Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000255.1

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Forward (+)

39218 .. 39658

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000255.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ctgacttcaagattgactcactccgacatcgccccagacgccgctgccatcgccgagtccaccaaacgccgactcgccactcaaggtaagtcctcccaagccctaactttcgccaacctttatactaagttcgcatgcaaaacgggcccggaaagtgtaaataacaagtgggcagttctttatttgcttaagattatatcggaggatcgaaaaattgtgaattcccagttggattcttcagttttgttgcccaatttgggtttaaacaacaccggatcgggcggcgagtcgagggttttggggggaaggagaagtggggaaaagggctggagcaatggggttttgttagtttccaaggacccggagaatctcggggaaattgcgtttagggagtttgtgaatttggttaagagaatgaagtttccgaataggctttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

9.94

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 282
AclWI	GGATC	2 cut(s)	213, 283
AcsI	RAATTY	2 cut(s)	220, 400
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AlwI	GGATC	2 cut(s)	213, 283
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	145
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	220, 400
AspS9I	GGNCC	3 cut(s)	145, 146, 358
AsuC2I	CCSGG	2 cut(s)	149, 362
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	56
BcnI	CCSGG	2 cut(s)	149, 362
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	42, 45, 283
BlsI	GCNGC	3 cut(s)	43, 46, 284
Bme1390I	CCNGG	2 cut(s)	149, 362
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	3 cut(s)	145, 146, 358
BmiI	GGNNCC	2 cut(s)	147, 360
BmrFI	CCNGG	2 cut(s)	149, 362
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	149, 362
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	354
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	149, 273, 362
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	205, 275
BspACI	CCGC	2 cut(s)	42, 282
BspANI	GGCC	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	147, 360
BspPI	GGATC	2 cut(s)	213, 283
BspTI	CTTAAG	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	2 cut(s)	205, 275
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	208, 278
BstMBI	GATC	2 cut(s)	205, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 50, 144
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	2 cut(s)	147, 360
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	2 cut(s)	13, 34
Cac8I	GCNNGC	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	145, 146, 358
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	135
CviJI	RGCY	4 cut(s)	101, 147, 327, 433
CviKI_1	RGCY	4 cut(s)	101, 147, 327, 433
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	2 cut(s)	207, 277
DpnII	GATC	2 cut(s)	205, 275
DraI	TTTAAA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	138
FaiI	YATR	3 cut(s)	123, 136, 197
FatI	CATG	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	42, 45, 283
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	42, 45, 283
GluI	GCNGC	3 cut(s)	42, 45, 283
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	149, 273, 362
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	138
HinfI	GANTC	6 cut(s)	16, 56, 72, 233, 287, 367
HpaII	CCGG	3 cut(s)	149, 273, 362
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	3 cut(s)	25, 202, 426
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 50, 144
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	205, 275
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	6 cut(s)	48, 162, 239, 286, 313, 375
Lsp1109I	GCAGC	1 cut(s)	31
MalI	GATC	2 cut(s)	207, 277
MboI	GATC	2 cut(s)	205, 275
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	5 cut(s)	213, 220, 253, 378, 400
MlyI	GAGTC	4 cut(s)	10, 65, 66, 296
MmeI	TCCRAC	2 cut(s)	48, 210
MnlI	CCTC	3 cut(s)	103, 196, 285
MseI	TTAA	3 cut(s)	189, 263, 408
MspA1I	CMGCKG	1 cut(s)	44
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	149, 273, 362
MspR9I	CCNGG	2 cut(s)	149, 362
MssI	GTTTAAAC	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	38, 50, 144
NciI	CCSGG	2 cut(s)	149, 362
NdeII	GATC	2 cut(s)	205, 275
NlaIII	CATG	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	147, 360
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	233, 367
PkrI	GCNGC	3 cut(s)	43, 46, 284
PleI	GAGTC	4 cut(s)	10, 64, 66, 295
PmeI	GTTTAAAC	1 cut(s)	264
PpsI	GAGTC	4 cut(s)	10, 64, 66, 295
PpuMI	RGGWCCY	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	147, 360
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	3 cut(s)	145, 146, 358
PspPPI	RGGWCCY	1 cut(s)	358
SaqAI	TTAA	3 cut(s)	189, 263, 408
SatI	GCNGC	3 cut(s)	42, 45, 283
Sau3AI	GATC	2 cut(s)	205, 275
Sau96I	GGNCC	3 cut(s)	145, 146, 358
SchI	GAGTC	4 cut(s)	10, 65, 66, 296
ScrFI	CCNGG	2 cut(s)	149, 362
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	2 cut(s)	88, 120
SinI	GGWCC	1 cut(s)	358
SmlI	CTYRAG	2 cut(s)	81, 188
SmoI	CTYRAG	2 cut(s)	81, 188
SphI	GCATGC	1 cut(s)	138
Sse9I	AATT	5 cut(s)	213, 220, 253, 378, 400
SsiI	CCGC	2 cut(s)	42, 282
StyD4I	CCNGG	2 cut(s)	147, 360
StyI	CCWWGG	1 cut(s)	354
TaqI	TCGA	2 cut(s)	208, 290
TasI	AATT	5 cut(s)	213, 220, 253, 378, 400
TauI	GCSGC	2 cut(s)	44, 285
TfiI	GAWTC	2 cut(s)	233, 367
Tru1I	TTAA	3 cut(s)	189, 263, 408
Tru9I	TTAA	3 cut(s)	189, 263, 408
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	431
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	220, 400
XceI	RCATGY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.