AT1G42560

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010739
Physical Location & Seq
Reverse (-)
15980135 .. 15983571
3437 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G42560.1

Sequence Viewer

Length: 1383 bp
ATGGCTGGAGGTGGTGGTGGAGGAGGTGGCGAAGGTCCAAGACAGCTAGACCAGACCCCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTGATCTCCATTATTTTGGAACTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAAGCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACATTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCTTTTTGTGGTCCATATGATGGACCTAGTGAAGATGATCGTAAAAAGCTCAAGAAAACAGACCATGCAATGCGTATTCTCTACTCTGTTCAACGTCGTTCTTTGGCCGACGCTCCTCCAGTAAATTGCAAGAAAGATTATGTCGCACTTATATCATTAAACGCATTACATCAAGTGCATATATTCATATTCTTCTTGGCCGTGTTCCATGTTATATATAGTGCTATAACCATGATGCTTGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGAAATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACATGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTATGTGCTTCTTCCGTCAAATACTTAGATCAGTGAGGAAGTCTGATTACTTGACAATGCGACATGGATTCATAAGTGTTCATTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGACGACTTCAAGGTGGTTGTAGGAATAAGACCCGAGCTTTGGGCCTTTGTAATGTTGTTTTTACTCTTCGATGTTCACGGATGGTATGTTACTGCCGTAATCACCATGATTCCTCCTCTATTAACACTAGCCATAGGAACAAAGCTACAAGCCATTATATCGTACATGGCATTGGAGATTCAAGAGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGTTTGAAAAACCCGATCTAGTACTTCATATGATCCACTTCGTTCTGTTTCAGAATGCTTTTGAGATAACTTATTTTTTTTGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACCATTTTGGCCTTATAATCATTCGTGTCTGCCTAGGGGTGGGAGTACAATTCCTATGCAGTTATATCACATTGCCCCTTTACGCTCTCGTCACTCAGATGGGATCCACAATGAAGCGATCAGTGTTTGATGAGCAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGAATGAAAAGTGA

Protein Analysis

460

Amino Acids

53.21

Weight (kDa)

9.25

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 14 - 459 7.1e-199 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 778
AccB7I CCANNNNNTGG 1 cut(s) 314
AclWI GGATC 4 cut(s) 599, 1096, 1287, 1300
AcoI YGGCCR 4 cut(s) 241, 283, 399, 492
AcsI RAATTY 1 cut(s) 677
AfaI GTAC 4 cut(s) 809, 992, 1092, 1236
AfiI CCNNNNNNNGG 5 cut(s) 63, 64, 314, 867, 1228
AflIII ACRYGT 1 cut(s) 652
AgsI TTSAA 8 cut(s) 176, 386, 803, 838, 1010, 1031, 1076, 1332
AjnI CCWGG 1 cut(s) 781
AluBI AGCT 7 cut(s) 46, 167, 179, 202, 343, 865, 973
AluI AGCT 7 cut(s) 46, 167, 179, 202, 343, 865, 973
Alw26I GTCTC 3 cut(s) 626, 1009, 1057
AlwI GGATC 4 cut(s) 599, 1096, 1287, 1300
Ama87I CYCGRG 1 cut(s) 860
AoxI GGCC 7 cut(s) 66, 241, 283, 399, 492, 870, 1198
ApoI RAATTY 1 cut(s) 677
ArsI GACNNNNNNTTYG 2 cut(s) 849, 881
AspA2I CCTAGG 1 cut(s) 1222
AspS9I GGNCC 6 cut(s) 35, 66, 305, 317, 870, 1176
AsuHPI GGTGA 2 cut(s) 922, 1181
AsuII TTCGAA 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 860
AvaII GGWCC 4 cut(s) 35, 305, 317, 1176
AvrII CCTAGG 1 cut(s) 1222
BalI TGGCCA 1 cut(s) 243
BamHI GGATCC 1 cut(s) 1292
BanI GGYRCC 1 cut(s) 778
BarI GAAGNNNNNNTAC 2 cut(s) 722, 754
BbsI GAAGAC 1 cut(s) 834
BccI CCATC 5 cut(s) 280, 308, 616, 903, 1282
BceAI ACGGC 4 cut(s) 53, 298, 479, 908
BciT130I CCWGG 1 cut(s) 783
BcoDI GTCTC 3 cut(s) 626, 1009, 1057
BfaI CTAG 6 cut(s) 47, 321, 669, 956, 1088, 1223
BfmI CTRYAG 1 cut(s) 75
BglII AGATCT 1 cut(s) 818
BlnI CCTAGG 1 cut(s) 1222
BmcAI AGTACT 1 cut(s) 1092
Bme1390I CCNGG 1 cut(s) 783
Bme18I GGWCC 4 cut(s) 35, 305, 317, 1176
BmeT110I CYCGRG 1 cut(s) 860
BmgT120I GGNCC 6 cut(s) 35, 66, 305, 317, 870, 1176
BmiI GGNNCC 2 cut(s) 780, 1294
BmrFI CCNGG 1 cut(s) 783
BmsI GCATC 2 cut(s) 519, 1026
BmtI GCTAGC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 834
BpmI CTGGAG 2 cut(s) 27, 396
Bpu10I CCTNAGC 1 cut(s) 1172
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 2 cut(s) 203, 329
BsaJI CCNNGG 1 cut(s) 1222
Bsc4I CCNNNNNNNGG 5 cut(s) 63, 64, 314, 867, 1228
Bse1I ACTGG 2 cut(s) 413, 1040
Bse3DI GCAATG 4 cut(s) 252, 297, 369, 1259
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 1 cut(s) 1222
BseGI GGATG 3 cut(s) 579, 914, 1041
BseLI CCNNNNNNNGG 5 cut(s) 63, 64, 314, 867, 1228
BseMI GCAATG 4 cut(s) 252, 297, 369, 1259
BseMII CTCAG 2 cut(s) 1068, 1298
BseNI ACTGG 2 cut(s) 413, 1040
BseRI GAGGAG 3 cut(s) 36, 399, 933
BshFI GGCC 7 cut(s) 68, 243, 285, 401, 494, 872, 1200
BshNI GGYRCC 1 cut(s) 778
BsiHKCI CYCGRG 1 cut(s) 860
BslI CCNNNNNNNGG 5 cut(s) 63, 64, 314, 867, 1228
BsmAI GTCTC 3 cut(s) 626, 1009, 1057
BsmBI CGTCTC 1 cut(s) 1057
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 7 cut(s) 68, 243, 285, 401, 494, 872, 1200
BsoBI CYCGRG 1 cut(s) 860
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
BspANI GGCC 7 cut(s) 68, 243, 285, 401, 494, 872, 1200
BspCNI CTCAG 2 cut(s) 1067, 1297
BspLI GGNNCC 2 cut(s) 780, 1294
BspOI GCTAGC 1 cut(s) 672
BspPI GGATC 4 cut(s) 599, 1096, 1287, 1300
BspQI GCTCTTC 1 cut(s) 532
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 778
BsrDI GCAATG 4 cut(s) 252, 297, 369, 1259
BsrI ACTGG 2 cut(s) 413, 1040
BssECI CCNNGG 1 cut(s) 1222
BssMI GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
BssT1I CCWWGG 1 cut(s) 1222
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 1 cut(s) 79
Bst6I CTCTTC 2 cut(s) 532, 899
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 259, 670
BstDEI CTNAG 4 cut(s) 716, 1054, 1172, 1284
BstF5I GGATG 3 cut(s) 579, 914, 1041
BstKTI GATC 9 cut(s) 102, 334, 607, 722, 821, 1087, 1104, 1295, 1310
BstMAI GTCTC 3 cut(s) 626, 1009, 1057
BstMBI GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
BstNI CCWGG 1 cut(s) 783
BstNSI RCATGY 2 cut(s) 656, 1022
BstSCI CCNGG 1 cut(s) 781
BstSFI CTRYAG 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 834
BstX2I RGATCY 2 cut(s) 818, 1292
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 2 cut(s) 818, 1292
BsuRI GGCC 7 cut(s) 68, 243, 285, 401, 494, 872, 1200
BtsCI GGATG 3 cut(s) 579, 914, 1041
BtsIMutI CAGTG 2 cut(s) 729, 1317
Cac8I GCNNGC 2 cut(s) 259, 670
Cfr13I GGNCC 6 cut(s) 35, 66, 305, 317, 870, 1176
CseI GACGC 1 cut(s) 413
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 4 cut(s) 808, 991, 1091, 1235
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviQI GTAC 4 cut(s) 808, 991, 1091, 1235
DdeI CTNAG 4 cut(s) 716, 1054, 1172, 1284
DpnI GATC 9 cut(s) 101, 333, 606, 721, 820, 1086, 1103, 1294, 1309
DpnII GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
EaeI YGGCCR 4 cut(s) 241, 283, 399, 492
Eam1104I CTCTTC 2 cut(s) 532, 899
EarI CTCTTC 2 cut(s) 532, 899
Eco130I CCWWGG 1 cut(s) 1222
Eco47I GGWCC 4 cut(s) 35, 305, 317, 1176
Eco88I CYCGRG 1 cut(s) 860
EcoO109I RGGNCCY 1 cut(s) 1176
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 1222
ErhI CCWWGG 1 cut(s) 1222
Esp3I CGTCTC 1 cut(s) 1057
FauNDI CATATG 3 cut(s) 263, 310, 1098
FokI GGATG 3 cut(s) 566, 921, 1048
FspBI CTAG 6 cut(s) 47, 321, 669, 956, 1088, 1223
GsuI CTGGAG 2 cut(s) 27, 396
HaeIII GGCC 7 cut(s) 68, 243, 285, 401, 494, 872, 1200
HgaI GACGC 1 cut(s) 413
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 5 cut(s) 547, 621, 759, 937, 1006
HphI GGTGA 2 cut(s) 922, 1181
Hpy166II GTNNAC 2 cut(s) 904, 1048
Hpy188I TCNGA 5 cut(s) 647, 736, 1057, 1122, 1287
Hpy188III TCNNGA 6 cut(s) 97, 182, 276, 346, 612, 1010
Hpy8I GTNNAC 2 cut(s) 904, 1048
Hpy99I CGWCG 2 cut(s) 393, 407
HpyAV CCTTC 2 cut(s) 26, 1351
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 3 cut(s) 388, 690, 1050
HpyCH4V TGCA 6 cut(s) 290, 362, 423, 472, 1022, 1248
HpyF3I CTNAG 4 cut(s) 716, 1054, 1172, 1284
HpySE526I ACGT 3 cut(s) 388, 690, 1050
Kzo9I GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 412, 568
LpnPI CCDG 8 cut(s) 65, 239, 426, 541, 768, 795, 1053, 1192
LweI GCATC 2 cut(s) 519, 1026
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 6 cut(s) 47, 321, 669, 956, 1088, 1223
MaeII ACGT 3 cut(s) 388, 690, 1050
MaeIII GTNAC 2 cut(s) 916, 1279
MalI GATC 9 cut(s) 101, 333, 606, 721, 820, 1086, 1103, 1294, 1309
MboI GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
MflI RGATCY 2 cut(s) 818, 1292
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 5 cut(s) 418, 658, 677, 1026, 1238
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 615
MnlI CCTC 9 cut(s) 14, 17, 133, 420, 568, 720, 951, 954, 1356
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 3 cut(s) 192, 452, 950
MslI CAYNNNNRTG 1 cut(s) 1286
Msp20I TGGCCA 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 1 cut(s) 783
NdeI CATATG 3 cut(s) 263, 310, 1098
NdeII GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
NheI GCTAGC 1 cut(s) 668
NlaIV GGNNCC 2 cut(s) 780, 1294
NmuCI GTSAC 1 cut(s) 1279
NspI RCATGY 2 cut(s) 656, 1022
NspV TTCGAA 1 cut(s) 147
PciI ACATGT 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 532
PctI GAATGC 1 cut(s) 1129
PfeI GAWTC 4 cut(s) 547, 759, 937, 1006
PflMI CCANNNNNTGG 1 cut(s) 314
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
PpuMI RGGWCCY 1 cut(s) 1176
PscI ACATGT 1 cut(s) 652
PsiI TTATAA 1 cut(s) 1205
Psp5II RGGWCCY 1 cut(s) 1176
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 780, 1294
PspPI GGNCC 6 cut(s) 35, 66, 305, 317, 870, 1176
PspPPI RGGWCCY 1 cut(s) 1176
PsuI RGATCY 2 cut(s) 818, 1292
RsaI GTAC 4 cut(s) 809, 992, 1092, 1236
RsaNI GTAC 4 cut(s) 808, 991, 1091, 1235
RseI CAYNNNNRTG 1 cut(s) 1286
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 192, 452, 950
Sau3AI GATC 9 cut(s) 99, 331, 604, 719, 818, 1084, 1101, 1292, 1307
Sau96I GGNCC 6 cut(s) 35, 66, 305, 317, 870, 1176
ScaI AGTACT 1 cut(s) 1092
SchI GAGTC 1 cut(s) 615
ScrFI CCNGG 1 cut(s) 783
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 2 cut(s) 519, 1026
SfcI CTRYAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 4 cut(s) 35, 305, 317, 1176
SmiMI CAYNNNNRTG 1 cut(s) 1286
SmlI CTYRAG 2 cut(s) 182, 344
SmoI CTYRAG 2 cut(s) 182, 344
Sse9I AATT 5 cut(s) 418, 658, 677, 1026, 1238
SspMI CTAG 6 cut(s) 47, 321, 669, 956, 1088, 1223
StyD4I CCNGG 1 cut(s) 781
StyI CCWWGG 1 cut(s) 1222
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 3 cut(s) 391, 693, 1053
TaqI TCGA 2 cut(s) 147, 897
TasI AATT 5 cut(s) 418, 658, 677, 1026, 1238
TatI WGTACW 3 cut(s) 807, 1090, 1234
TfiI GAWTC 4 cut(s) 547, 759, 937, 1006
Tru1I TTAA 3 cut(s) 192, 452, 950
Tru9I TTAA 3 cut(s) 192, 452, 950
TscAI CASTG 2 cut(s) 729, 1317
TseFI GTSAC 1 cut(s) 1279
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 9 cut(s) 469, 600, 614, 751, 761, 803, 1085, 1175, 1316
TspGWI ACGGA 2 cut(s) 695, 921
TspRI CASTG 2 cut(s) 729, 1317
Van91I CCANNNNNTGG 1 cut(s) 314
VpaK11BI GGWCC 4 cut(s) 35, 305, 317, 1176
XapI RAATTY 1 cut(s) 677
XceI RCATGY 2 cut(s) 656, 1022
XmaJI CCTAGG 1 cut(s) 1222
XspI CTAG 6 cut(s) 47, 321, 669, 956, 1088, 1223
ZrmI AGTACT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.