GATC	3 cut(s)	621, 887, 1040
DpnII	GATC	3 cut(s)	619, 885, 1038
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
Eam1104I	CTCTTC	3 cut(s)	777, 1185, 1302
EarI	CTCTTC	3 cut(s)	777, 1185, 1302
Eco130I	CCWWGG	4 cut(s)	62, 141, 865, 1020
Eco147I	AGGCCT	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	1076
Eco57I	CTGAAG	2 cut(s)	687, 1074
Eco91I	GGTNACC	1 cut(s)	1027
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	1027
EcoT14I	CCWWGG	4 cut(s)	62, 141, 865, 1020
EcoT38I	GRGCYC	1 cut(s)	1076
ErhI	CCWWGG	4 cut(s)	62, 141, 865, 1020
FaeI	CATG	8 cut(s)	124, 233, 248, 378, 403, 478, 769, 869
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	8 cut(s)	120, 229, 244, 374, 399, 474, 765, 865
Fnu4HI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 714, 747, 1228
FokI	GGATG	2 cut(s)	79, 986
FriOI	GRGCYC	1 cut(s)	1076
Fsp4HI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 714, 747, 1228
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 714, 747, 1228
GsuI	CTGGAG	4 cut(s)	423, 795, 1205, 1268
HaeIII	GGCC	2 cut(s)	140, 836
HapII	CCGG	2 cut(s)	606, 906
Hin1II	CATG	8 cut(s)	124, 233, 248, 378, 403, 478, 769, 869
HincII	GTYRAC	2 cut(s)	118, 397
HindII	GTYRAC	2 cut(s)	118, 397
HindIII	AAGCTT	4 cut(s)	257, 410, 536, 872
HinfI	GANTC	4 cut(s)	433, 726, 1103, 1295
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	606, 906
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	3 cut(s)	118, 397, 1097
Hpy188I	TCNGA	5 cut(s)	391, 613, 636, 1054, 1300
Hpy188III	TCNNGA	7 cut(s)	103, 245, 272, 430, 440, 812, 1285
Hpy8I	GTNNAC	3 cut(s)	118, 397, 1097
HpyAV	CCTTC	6 cut(s)	52, 77, 500, 538, 992, 1117
HpyCH4III	ACNGT	3 cut(s)	32, 198, 1167
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	3 cut(s)	254, 298, 374
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 752, 860, 1064, 1227
HpyF3I	CTNAG	5 cut(s)	75, 327, 831, 1077, 1293
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	8 cut(s)	124, 233, 248, 378, 403, 478, 769, 869
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	619, 885, 1038
LmnI	GCTCC	8 cut(s)	191, 526, 581, 636, 733, 909, 1247, 1287
Lsp1109I	GCAGC	6 cut(s)	358, 502, 508, 563, 725, 733
LweI	GCATC	6 cut(s)	28, 48, 108, 342, 964, 1120
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	1027
MalI	GATC	3 cut(s)	621, 887, 1040
MboI	GATC	3 cut(s)	619, 885, 1038
MhlI	GDGCHC	3 cut(s)	196, 244, 1076
MlyI	GAGTC	2 cut(s)	1112, 1304
MmeI	TCCRAC	3 cut(s)	51, 985, 1278
MseI	TTAA	6 cut(s)	117, 285, 501, 540, 1223, 1263
MslI	CAYNNNNRTG	2 cut(s)	234, 645
MspA1I	CMGCKG	2 cut(s)	665, 1081
MspCI	CTTAAG	3 cut(s)	500, 539, 1222
MspI	CCGG	2 cut(s)	606, 906
MspR9I	CCNGG	1 cut(s)	907
MwoI	GCNNNNNNNGC	8 cut(s)	152, 260, 535, 573, 752, 860, 1064, 1227
NciI	CCSGG	1 cut(s)	907
NcoI	CCATGG	1 cut(s)	865
NdeII	GATC	3 cut(s)	619, 885, 1038
NlaIII	CATG	8 cut(s)	124, 233, 248, 378, 403, 478, 769, 869
NlaIV	GGNNCC	4 cut(s)	317, 577, 638, 1283
NmeAIII	GCCGAG	1 cut(s)	1093
NmuCI	GTSAC	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	378
PagI	TCATGA	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	433, 726
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	8 cut(s)	373, 498, 517, 553, 664, 715, 748, 1229
PleI	GAGTC	2 cut(s)	1111, 1303
PpsI	GAGTC	2 cut(s)	1111, 1303
PshAI	GACNNNNGTC	1 cut(s)	1102
PspEI	GGTNACC	1 cut(s)	1027
PspN4I	GGNNCC	4 cut(s)	317, 577, 638, 1283
PvuII	CAGCTG	1 cut(s)	1081
RsaI	GTAC	4 cut(s)	943, 955, 1046, 1196
RsaNI	GTAC	4 cut(s)	942, 954, 1045, 1195
RseI	CAYNNNNRTG	2 cut(s)	234, 645
SaqAI	TTAA	6 cut(s)	117, 285, 501, 540, 1223, 1263
SatI	GCNGC	8 cut(s)	372, 497, 516, 552, 663, 714, 747, 1228
Sau3AI	GATC	3 cut(s)	619, 885, 1038
SchI	GAGTC	2 cut(s)	1112, 1304
ScrFI	CCNGG	1 cut(s)	907
SduI	GDGCHC	3 cut(s)	196, 244, 1076
SfaNI	GCATC	6 cut(s)	28, 48, 108, 342, 964, 1120
SfcI	CTRYAG	3 cut(s)	8, 46, 1062
SmiMI	CAYNNNNRTG	2 cut(s)	234, 645
SmlI	CTYRAG	6 cut(s)	272, 428, 500, 539, 1100, 1222
SmoI	CTYRAG	6 cut(s)	272, 428, 500, 539, 1100, 1222
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	663, 1227
SspMI	CTAG	1 cut(s)	147
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	905
StyI	CCWWGG	4 cut(s)	62, 141, 865, 1020
TaaI	ACNGT	3 cut(s)	32, 198, 1167
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	2 cut(s)	207, 729
TatI	WGTACW	2 cut(s)	1044, 1194
TauI	GCSGC	2 cut(s)	665, 1230
TfiI	GAWTC	2 cut(s)	433, 726
Tru1I	TTAA	6 cut(s)	117, 285, 501, 540, 1223, 1263
Tru9I	TTAA	6 cut(s)	117, 285, 501, 540, 1223, 1263
TscAI	CASTG	4 cut(s)	256, 305, 692, 1170
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	6 cut(s)	371, 496, 515, 551, 713, 746
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	271, 1188, 1217, 1261
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	4 cut(s)	256, 305, 692, 1170
Vha464I	CTTAAG	3 cut(s)	500, 539, 1222
XagI	CCTNNNNNAGG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	378
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.