FvH4_5g38780

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28679476 .. 28682309
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38780.t1

Sequence Viewer

Length: 1317 bp
ATGGCTCTACAGAACATTGGTGCTTCCAACCGTGACGATGCCTTCTATAGGTATAAGATGCCAAGGATGATAACAAAGATAGAAGGCAGAGGAAACGGCATCAAGACAAACGTGGTTAATATGGTGGAAATTGCGAAGGCCTTGGCCAGACCTGCTTCGTATACCACCAAGTATTTTGGTTGTGAGCTTGGAGCCCAGTCAAAGTTTGATGAGAAGACTGGAACGTCCCATGTTAATGGAGCTCATGACACTGCTAAGCTTGCTGGACTTCTTGAGAACTTCATTAAGAAGTATGTGCAGTGCTATGGCTGTGGGAACCCGGAGACTGAGATTATCATCACTAAGACACAGATGCTGAATCTTAAATGTGCAGCCTGTGGATTTGTGTCTGATGTTGACATGAGGGACAAGCTTACGACTTTTATCCTTAAGAATCCTCCTGAGCAGAAGAAATCTGCCAAAGAAAAGAAAGCCCTGAGGAGAGCAGACAAAGAGCAGCTCAAGGAAGGGCAAATTGCTGATGAGGAGCAAAAGAAACTTAAGAAGGAAGCGGCGAAAAAGAAAGGCACCTCCGGCTCCAAAGTATCAAGCAAGAAGAGGACCTCCGGTTCTGATGAAGATCACTCCCCTACTAGGAGCCAGGGAGATGGGATGGACCAAGCTGCTGATGACGATGATGATGTCCAGTGGCAGACAGACACATCCATTGAGGCAGCAAAGAAGCGAATCGAGGAGCAGTTGAGTGCTGTTACTGCTGATATGGTCATGCTTAATACCACTGAAGAGAAGAAAAAGTCCCCACCAAAGTCTCCAGAGCGTGAAAAGAAAGCAGAAGCCAAGAGTGAGAATGGTGTTGATGATGTCCATGGGAAGCTTGTTGATGAGATCAAGCAATCCTTGAAGGCAGGGAGCAGTGCCAGTCAGCTCAAAACCCTTTTCGGTACTCTGTGTGGTACTCCCCAAGAGAAAATGGATGCCTTACTTGAAGCCCTCTTTGAAGGTGTTGGAAAGGGGTTTGCCAAGGAGGTGAACAAGAAGATCAAGTACATCTCTGAAGCAACCAAAGCCGAGGGCTCTCAGCTGGTTTTGTTGCGTGGATTTGAGTCCTTCTGTGGTAAGGCAAACCCTGATGCTACAAAGGAGGTGGCTTTGGTTTTGAAATCGCTGTACGATGAAGATGTGCTGGAGGAGGAATACATCATGAAGTGGTATCAGGAAGGGTTAAGTGGCAAGGCTAAAAGCTCCCCTATTTGGAAGAACATTAAACCTTTCATTGAGTGGCTCCAGAGCGCTGAGTCCGAGACAGAAGAGGAGTGA

Protein Analysis

439

Amino Acids

48.49

Weight (kDa)

7.49

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 11 - 127 1.8e-34 Domain found in IF2B/IF5
W2 PF02020 360 - 438 1.8e-21 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 161
AciI CCGC 1 cut(s) 551
AcoI YGGCCR 1 cut(s) 144
AcuI CTGAAG 2 cut(s) 801, 1074
AfaI GTAC 4 cut(s) 943, 955, 1046, 1169
AfeI AGCGCT 1 cut(s) 1291
AfiI CCNNNNNNNGG 3 cut(s) 48, 633, 1251
AflII CTTAAG 2 cut(s) 428, 539
AgsI TTSAA 4 cut(s) 901, 986, 998, 1159
AjnI CCWGG 1 cut(s) 639
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 3 cut(s) 317, 813, 1295
AlwNI CAGNNNCTG 1 cut(s) 355
Aor51HI AGCGCT 1 cut(s) 1291
AoxI GGCC 2 cut(s) 138, 144
ApeKI GCWGC 4 cut(s) 371, 496, 662, 713
AspLEI GCGC 1 cut(s) 1292
AspS9I GGNCC 2 cut(s) 600, 655
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 1039
AvaII GGWCC 2 cut(s) 600, 655
AxyI CCTNAGG 1 cut(s) 476
BalI TGGCCA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 3 cut(s) 196, 244, 1076
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 383, 508, 649, 725
BccI CCATC 2 cut(s) 641, 646
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 641
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 317, 813, 1295
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 8, 46
BfoI RGCGCY 1 cut(s) 1293
BfrI CTTAAG 2 cut(s) 428, 539
BfuAI ACCTGC 1 cut(s) 160
BisI GCNGC 5 cut(s) 372, 497, 552, 663, 714
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 5 cut(s) 373, 498, 553, 664, 715
Bme1390I CCNGG 2 cut(s) 320, 641
Bme18I GGWCC 2 cut(s) 600, 655
BmgT120I GGNCC 2 cut(s) 600, 655
BmiI GGNNCC 6 cut(s) 193, 317, 568, 577, 638, 1283
BmrFI CCNGG 2 cut(s) 320, 641
BmrI ACTGGG 1 cut(s) 190
BmsI GCATC 6 cut(s) 28, 48, 108, 342, 964, 1120
BmuI ACTGGG 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 3 cut(s) 795, 1205, 1268
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 293, 485
BpuMI CCSGG 1 cut(s) 320
BsaBI GATNNNNATC 2 cut(s) 335, 618
BsaJI CCNNGG 6 cut(s) 62, 141, 640, 865, 1020, 1068
BsaWI WCCGGW 1 cut(s) 605
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 633, 1251
Bse1I ACTGG 4 cut(s) 196, 223, 685, 918
Bse21I CCTNAGG 1 cut(s) 476
Bse8I GATNNNNATC 2 cut(s) 335, 618
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 6 cut(s) 62, 141, 640, 865, 1020, 1068
BseGI GGATG 4 cut(s) 72, 657, 701, 979
BseJI GATNNNNATC 2 cut(s) 335, 618
BseLI CCNNNNNNNGG 3 cut(s) 48, 633, 1251
BseMII CTCAG 5 cut(s) 318, 432, 467, 1091, 1284
BseNI ACTGG 4 cut(s) 196, 223, 685, 918
BseRI GAGGAG 4 cut(s) 493, 539, 746, 1202
BseXI GCAGC 4 cut(s) 383, 508, 649, 725
BsgI GTGCAG 2 cut(s) 317, 390
BshFI GGCC 2 cut(s) 140, 146
BshNI GGYRCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 320, 573, 606
BslFI GGGAC 3 cut(s) 211, 419, 781
BslI CCNNNNNNNGG 3 cut(s) 48, 633, 1251
BsmAI GTCTC 3 cut(s) 317, 813, 1295
BsmFI GGGAC 3 cut(s) 211, 419, 781
BsnI GGCC 2 cut(s) 140, 146
Bsp1286I GDGCHC 3 cut(s) 196, 244, 1076
Bsp143I GATC 3 cut(s) 619, 885, 1038
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 865
BspACI CCGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 140, 146
BspCNI CTCAG 5 cut(s) 319, 433, 468, 1090, 1285
BspHI TCATGA 2 cut(s) 244, 1200
BspLI GGNNCC 6 cut(s) 193, 317, 568, 577, 638, 1283
BspMI ACCTGC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 566
BspTI CTTAAG 2 cut(s) 428, 539
BsrI ACTGG 4 cut(s) 196, 223, 685, 918
BssECI CCNNGG 6 cut(s) 62, 141, 640, 865, 1020, 1068
BssMI GATC 3 cut(s) 619, 885, 1038
BssNAI GTATAC 1 cut(s) 162
BssT1I CCWWGG 4 cut(s) 62, 141, 865, 1020
Bst1107I GTATAC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 590, 777, 1302
BstAFI CTTAAG 2 cut(s) 428, 539
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 7 cut(s) 255, 327, 342, 441, 476, 1077, 1293
BstDSI CCRYGG 1 cut(s) 865
BstENI CCTNNNNNAGG 1 cut(s) 46
BstF5I GGATG 4 cut(s) 72, 657, 701, 979
BstH2I RGCGCY 1 cut(s) 1293
BstHHI GCGC 1 cut(s) 1292
BstKTI GATC 3 cut(s) 622, 888, 1041
BstMAI GTCTC 3 cut(s) 317, 813, 1295
BstMBI GATC 3 cut(s) 619, 885, 1038
BstMWI GCNNNNNNNGC 5 cut(s) 152, 260, 573, 752, 1064
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 318, 639
BstSFI CTRYAG 2 cut(s) 8, 46
BstV1I GCAGC 4 cut(s) 383, 508, 649, 725
BstV2I GAAGAC 1 cut(s) 221
BstXI CCANNNNNNTGG 2 cut(s) 236, 647
BstZ17I GTATAC 1 cut(s) 162
Bsu36I CCTNAGG 1 cut(s) 476
BsuRI GGCC 2 cut(s) 140, 146
BtgI CCRYGG 1 cut(s) 865
BtsCI GGATG 4 cut(s) 72, 657, 701, 979
BtsI GCAGTG 3 cut(s) 249, 305, 919
BtsIMutI CAGTG 5 cut(s) 249, 305, 692, 777, 919
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 355
CciI TCATGA 2 cut(s) 244, 1200
CfoI GCGC 1 cut(s) 1292
Cfr13I GGNCC 2 cut(s) 600, 655
Csp6I GTAC 4 cut(s) 942, 954, 1045, 1168
CspCI CAANNNNNGTGG 2 cut(s) 1125, 1160
CviAII CATG 6 cut(s) 230, 245, 400, 766, 866, 1201
CviQI GTAC 4 cut(s) 942, 954, 1045, 1168
DdeI CTNAG 7 cut(s) 255, 327, 342, 441, 476, 1077, 1293
DpnI GATC 3 cut(s) 621, 887, 1040
DpnII GATC 3 cut(s) 619, 885, 1038
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 3 cut(s) 590, 777, 1302
EarI CTCTTC 3 cut(s) 590, 777, 1302
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 4 cut(s) 62, 141, 865, 1020
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 3 cut(s) 196, 244, 1076
Eco47I GGWCC 2 cut(s) 600, 655
Eco47III AGCGCT 1 cut(s) 1291
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 801, 1074
Eco81I CCTNAGG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 600
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 4 cut(s) 62, 141, 865, 1020
EcoT38I GRGCYC 3 cut(s) 196, 244, 1076
ErhI CCWWGG 4 cut(s) 62, 141, 865, 1020
FaeI CATG 6 cut(s) 233, 248, 403, 769, 869, 1204
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FaqI GGGAC 3 cut(s) 211, 419, 781
FatI CATG 6 cut(s) 229, 244, 399, 765, 865, 1200
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 5 cut(s) 372, 497, 552, 663, 714
FokI GGATG 4 cut(s) 79, 664, 688, 986
FriOI GRGCYC 3 cut(s) 196, 244, 1076
Fsp4HI GCNGC 5 cut(s) 372, 497, 552, 663, 714
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 1291
GluI GCNGC 5 cut(s) 372, 497, 552, 663, 714
GsuI CTGGAG 3 cut(s) 795, 1205, 1268
HaeII RGCGCY 1 cut(s) 1293
HaeIII GGCC 2 cut(s) 140, 146
HapII CCGG 3 cut(s) 320, 573, 606
HhaI GCGC 1 cut(s) 1292
Hin1II CATG 6 cut(s) 233, 248, 403, 769, 869, 1204
Hin6I GCGC 1 cut(s) 1290
HinP1I GCGC 1 cut(s) 1290
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 3 cut(s) 257, 410, 872
HinfI GANTC 5 cut(s) 358, 433, 726, 1103, 1295
HpaII CCGG 3 cut(s) 320, 573, 606
HphI GGTGA 1 cut(s) 1039
Hpy166II GTNNAC 3 cut(s) 162, 397, 1030
Hpy188I TCNGA 4 cut(s) 391, 613, 1054, 1300
Hpy188III TCNNGA 8 cut(s) 103, 245, 272, 440, 812, 1201, 1214, 1285
Hpy8I GTNNAC 3 cut(s) 162, 397, 1030
HpyAV CCTTC 9 cut(s) 52, 77, 130, 500, 538, 895, 992, 1117, 1211
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 111, 224
HpyCH4V TGCA 2 cut(s) 298, 371
HpyF10VI GCNNNNNNNGC 5 cut(s) 152, 260, 573, 752, 1064
HpyF3I CTNAG 7 cut(s) 255, 327, 342, 441, 476, 1077, 1293
HpySE526I ACGT 2 cut(s) 111, 224
Hsp92II CATG 6 cut(s) 233, 248, 403, 769, 869, 1204
HspAI GCGC 1 cut(s) 1290
Kzo9I GATC 3 cut(s) 619, 885, 1038
LmnI GCTCC 9 cut(s) 191, 239, 526, 581, 636, 733, 909, 1247, 1287
Lsp1109I GCAGC 4 cut(s) 383, 508, 649, 725
LweI GCATC 6 cut(s) 28, 48, 108, 342, 964, 1120
MaeI CTAG 1 cut(s) 633
MaeII ACGT 2 cut(s) 111, 224
MaeIII GTNAC 2 cut(s) 32, 748
MalI GATC 3 cut(s) 621, 887, 1040
MboI GATC 3 cut(s) 619, 885, 1038
MboII GAAGA 9 cut(s) 226, 460, 607, 629, 794, 799, 1048, 1187, 1267
MhlI GDGCHC 3 cut(s) 196, 244, 1076
MlsI TGGCCA 1 cut(s) 146
MluCI AATT 2 cut(s) 129, 513
MluNI TGGCCA 1 cut(s) 146
MlyI GAGTC 2 cut(s) 1112, 1304
MmeI TCCRAC 2 cut(s) 51, 985
Mox20I TGGCCA 1 cut(s) 146
MscI TGGCCA 1 cut(s) 146
MseI TTAA 9 cut(s) 117, 234, 285, 363, 429, 540, 771, 1223, 1263
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 1081
MspCI CTTAAG 2 cut(s) 428, 539
MspI CCGG 3 cut(s) 320, 573, 606
MspR9I CCNGG 2 cut(s) 320, 641
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 5 cut(s) 152, 260, 573, 752, 1064
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 865
NdeII GATC 3 cut(s) 619, 885, 1038
NlaIII CATG 6 cut(s) 233, 248, 403, 769, 869, 1204
NlaIV GGNNCC 6 cut(s) 193, 317, 568, 577, 638, 1283
NmeAIII GCCGAG 1 cut(s) 1093
NmuCI GTSAC 1 cut(s) 32
PagI TCATGA 2 cut(s) 244, 1200
PceI AGGCCT 1 cut(s) 140
PfeI GAWTC 3 cut(s) 358, 433, 726
PkrI GCNGC 5 cut(s) 373, 498, 553, 664, 715
PleI GAGTC 2 cut(s) 1111, 1303
PpsI GAGTC 2 cut(s) 1111, 1303
PpuMI RGGWCCY 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 6 cut(s) 193, 317, 568, 577, 638, 1283
PspPI GGNCC 2 cut(s) 600, 655
PspPPI RGGWCCY 1 cut(s) 600
PstNI CAGNNNCTG 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 1081
RsaI GTAC 4 cut(s) 943, 955, 1046, 1169
RsaNI GTAC 4 cut(s) 942, 954, 1045, 1168
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 244
SaqAI TTAA 9 cut(s) 117, 234, 285, 363, 429, 540, 771, 1223, 1263
SatI GCNGC 5 cut(s) 372, 497, 552, 663, 714
Sau3AI GATC 3 cut(s) 619, 885, 1038
Sau96I GGNCC 2 cut(s) 600, 655
SchI GAGTC 2 cut(s) 1112, 1304
ScrFI CCNGG 2 cut(s) 320, 641
SduI GDGCHC 3 cut(s) 196, 244, 1076
SfaNI GCATC 6 cut(s) 28, 48, 108, 342, 964, 1120
SfcI CTRYAG 2 cut(s) 8, 46
SinI GGWCC 2 cut(s) 600, 655
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 4 cut(s) 272, 428, 500, 539
SmoI CTYRAG 4 cut(s) 272, 428, 500, 539
Sse9I AATT 2 cut(s) 129, 513
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 1 cut(s) 551
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 244
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 318, 639
StyI CCWWGG 4 cut(s) 62, 141, 865, 1020
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 2 cut(s) 114, 227
TaqI TCGA 1 cut(s) 729
TasI AATT 2 cut(s) 129, 513
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 3 cut(s) 358, 433, 726
Tru1I TTAA 9 cut(s) 117, 234, 285, 363, 429, 540, 771, 1223, 1263
Tru9I TTAA 9 cut(s) 117, 234, 285, 363, 429, 540, 771, 1223, 1263
TscAI CASTG 5 cut(s) 256, 305, 692, 784, 919
TseFI GTSAC 1 cut(s) 32
TseI GCWGC 4 cut(s) 371, 496, 662, 713
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 5 cut(s) 271, 630, 1188, 1217, 1261
TspRI CASTG 5 cut(s) 256, 305, 692, 784, 919
Vha464I CTTAAG 2 cut(s) 428, 539
VpaK11BI GGWCC 2 cut(s) 600, 655
XagI CCTNNNNNAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.