Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010483.1

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Forward (+)

36123 .. 39210

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010483.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgcaggcggctggttcacgtggtgctgctgcagctgctggtgaattttggtggcagttgacagggaggaaagctccgaaccggggagagaggttatggatatttccgggggccggttcgggtattttccggccggttctggggtcttcgtcgcgggttctgggctcctgggggagagagcttcaaggtgggaggcggaggtttcgggggtttgaaggctacgaatttaggatttcaggttctccactattggcagatgtcgttcttcatcttcagtcaattcgatcagcttcatcttcagcccaagaccaccgtcgcccttctcttgtccagattgacttcgtcgttagtccgagaacgaccgccaaacatctttgtcgcaactcacagtccagtttgcagtccaaccaacatcgcccataccaatgtgaattcccagttggatttttggttttgttgcccaatttgggttcaaatgacaccggattgggtggcgagttgagggttttgaggggaaggggaagtggggaaaagggctggagcaatggggttttgttagtttccaaggacctggagaatcttagggaaattgcgtttggggagtttgtgaatttggttaaggaagagaatgaagtttccgaagaggctttggtgagagatgtgttgtatgcttgtcagggaattgatgggaagtatgtaaatttgattaatacctttgcggctaatttgattagcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

246

Amino Acids

26.94

Weight (kDa)

9.54

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	5 cut(s)	8, 154, 196, 363, 719
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	5 cut(s)	44, 224, 431, 610, 700
AcuI	CTGAAG	2 cut(s)	257, 282
AcvI	CACGTG	1 cut(s)	20
AdeI	CACNNNGTG	1 cut(s)	23
AfiI	CCNNNNNNNGG	4 cut(s)	83, 113, 140, 467
AgsI	TTSAA	3 cut(s)	185, 215, 474
AjnI	CCWGG	2 cut(s)	167, 570
AjuI	GAANNNNNNNTTGG	4 cut(s)	423, 455, 579, 611
AloI	GAACNNNNNNTCC	2 cut(s)	223, 255
AluBI	AGCT	4 cut(s)	35, 74, 181, 290
AluI	AGCT	4 cut(s)	35, 74, 181, 290
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	111, 131
ApeKI	GCWGC	4 cut(s)	26, 29, 32, 35
ApoI	RAATTY	5 cut(s)	44, 224, 431, 610, 700
AseI	ATTAAT	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	111, 568
AsuC2I	CCSGG	2 cut(s)	83, 108
AsuHPI	GGTGA	2 cut(s)	53, 664
AvaII	GGWCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	167
BbrPI	CACGTG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	13, 16, 22, 44
BccI	CCATC	1 cut(s)	680
BciT130I	CCWGG	2 cut(s)	169, 572
BcnI	CCSGG	2 cut(s)	83, 108
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	6 cut(s)	9, 27, 30, 33, 36, 720
BlsI	GCNGC	6 cut(s)	10, 28, 31, 34, 37, 721
Bme1390I	CCNGG	4 cut(s)	83, 108, 169, 572
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	111, 568
BmiI	GGNNCC	2 cut(s)	112, 166
BmrFI	CCNGG	4 cut(s)	83, 108, 169, 572
BmrI	ACTGGG	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	431
BoxI	GACNNNNGTC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpmI	CTGGAG	2 cut(s)	559, 593
BpuMI	CCSGG	2 cut(s)	83, 108
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	4 cut(s)	82, 107, 168, 564
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 113, 140, 467
Bse118I	RCCGGY	2 cut(s)	113, 133
Bse1I	ACTGG	2 cut(s)	393, 437
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	169, 572
BseDI	CCNNGG	4 cut(s)	82, 107, 168, 564
BseLI	CCNNNNNNNGG	4 cut(s)	83, 113, 140, 467
BseMI	GCAATG	1 cut(s)	550
BseNI	ACTGG	2 cut(s)	393, 437
BseX3I	CGGCCG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	13, 16, 22, 44
Bsh1236I	CGCG	1 cut(s)	154
Bsh1285I	CGRYCG	2 cut(s)	134, 363
BshFI	GGCC	2 cut(s)	113, 133
BsiEI	CGRYCG	2 cut(s)	134, 363
BsiSI	CCGG	6 cut(s)	82, 107, 114, 130, 134, 483
BslI	CCNNNNNNNGG	4 cut(s)	83, 113, 140, 467
BsnI	GGCC	2 cut(s)	113, 133
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	284
BspACI	CCGC	5 cut(s)	8, 154, 196, 363, 719
BspANI	GGCC	2 cut(s)	113, 133
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	112, 166
BspMAI	CTGCAG	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	2 cut(s)	113, 133
BsrI	ACTGG	2 cut(s)	393, 437
BssAI	RCCGGY	2 cut(s)	113, 133
BssECI	CCNNGG	4 cut(s)	82, 107, 168, 564
BssMI	GATC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	169, 572
Bst4CI	ACNGT	2 cut(s)	314, 390
Bst6I	CTCTTC	2 cut(s)	618, 636
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	581
BstFNI	CGCG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMCI	CGRYCG	2 cut(s)	134, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 35
BstNI	CCWGG	2 cut(s)	169, 572
BstPAI	GACNNNNGTC	1 cut(s)	312
BstSCI	CCNGG	4 cut(s)	81, 106, 167, 570
BstSFI	CTRYAG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	154
BstV1I	GCAGC	4 cut(s)	13, 16, 22, 44
BstV2I	GAAGAC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstZI	CGGCCG	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	113, 133
BtgZI	GCGATG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr10I	RCCGGY	2 cut(s)	113, 133
Cfr13I	GGNCC	2 cut(s)	111, 568
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
DraIII	CACNNNGTG	1 cut(s)	23
EaeI	YGGCCR	1 cut(s)	131
EagI	CGGCCG	1 cut(s)	131
Eam1104I	CTCTTC	2 cut(s)	618, 636
EarI	CTCTTC	2 cut(s)	618, 636
EciI	GGCGGA	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	257, 282
Eco72I	CACGTG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	167, 570
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	564
FaiI	YATR	6 cut(s)	97, 421, 669, 696, 737, 739
FauI	CCCGC	1 cut(s)	147
FauNDI	CATATG	1 cut(s)	737
Fnu4HI	GCNGC	6 cut(s)	9, 27, 30, 33, 36, 720
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	6 cut(s)	9, 27, 30, 33, 36, 720
GluI	GCNGC	6 cut(s)	9, 27, 30, 33, 36, 720
GsuI	CTGGAG	2 cut(s)	559, 593
HaeIII	GGCC	2 cut(s)	113, 133
HapII	CCGG	6 cut(s)	82, 107, 114, 130, 134, 483
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	6 cut(s)	82, 107, 114, 130, 134, 483
HphI	GGTGA	2 cut(s)	53, 664
Hpy166II	GTNNAC	2 cut(s)	17, 60
Hpy188I	TCNGA	3 cut(s)	78, 354, 640
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	2 cut(s)	17, 60
Hpy99I	CGWCG	3 cut(s)	154, 318, 347
HpyAV	CCTTC	3 cut(s)	209, 330, 510
HpyCH4III	ACNGT	2 cut(s)	314, 390
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	4, 32, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 35
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	3 cut(s)	79, 170, 540
Lsp1109I	GCAGC	4 cut(s)	13, 16, 22, 44
MaeII	ACGT	1 cut(s)	19
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	6 cut(s)	138, 257, 263, 288, 635, 653
MhlI	GDGCHC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	421, 429
MnlI	CCTC	7 cut(s)	60, 84, 186, 192, 495, 504, 637
MseI	TTAA	2 cut(s)	618, 708
MslI	CAYNNNNRTG	1 cut(s)	424
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	6 cut(s)	82, 107, 114, 130, 134, 483
MspR9I	CCNGG	4 cut(s)	83, 108, 169, 572
MvaI	CCWGG	2 cut(s)	169, 572
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	32, 35
NciI	CCSGG	2 cut(s)	83, 108
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	112, 166
PfeI	GAWTC	1 cut(s)	577
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	10, 28, 31, 34, 37, 721
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
Ppu21I	YACGTR	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	568
PshAI	GACNNNNGTC	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	2 cut(s)	167, 570
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	167, 570
PspN4I	GGNNCC	2 cut(s)	112, 166
PspPI	GGNCC	2 cut(s)	111, 568
PspPPI	RGGWCCY	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	618, 708
SatI	GCNGC	6 cut(s)	9, 27, 30, 33, 36, 720
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	2 cut(s)	111, 568
ScrFI	CCNGG	4 cut(s)	83, 108, 169, 572
SduI	GDGCHC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	424
SsiI	CCGC	5 cut(s)	8, 154, 196, 363, 719
StyD4I	CCNGG	4 cut(s)	81, 106, 167, 570
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	314, 390
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	283
TauI	GCSGC	2 cut(s)	11, 722
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	618, 708
Tru9I	TTAA	2 cut(s)	618, 708
TseI	GCWGC	4 cut(s)	26, 29, 32, 35
TspDTI	ATGAA	3 cut(s)	257, 282, 645
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	568
VspI	ATTAAT	1 cut(s)	708
XapI	RAATTY	5 cut(s)	44, 224, 431, 610, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.