Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Forward (+)

2457671 .. 2458246

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022515

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTCGAGTCCACCAAACGCCGACTCGCCACTCAAGGTAAGTCCTCGCAAGCCCTAACTTTCGCCGACCTTTATACTAAGTTCGCATCCAAAACGGGCCCCGAAAGTGTAAATAACAAGTGGGCAGTTCTTTATTTGCTTAAGATTATATTGGAGGATCGAAAGAGTGTGAATTCCCAGTTGGATTCTTCGGTTTTGTTGCCCAATTTGGGTTTAAACAACGCCGGATCAGGCGGCGAGTTGACGGTTTTGGGGGGAAGGGGAAGTGGGGGAAAGGGCTGGAGCAATGGGGATTTGTTAGTTTCCAAGGACCCGGAGAATCTCGGGGAAATTGCGTTTAGAGAGTTTGTGAATTTGGTTAAGGAAGAGAATGAAGTTTCCCAAGAGGCTTTGGTGAGAGATGTGTTGTATGCTTGTCAGGGAATTGATGGGAATCTAAAGTTTTCGCTGTTGCATTTGCTGTACTTGCTGCTGGTGTTGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

163

Amino Acids

17.68

Weight (kDa)

5.87

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	165, 235
AcsI	RAATTY	2 cut(s)	172, 352
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	209
AflII	CTTAAG	1 cut(s)	140
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AlwI	GGATC	2 cut(s)	165, 235
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	97
ApaI	GGGCCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	2 cut(s)	172, 352
AspS9I	GGNCC	3 cut(s)	97, 98, 310
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	1 cut(s)	422
BcnI	CCSGG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	235, 470
BlsI	GCNGC	2 cut(s)	236, 471
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	97, 98, 310
BmiI	GGNNCC	3 cut(s)	99, 100, 312
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	95
BmuI	ACTGGG	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	292
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	456
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	225, 314
BslI	CCNNNNNNNGG	1 cut(s)	209
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	157, 227
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	99, 100, 312
BspPI	GGATC	2 cut(s)	165, 235
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	157, 227
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	160, 230
BstMBI	GATC	2 cut(s)	157, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	97, 98, 310
Csp6I	GTAC	1 cut(s)	463
CviJI	RGCY	4 cut(s)	53, 99, 279, 389
CviKI_1	RGCY	4 cut(s)	53, 99, 279, 389
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	159, 229
DpnII	GATC	2 cut(s)	157, 227
DraI	TTTAAA	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	2 cut(s)	98, 310
EcoRI	GAATTC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	306
FaiI	YATR	3 cut(s)	75, 149, 411
Fnu4HI	GCNGC	2 cut(s)	235, 470
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	2 cut(s)	235, 470
GluI	GCNGC	2 cut(s)	235, 470
GsuI	CTGGAG	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	2 cut(s)	225, 314
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	5 cut(s)	8, 24, 185, 319, 433
HpaII	CCGG	2 cut(s)	225, 314
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	12, 243
Hpy8I	GTNNAC	2 cut(s)	12, 243
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	157, 227
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	7 cut(s)	191, 216, 238, 265, 327, 404, 458
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	1 cut(s)	95
MalI	GATC	2 cut(s)	159, 229
MboI	GATC	2 cut(s)	157, 227
MboII	GAAGA	2 cut(s)	180, 377
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	5 cut(s)	172, 205, 330, 352, 423
MlyI	GAGTC	2 cut(s)	17, 18
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	55, 148, 379
MseI	TTAA	3 cut(s)	141, 215, 360
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	2 cut(s)	225, 314
MspR9I	CCNGG	1 cut(s)	314
MssI	GTTTAAAC	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	466
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	2 cut(s)	157, 227
NlaIV	GGNNCC	3 cut(s)	99, 100, 312
PfeI	GAWTC	3 cut(s)	185, 319, 433
PkrI	GCNGC	2 cut(s)	236, 471
PleI	GAGTC	2 cut(s)	16, 18
PmeI	GTTTAAAC	1 cut(s)	216
PpsI	GAGTC	2 cut(s)	16, 18
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	99, 100, 312
PspOMI	GGGCCC	1 cut(s)	97
PspPI	GGNCC	3 cut(s)	97, 98, 310
PspPPI	RGGWCCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	3 cut(s)	141, 215, 360
SatI	GCNGC	2 cut(s)	235, 470
Sau3AI	GATC	2 cut(s)	157, 227
Sau96I	GGNCC	3 cut(s)	97, 98, 310
SchI	GAGTC	2 cut(s)	17, 18
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	2 cut(s)	40, 72
SfaNI	GCATC	1 cut(s)	95
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	33, 140
SmoI	CTYRAG	2 cut(s)	33, 140
Sse9I	AATT	5 cut(s)	172, 205, 330, 352, 423
SsiI	CCGC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	6, 160
TasI	AATT	5 cut(s)	172, 205, 330, 352, 423
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	3 cut(s)	185, 319, 433
Tru1I	TTAA	3 cut(s)	141, 215, 360
Tru9I	TTAA	3 cut(s)	141, 215, 360
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	1 cut(s)	387
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	2 cut(s)	172, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.