MD17G1274600.v1.1

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010739
Physical Location & Seq
Reverse (-)
33612411 .. 33616186
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1274600.v1.1.491

Sequence Viewer

Length: 267 bp
ATGTGGTTGACAAAGAGAAACAAAAGAGCTCTCTATGAAGCTCTTGAGAATATGCTATTAGGGCTCCTATCTTTGCTTCTAACAGTAGGACAAGACCGCATTTCAGATATGTGTACATCGAAGGCTGTTGAAGCTACTTGGCATCCATGCAATAGTAAGCAACATATCAAATCAGACAAAGGCAAAGATAAGAGTGGTGCTTCAGATGACAACTCCCGCAGATGGCTTCCCTCAGCCTTGGATTCCAGTGGGGGGTGGCCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

89

Amino Acids

9.85

Weight (kDa)

9.06

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 2 - 74 1.1e-16 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 217
AcoI YGGCCR 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 222, 252
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 3 cut(s) 29, 41, 134
AluI AGCT 3 cut(s) 29, 41, 134
Alw21I GWGCWC 1 cut(s) 31
AoxI GGCC 1 cut(s) 257
BanII GRGCYC 2 cut(s) 31, 66
Bbv12I GWGCWC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 151
Bpu10I CCTNAGC 1 cut(s) 232
BpuEI CTTGAG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 252
Bse1I ACTGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 222, 252
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 246
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 222, 252
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 31, 66
Bsp1407I TGTACA 1 cut(s) 113
BspACI CCGC 2 cut(s) 97, 217
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 61, 131
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 253
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 147
CviJI RGCY 8 cut(s) 29, 41, 64, 125, 134, 226, 236, 259
CviKI_1 RGCY 8 cut(s) 29, 41, 64, 125, 134, 226, 236, 259
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 2 cut(s) 31, 66
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 31, 66
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 150
FaiI YATR 5 cut(s) 36, 53, 110, 148, 165
FatI CATG 1 cut(s) 146
FauI CCCGC 1 cut(s) 224
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 2 cut(s) 31, 66
HaeIII GGCC 1 cut(s) 259
Hin1II CATG 1 cut(s) 150
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 9, 114
Hpy188I TCNGA 3 cut(s) 106, 175, 205
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 9, 114
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 131
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 1 cut(s) 150
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 1 cut(s) 259
LweI GCATC 1 cut(s) 151
MhlI GDGCHC 2 cut(s) 31, 66
MnlI CCTC 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 61, 131
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 242
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 65
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 31
SduI GDGCHC 2 cut(s) 31, 66
SetI ASST 3 cut(s) 31, 43, 136
SfaNI GCATC 1 cut(s) 151
SgeI CNNG 7 cut(s) 56, 104, 150, 159, 228, 250, 258
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 2 cut(s) 97, 217
SstI GAGCTC 1 cut(s) 31
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 119
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.