MD09G1259500.v1.1

eukaryotic translation initiation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
33253304 .. 33256565
3262 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1259500.v1.1.491

Sequence Viewer

Length: 1320 bp
ATGGCTTTACTGAACATTGGTGCTGGGAACAGCGACGATGCCTTCTACAGGTATAAGATGCCCAGGATGGTTACCAAAATTGAGGGCCGTGGAAATGGCATCAAGACAAATATAGTCAACATGGTGGACATCGCAAAGGCCTTGGCAAGGCCCCCTGCATATACTACAAAGTATTTTGGTTGTGAACTTGGAGCCCAATCCAAATTTGATGAGAAAACTGGGACTTCTATTGTTAATGGGTCCCATGACACCGCTAAGCTAGCTGGCCTTCTTGAAAATTTTATTAAGAAATACGTCCAGTGTTATGGATGTGGCAATCCAGAAACAGAGATCTTGATTACGAAGACTCAAATGATTCAACTGAAATGTGCTGCGTGTGGTTTTGTGTCTGATGTCGACATGAGAGACAAGCTCACTACCTTCATTATTAAGAACCCACCCGAGCAGAAAAAGGGATCCAAGGACAAGAAAGCAATGAGGAGGGCTGAAAAGGAACGGTTGAAAGAAGGTGAAGCTGCTGATGAGGAGCTGAAGAAACAAAAGAAAGAGGCAAAGAAGAAGGGCACTTCTTCCTCTTCTAAGGAGGGCCCTGTGAAAGCCAGCTCTTCGAAAAAAAAAACAAGTGGATCTGATGAGGACCGCACATCACCTACTCACAGCCAGGCCGATGAGGAGGAGGCCAATGATGTTGATGATGATGATGATGATGTTCAGTGGCAAACTGATACATCACTAGAGGCAGCTCGTCAACGGATTCAAGAACAATTGAGTGCTGCGACAGCTGATATGGTAATGCTTTCAACCAATGAACCAGAGAAGCCCAAGGAAGCAACAAAGGCTGTGGAGAATGGAAACTCCACTGCTCGAGTAACACTTACTGATGAGTTGAAAAAGAATCTAGATAAAGGTATCTCAGCCAAACAGTTACAATCCCTTCTGCCGTCACTTTCAGGGTCTGCTAAGGAAAAGATGACTGCTCTTTTTGAAGCGCTATTTGGGGGCATAGAGAAAGGGTTTGCAAAGGAGGTGTCGAAGAAGATAAAGTACCTTGCTGTAGCTGCTGCACAGGATGAGGGATCCCAGTTGCTCGTGCTTCAAGCAATTGAAGGCTTCTGTGGGAAGTCAAGCTCAAGTGCATTGAAGGAGGTTGCCCTGGTTTTAAAAGCTCTCTACGATGCTGATATCTTGGAAGAAGAAACTATAGTGCAGTGGTATCAAGGTGGACTGAAGGGAGCCGGCAGGGGCTCTCAGATTTGGAAGAACACTAAACCCTTCATTGACTGGCTCCAGAGTGCTGAGTCTGAAACTGAGGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

48.01

Weight (kDa)

5.88

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF-5_eIF-2B PF01873 12 - 127 2.1e-35 Domain found in IF2B/IF5
W2 PF02020 361 - 439 9.6e-22 eIF4-gamma/eIF5/eIF2-epsilon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 396
AciI CCGC 2 cut(s) 252, 640
AclWI GGATC 5 cut(s) 450, 463, 634, 1071, 1084
AcsI RAATTY 2 cut(s) 203, 277
AcuI CTGAAG 2 cut(s) 551, 1247
AfaI GTAC 1 cut(s) 1046
AfeI AGCGCT 1 cut(s) 990
AfiI CCNNNNNNNGG 2 cut(s) 48, 147
AjnI CCWGG 3 cut(s) 62, 660, 1152
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 5 cut(s) 450, 463, 634, 1071, 1084
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 2 cut(s) 440, 864
Aor51HI AGCGCT 1 cut(s) 990
AoxI GGCC 7 cut(s) 85, 138, 149, 265, 586, 663, 678
ApaI GGGCCC 1 cut(s) 590
ApeKI GCWGC 6 cut(s) 371, 515, 740, 773, 1058, 1061
ApoI RAATTY 2 cut(s) 203, 277
ArsI GACNNNNNNTTYG 2 cut(s) 1013, 1045
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 6 cut(s) 85, 150, 240, 586, 587, 637
AsuHPI GGTGA 2 cut(s) 521, 639
AsuII TTCGAA 1 cut(s) 608
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 2 cut(s) 440, 864
AvaII GGWCC 2 cut(s) 240, 637
BaeGI GKGCMC 2 cut(s) 566, 590
BamHI GGATCC 2 cut(s) 455, 1076
BanII GRGCYC 3 cut(s) 196, 590, 1247
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BauI CACGAG 1 cut(s) 1088
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 6 cut(s) 358, 502, 752, 760, 1045, 1048
BccI CCATC 1 cut(s) 61
BceAI ACGGC 2 cut(s) 72, 925
BciT130I CCWGG 3 cut(s) 64, 662, 1154
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 3 cut(s) 260, 734, 899
BfmI CTRYAG 3 cut(s) 46, 1053, 1200
BfoI RGCGCY 1 cut(s) 992
BglII AGATCT 1 cut(s) 330
BisI GCNGC 6 cut(s) 372, 516, 741, 774, 1059, 1062
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 6 cut(s) 373, 517, 742, 775, 1060, 1063
Bme1390I CCNGG 3 cut(s) 64, 662, 1154
Bme18I GGWCC 2 cut(s) 240, 637
BmeT110I CYCGRG 2 cut(s) 440, 864
BmgT120I GGNCC 6 cut(s) 85, 150, 240, 586, 587, 637
BmiI GGNNCC 9 cut(s) 152, 193, 241, 242, 457, 588, 1078, 1234, 1286
BmrFI CCNGG 3 cut(s) 64, 662, 1154
BmrI ACTGGG 2 cut(s) 228, 1075
BmsI GCATC 4 cut(s) 28, 48, 108, 1165
BmtI GCTAGC 1 cut(s) 263
BmuI ACTGGG 2 cut(s) 228, 1075
BpiI GAAGAC 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpmI CTGGAG 1 cut(s) 1271
Bpu10I CCTNAGC 1 cut(s) 960
Bpu1102I GCTNAGC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 1114
BsaJI CCNNGG 6 cut(s) 62, 88, 141, 459, 822, 1152
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 147
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 4 cut(s) 223, 298, 1081, 1286
Bse3DI GCAATG 1 cut(s) 480
BseBI CCWGG 3 cut(s) 64, 662, 1154
BseDI CCNNGG 6 cut(s) 62, 88, 141, 459, 822, 1152
BseGI GGATG 3 cut(s) 72, 314, 1075
BseLI CCNNNNNNNGG 2 cut(s) 48, 147
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 4 cut(s) 927, 1262, 1287, 1299
BseNI ACTGG 4 cut(s) 223, 298, 1081, 1286
BseRI GAGGAG 4 cut(s) 493, 539, 686, 689
BseSI GKGCMC 2 cut(s) 566, 590
BseXI GCAGC 6 cut(s) 358, 502, 752, 760, 1045, 1048
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 1047, 1226
BshFI GGCC 7 cut(s) 87, 140, 151, 267, 588, 665, 680
BsiHKCI CYCGRG 2 cut(s) 440, 864
BsiSI CCGG 1 cut(s) 1236
BslFI GGGAC 2 cut(s) 226, 235
BslI CCNNNNNNNGG 2 cut(s) 48, 147
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 2 cut(s) 226, 235
BsnI GGCC 7 cut(s) 87, 140, 151, 267, 588, 665, 680
BsoBI CYCGRG 2 cut(s) 440, 864
Bsp119I TTCGAA 1 cut(s) 608
Bsp120I GGGCCC 1 cut(s) 586
Bsp1286I GDGCHC 4 cut(s) 196, 566, 590, 1247
Bsp143I GATC 4 cut(s) 330, 455, 626, 1076
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 2 cut(s) 252, 640
BspANI GGCC 7 cut(s) 87, 140, 151, 267, 588, 665, 680
BspCNI CTCAG 4 cut(s) 926, 1261, 1288, 1300
BspLI GGNNCC 9 cut(s) 152, 193, 241, 242, 457, 588, 1078, 1234, 1286
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 5 cut(s) 450, 463, 634, 1071, 1084
BspQI GCTCTTC 1 cut(s) 610
BspT104I TTCGAA 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 1235
BsrI ACTGG 4 cut(s) 223, 298, 1081, 1286
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 6 cut(s) 62, 88, 141, 459, 822, 1152
BssMI GATC 4 cut(s) 330, 455, 626, 1076
BssSI CACGAG 1 cut(s) 1088
BssT1I CCWWGG 3 cut(s) 141, 459, 822
Bst2BI CACGAG 1 cut(s) 1088
Bst2UI CCWGG 3 cut(s) 64, 662, 1154
Bst4CI ACNGT 2 cut(s) 498, 924
Bst6I CTCTTC 2 cut(s) 580, 610
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 4 cut(s) 261, 265, 601, 1237
BstDEI CTNAG 7 cut(s) 255, 579, 913, 960, 1248, 1296, 1308
BstDSI CCRYGG 1 cut(s) 88
BstEII GGTNACC 1 cut(s) 70
BstENI CCTNNNNNAGG 2 cut(s) 46, 145
BstF5I GGATG 3 cut(s) 72, 314, 1075
BstH2I RGCGCY 1 cut(s) 992
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 4 cut(s) 333, 458, 629, 1079
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 4 cut(s) 330, 455, 626, 1076
BstMWI GCNNNNNNNGC 4 cut(s) 260, 779, 836, 1058
BstNI CCWGG 3 cut(s) 64, 662, 1154
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 62, 660, 1152
BstSFI CTRYAG 3 cut(s) 46, 1053, 1200
BstSLI GKGCMC 2 cut(s) 566, 590
BstV1I GCAGC 6 cut(s) 358, 502, 752, 760, 1045, 1048
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 4 cut(s) 330, 455, 626, 1076
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 4 cut(s) 330, 455, 626, 1076
BsuRI GGCC 7 cut(s) 87, 140, 151, 267, 588, 665, 680
BtgI CCRYGG 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 3 cut(s) 72, 314, 1075
BtsI GCAGTG 2 cut(s) 858, 1214
BtsIMutI CAGTG 4 cut(s) 305, 719, 858, 1214
Cac8I GCNNGC 4 cut(s) 261, 265, 601, 1237
CaiI CAGNNNCTG 1 cut(s) 956
CfoI GCGC 1 cut(s) 991
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 6 cut(s) 85, 150, 240, 586, 587, 637
Csp6I GTAC 1 cut(s) 1045
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 3 cut(s) 121, 245, 400
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 7 cut(s) 255, 579, 913, 960, 1248, 1296, 1308
DpnI GATC 4 cut(s) 332, 457, 628, 1078
DpnII GATC 4 cut(s) 330, 455, 626, 1076
DraI TTTAAA 1 cut(s) 1161
Eam1104I CTCTTC 2 cut(s) 580, 610
EarI CTCTTC 2 cut(s) 580, 610
Eco130I CCWWGG 3 cut(s) 141, 459, 822
Eco147I AGGCCT 1 cut(s) 140
Eco24I GRGCYC 3 cut(s) 196, 590, 1247
Eco32I GATATC 1 cut(s) 1183
Eco47I GGWCC 2 cut(s) 240, 637
Eco47III AGCGCT 1 cut(s) 990
Eco57I CTGAAG 2 cut(s) 551, 1247
Eco88I CYCGRG 2 cut(s) 440, 864
Eco91I GGTNACC 1 cut(s) 70
EcoNI CCTNNNNNAGG 2 cut(s) 46, 145
EcoO109I RGGNCCY 4 cut(s) 150, 240, 586, 587
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 62, 660, 1152
EcoRV GATATC 1 cut(s) 1183
EcoT14I CCWWGG 3 cut(s) 141, 459, 822
EcoT38I GRGCYC 3 cut(s) 196, 590, 1247
ErhI CCWWGG 3 cut(s) 141, 459, 822
FaeI CATG 3 cut(s) 124, 248, 403
FaqI GGGAC 2 cut(s) 226, 235
FatI CATG 3 cut(s) 120, 244, 399
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 372, 516, 741, 774, 1059, 1062
FokI GGATG 3 cut(s) 79, 321, 1082
FriOI GRGCYC 3 cut(s) 196, 590, 1247
Fsp4HI GCNGC 6 cut(s) 372, 516, 741, 774, 1059, 1062
FspBI CTAG 3 cut(s) 260, 734, 899
GlaI GCGC 1 cut(s) 990
GluI GCNGC 6 cut(s) 372, 516, 741, 774, 1059, 1062
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 1271
HaeII RGCGCY 1 cut(s) 992
HaeIII GGCC 7 cut(s) 87, 140, 151, 267, 588, 665, 680
HapII CCGG 1 cut(s) 1236
HhaI GCGC 1 cut(s) 991
Hin1II CATG 3 cut(s) 124, 248, 403
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HincII GTYRAC 3 cut(s) 118, 397, 749
HindII GTYRAC 3 cut(s) 118, 397, 749
HinfI GANTC 5 cut(s) 346, 355, 754, 895, 1298
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 2 cut(s) 521, 639
Hpy166II GTNNAC 6 cut(s) 118, 127, 185, 397, 749, 1223
Hpy188I TCNGA 4 cut(s) 391, 631, 1251, 1303
Hpy188III TCNNGA 7 cut(s) 103, 272, 320, 334, 758, 899, 1288
Hpy8I GTNNAC 6 cut(s) 118, 127, 185, 397, 749, 1223
Hpy99I CGWCG 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 498, 924
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 5 cut(s) 158, 1019, 1064, 1136, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 779, 836, 1058
HpyF3I CTNAG 7 cut(s) 255, 579, 913, 960, 1248, 1296, 1308
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 3 cut(s) 124, 248, 403
HspAI GCGC 1 cut(s) 989
KflI GGGWCCC 1 cut(s) 240
KroI GCCGGC 1 cut(s) 1235
KroNI GCCGGC 1 cut(s) 1237
Kzo9I GATC 4 cut(s) 330, 455, 626, 1076
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 4 cut(s) 191, 526, 1232, 1290
Lsp1109I GCAGC 6 cut(s) 358, 502, 752, 760, 1045, 1048
LweI GCATC 4 cut(s) 28, 48, 108, 1165
MaeI CTAG 3 cut(s) 260, 734, 899
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 70, 868, 924, 942
MalI GATC 4 cut(s) 332, 457, 628, 1078
MboI GATC 4 cut(s) 330, 455, 626, 1076
MfeI CAATTG 2 cut(s) 764, 1101
MflI RGATCY 4 cut(s) 330, 455, 626, 1076
MhlI GDGCHC 4 cut(s) 196, 566, 590, 1247
MluCI AATT 5 cut(s) 78, 203, 277, 764, 1101
MlyI GAGTC 2 cut(s) 340, 1307
MroNI GCCGGC 1 cut(s) 1235
MseI TTAA 4 cut(s) 234, 285, 429, 1160
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 3 cut(s) 64, 662, 1154
MunI CAATTG 2 cut(s) 764, 1101
MvaI CCWGG 3 cut(s) 64, 662, 1154
MwoI GCNNNNNNNGC 4 cut(s) 260, 779, 836, 1058
NaeI GCCGGC 1 cut(s) 1237
NdeII GATC 4 cut(s) 330, 455, 626, 1076
NgoMIV GCCGGC 1 cut(s) 1235
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 3 cut(s) 124, 248, 403
NlaIV GGNNCC 9 cut(s) 152, 193, 241, 242, 457, 588, 1078, 1234, 1286
NmuCI GTSAC 1 cut(s) 942
NspV TTCGAA 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 864
PceI AGGCCT 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 1237
PfeI GAWTC 3 cut(s) 355, 754, 895
PkrI GCNGC 6 cut(s) 373, 517, 742, 775, 1060, 1063
PleI GAGTC 2 cut(s) 340, 1306
PpsI GAGTC 2 cut(s) 340, 1306
PpuMI RGGWCCY 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 240
Psp6I CCWGG 3 cut(s) 62, 660, 1152
PspEI GGTNACC 1 cut(s) 70
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 3 cut(s) 62, 660, 1152
PspN4I GGNNCC 9 cut(s) 152, 193, 241, 242, 457, 588, 1078, 1234, 1286
PspOMI GGGCCC 1 cut(s) 586
PspPI GGNCC 6 cut(s) 85, 150, 240, 586, 587, 637
PspPPI RGGWCCY 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 864
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 4 cut(s) 330, 455, 626, 1076
PvuII CAGCTG 1 cut(s) 782
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SalI GTCGAC 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 4 cut(s) 234, 285, 429, 1160
SatI GCNGC 6 cut(s) 372, 516, 741, 774, 1059, 1062
Sau3AI GATC 4 cut(s) 330, 455, 626, 1076
Sau96I GGNCC 6 cut(s) 85, 150, 240, 586, 587, 637
SchI GAGTC 2 cut(s) 340, 1307
ScrFI CCNGG 3 cut(s) 64, 662, 1154
SduI GDGCHC 4 cut(s) 196, 566, 590, 1247
SfaNI GCATC 4 cut(s) 28, 48, 108, 1165
SfcI CTRYAG 3 cut(s) 46, 1053, 1200
Sfr274I CTCGAG 1 cut(s) 864
SfuI TTCGAA 1 cut(s) 608
SinI GGWCC 2 cut(s) 240, 637
SlaI CTCGAG 1 cut(s) 864
SmlI CTYRAG 2 cut(s) 864, 1129
SmoI CTYRAG 2 cut(s) 864, 1129
Sse9I AATT 5 cut(s) 78, 203, 277, 764, 1101
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 2 cut(s) 252, 640
SspMI CTAG 3 cut(s) 260, 734, 899
StuI AGGCCT 1 cut(s) 140
StyD4I CCNGG 3 cut(s) 62, 660, 1152
StyI CCWWGG 3 cut(s) 141, 459, 822
TaaI ACNGT 2 cut(s) 498, 924
TaiI ACGT 1 cut(s) 297
TaqI TCGA 4 cut(s) 396, 608, 865, 1031
TasI AATT 5 cut(s) 78, 203, 277, 764, 1101
TfiI GAWTC 3 cut(s) 355, 754, 895
Tru1I TTAA 4 cut(s) 234, 285, 429, 1160
Tru9I TTAA 4 cut(s) 234, 285, 429, 1160
TscAI CASTG 4 cut(s) 305, 719, 865, 1214
TseFI GTSAC 1 cut(s) 942
TseI GCWGC 6 cut(s) 371, 515, 740, 773, 1058, 1061
Tsp45I GTSAC 1 cut(s) 942
TspDTI ATGAA 3 cut(s) 412, 822, 1264
TspGWI ACGGA 1 cut(s) 766
TspRI CASTG 4 cut(s) 305, 719, 865, 1214
VpaK11BI GGWCC 2 cut(s) 240, 637
XagI CCTNNNNNAGG 2 cut(s) 46, 145
XapI RAATTY 2 cut(s) 203, 277
XbaI TCTAGA 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 864
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 260, 734, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.