Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Forward (+)

14040918 .. 14041227

Gene Structure 310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G37010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGCTAGGCTGTGAATGGTACTTGGAAATATCTCAACAAATTTTGGATATCATCTTTGGGATACAAACGAGTGGAAGAGATCATATGGGTAAAGACGAATCAACTTCCACTCATTTGGGGATAAGTGATAATGGTAATGGGCTTTTAAGCCGTGGAATAGTTAAGAAGAAGGATTGGAGTAATGGAGTTTTGTTGGTTAGTAAAGATCCTGAGAATTTGAGGGATATTGCGTTTAGACAGTATGCGATTTTGGTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

87

Amino Acids

9.76

Weight (kDa)

5.56

Isoelectric Point (pI)

19.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	42, 217
AfaI	GTAC	1 cut(s)	23
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	42, 217
BceAI	ACGGC	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	82, 208
BspCNI	CTCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	82, 208
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	213
BstDSI	CCRYGG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	85, 211
BstMBI	GATC	2 cut(s)	82, 208
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	22
CviJI	RGCY	4 cut(s)	7, 12, 145, 153
CviKI_1	RGCY	4 cut(s)	7, 12, 145, 153
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	84, 210
DpnII	GATC	2 cut(s)	82, 208
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	52
FaiI	YATR	3 cut(s)	87, 89, 246
FauNDI	CATATG	1 cut(s)	87
FspBI	CTAG	1 cut(s)	8
HinfI	GANTC	1 cut(s)	101
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	82, 208
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	225
MaeI	CTAG	1 cut(s)	8
MalI	GATC	2 cut(s)	84, 210
MboI	GATC	2 cut(s)	82, 208
MboII	GAAGA	2 cut(s)	90, 181
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	42, 217
MnlI	CCTC	1 cut(s)	216
MseI	TTAA	3 cut(s)	149, 165, 258
NdeI	CATATG	1 cut(s)	87
NdeII	GATC	2 cut(s)	82, 208
PfeI	GAWTC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	149, 165, 258
Sau3AI	GATC	2 cut(s)	82, 208
SetI	ASST	1 cut(s)	9
SgeI	CNNG	5 cut(s)	20, 37, 84, 167, 224
Sse9I	AATT	2 cut(s)	42, 217
SspMI	CTAG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	243
TasI	AATT	2 cut(s)	42, 217
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	3 cut(s)	149, 165, 258
Tru9I	TTAA	3 cut(s)	149, 165, 258
XapI	RAATTY	2 cut(s)	42, 217
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.