Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Forward (+)

58807306 .. 58809374

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGCCACTACCCACCTCAACCGGCCCATCCGAGTTCCGCCCCATCCAACCCGAAGACCACCCTTCGCCCGCCCTCTTCGTGGCCGTCCTCCCCACCAAAAGGAAGCCAAAGGAGATCCGCCATGGCAGATCCGGGAAGTGGGGAAAAGGGCTGGAGCAATGGGGTTTTGTTAGTTTCCAAGGACCCGGAGAATCTCGGGAAATTACGTTTAGGGAGTTTGTGAATTTGGTTAAGGAAGAGAATGAAGTTTCCGAAGAGGCTTTGGTGAGAGATGTGTTGTATGCTTGTCGTGGAATTGATGGGAAGTATCTAAATTTGATTAGTACCTTTGTGACTAATTTGATTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

6.74

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	40, 72, 121
AclWI	GGATC	2 cut(s)	112, 126
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	226, 316
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	82, 102, 141
AlwI	GGATC	2 cut(s)	112, 126
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	2 cut(s)	25, 84
ApoI	RAATTY	2 cut(s)	226, 316
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	26, 185
AsuC2I	CCSGG	2 cut(s)	136, 189
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	63
BccI	CCATC	3 cut(s)	37, 53, 296
BceAI	ACGGC	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	136, 189
BfoI	RGCGCY	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	136, 189
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	26, 185
BmiI	GGNNCC	2 cut(s)	6, 187
BmrFI	CCNGG	2 cut(s)	136, 189
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	136, 189
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	124, 181
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 102, 141
Bse118I	RCCGGY	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	124, 181
BseGI	GGATG	2 cut(s)	29, 45
BseLI	CCNNNNNNNGG	3 cut(s)	82, 102, 141
BseMI	GCAATG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	27, 86
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	3 cut(s)	24, 135, 189
BslI	CCNNNNNNNGG	3 cut(s)	82, 102, 141
BsnI	GGCC	2 cut(s)	27, 86
BsoBI	CYCGRG	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	117, 131
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	3 cut(s)	40, 72, 121
BspANI	GGCC	2 cut(s)	27, 86
BspLI	GGNNCC	2 cut(s)	6, 187
BspPI	GGATC	2 cut(s)	112, 126
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	167
BsrFI	RCCGGY	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	124, 181
BssMI	GATC	2 cut(s)	117, 131
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	124, 181
Bst6I	CTCTTC	3 cut(s)	83, 234, 252
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	29, 45
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	120, 134
BstMBI	GATC	2 cut(s)	117, 131
BstSCI	CCNGG	2 cut(s)	134, 187
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	117, 131
BstYI	RGATCY	2 cut(s)	117, 131
BsuRI	GGCC	2 cut(s)	27, 86
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	29, 45
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	26, 185
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	27, 86, 109, 154, 263
CviKI_1	RGCY	5 cut(s)	27, 86, 109, 154, 263
CviQI	GTAC	1 cut(s)	327
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	119, 133
DpnII	GATC	2 cut(s)	117, 131
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	3 cut(s)	83, 234, 252
EarI	CTCTTC	3 cut(s)	83, 234, 252
EciI	GGCGGA	2 cut(s)	29, 110
Eco130I	CCWWGG	2 cut(s)	124, 181
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	185
EcoT14I	CCWWGG	2 cut(s)	124, 181
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	124, 181
FaeI	CATG	1 cut(s)	128
FaiI	YATR	4 cut(s)	126, 285, 353, 355
FatI	CATG	1 cut(s)	124
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	353
FokI	GGATG	2 cut(s)	16, 32
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	27, 86
HapII	CCGG	3 cut(s)	24, 135, 189
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	24, 135, 189
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	34, 256
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	209
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	117, 131
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	4 cut(s)	37, 140, 148, 202
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	2 cut(s)	119, 133
MboI	GATC	2 cut(s)	117, 131
MboII	GAAGA	4 cut(s)	68, 70, 251, 269
MflI	RGATCY	2 cut(s)	117, 131
MluCI	AATT	5 cut(s)	204, 226, 297, 316, 340
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	4 cut(s)	28, 86, 101, 253
MseI	TTAA	2 cut(s)	234, 348
MspI	CCGG	3 cut(s)	24, 135, 189
MspR9I	CCNGG	2 cut(s)	136, 189
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	136, 189
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	2 cut(s)	117, 131
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	6, 187
NmuCI	GTSAC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	134
PluTI	GGCGCC	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	6, 187
PspPI	GGNCC	2 cut(s)	26, 185
PspPPI	RGGWCCY	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	117, 131
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	234, 348
Sau3AI	GATC	2 cut(s)	117, 131
Sau96I	GGNCC	2 cut(s)	26, 185
ScrFI	CCNGG	2 cut(s)	136, 189
SetI	ASST	3 cut(s)	20, 212, 332
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	204, 226, 297, 316, 340
SsiI	CCGC	3 cut(s)	40, 72, 121
SspDI	GGCGCC	1 cut(s)	4
StyD4I	CCNGG	2 cut(s)	134, 187
StyI	CCWWGG	2 cut(s)	124, 181
TaiI	ACGT	1 cut(s)	212
TasI	AATT	5 cut(s)	204, 226, 297, 316, 340
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	234, 348
Tru9I	TTAA	2 cut(s)	234, 348
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	226, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.