Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010840

Physical Location & Seq

Genomic Coordinates Reverse (-)

31245415 .. 31245816

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCCGACTCGCCACTCAAGGGGAAGTGGGGAAAAGGGTTGGTGCAATGGGGTTTTGTTAGTTTCCAAGGACTCGGAGAATCTCGGGGAAATTGCATTTAGGGAGTTTGTGAATTTGGTTAAGGAAGAGAATGAAGTTTCCAAAGAGGCTTTGGTGAGAGATGTGTTGTATGCTTATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005815 GO:0005819 GO:0005856 GO:0005874 GO:0005881 GO:0005886 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008150 GO:0008275 GO:0009605 GO:0009607 GO:0009624 GO:0009898 GO:0009987 GO:0010638 GO:0010968 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0031110 GO:0031112 GO:0031113 GO:0031116 GO:0031122 GO:0031334 GO:0031967 GO:0031975 GO:0032153 GO:0032155 GO:0032271 GO:0032273 GO:0032886 GO:0032991 GO:0033043 GO:0034622 GO:0043015 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044450 GO:0044459 GO:0044464 GO:0046785 GO:0048285 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051225 GO:0051258 GO:0051321 GO:0051415 GO:0051418 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0055028 GO:0065003 GO:0065007 GO:0070507 GO:0070925 GO:0071840 GO:0071944 GO:0090063 GO:0090307 GO:0097435 GO:0098552 GO:0098562 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140014 GO:1902850 GO:1902903 GO:1902905 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

60

Amino Acids

6.83

Weight (kDa)

5.75

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G37010
rosa_chinensis	RchiOBHm_Chr3g0479271
rosa_laevigata	RLG00000000856 RLG00000019780 RLG00000022515
rosa_multiflora	Rmu_sc0002978.1_g000002 Rmu_sc0010483.1_g000015 Rmu_ssc0000255.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107120 Rroxscaffold_3G00265410 Rroxscaffold_5G00353450
rosa_rugosa	Rorug03G0173800 Rorug03G0173900 Rorug03G0174000 Rorug05G0574400
rosa_samantha	Rh3AG225000 Rh3BG257500 Rh3DG249400 Rh4AG368200
rosa_wichuraiana	Rw3G020120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	120
CviJI	RGCY	1 cut(s)	149
CviKI_1	RGCY	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	83
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaiI	YATR	1 cut(s)	171
HinfI	GANTC	3 cut(s)	7, 71, 79
HphI	GGTGA	1 cut(s)	166
Hpy188I	TCNGA	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	45, 95
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	2 cut(s)	90, 112
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	1 cut(s)	139
MseI	TTAA	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	79
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	120
SchI	GAGTC	1 cut(s)	65
SgeI	CNNG	6 cut(s)	21, 30, 79, 85, 95, 97
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	2 cut(s)	90, 112
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	2 cut(s)	90, 112
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	147
XapI	RAATTY	1 cut(s)	112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.