pycom04g09600

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0010739
Physical Location & Seq
Reverse (-)
12306346 .. 12309023
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09600.2

Sequence Viewer

Length: 681 bp
ATGGTGTCTAGCACTATTCTTTCCTGTGATATCAATGCCGTAAAGAACATGTGTGTTGCTGGTGCCGTCCAAGACTTCACCTCTCAGTTTTCACACTACACAGAAGGCACATCTGACCGTCGATATAATATAGCTGAGACCTTGGTTTTCTTGTCACACTTTGTGGGAGATATTCATCAGCCGATGCATGTCGGGTTCAGGACAGATGAGGGAGGAAACATGATAGCCTTGCGTTGGTACAGAAACAAATCCAATCTTCACCATGTGTGGGATAGGTTTCAATTAAAGATGGCAGGAGGAAAAGAAGGAAGATCGATCCCTTTGGAGCAAACACCAACTTGGGCAGTTGCCGTTGTTTGTTTCGTTTTGGTTTTGATTTCGATCCTCATCGAATATTTCATTCATTTAATTGCAAAGCTTATGCTATTAGGGTTCCTATCTTTGCTTCTAACAGTAGGACAAGGCCCCATTTCAAATATTTGTATATCGAAGGCTGTTGGAGCAACTTGGCATCCATGCAGTAAGAAGCACGAGGTCAAATCAGACAAGGGCGAAGATAAGAGTAGTGATTCAGATAACAACGCCCACAGAAGGCTTCTCTCAGCCTTGGATTCCAATGGTGGTGAACGACGTGTTTTAGCAGCCAGCGGATATGACAAATGTGCAGCCAAGGTACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

227

Amino Acids

25.02

Weight (kDa)

8.52

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 1 cut(s) 648
AclWI GGATC 2 cut(s) 310, 376
AdeI CACNNNGTG 2 cut(s) 163, 265
AfaI GTAC 2 cut(s) 239, 675
AfiI CCNNNNNNNGG 3 cut(s) 234, 268, 591
AflIII ACRYGT 2 cut(s) 48, 631
AgsI TTSAA 2 cut(s) 281, 474
AjiI CACGTC 1 cut(s) 632
AluBI AGCT 2 cut(s) 134, 418
AluI AGCT 2 cut(s) 134, 418
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 2 cut(s) 310, 376
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 641, 665
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 3 cut(s) 70, 251, 635
BanI GGYRCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 530
BbvI GCAGC 2 cut(s) 653, 677
BccI CCATC 1 cut(s) 283
BceAI ACGGC 3 cut(s) 23, 50, 335
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 9
BisI GCNGC 2 cut(s) 642, 666
BlsI GCNGC 2 cut(s) 643, 667
BmgBI CACGTC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 3 cut(s) 64, 434, 466
BmsI GCATC 2 cut(s) 174, 520
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 3 cut(s) 174, 380, 386
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 3 cut(s) 141, 606, 669
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 268, 591
Bse8I GATNNNNATC 3 cut(s) 174, 380, 386
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 141, 606, 669
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 3 cut(s) 174, 380, 386
BseLI CCNNNNNNNGG 3 cut(s) 234, 268, 591
BseMII CTCAG 3 cut(s) 98, 126, 615
BseXI GCAGC 2 cut(s) 653, 677
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 314
BslI CCNNNNNNNGG 3 cut(s) 234, 268, 591
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 311, 315, 381
BspACI CCGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 3 cut(s) 97, 127, 614
BspDI ATCGAT 1 cut(s) 314
BspLI GGNNCC 3 cut(s) 64, 434, 466
BspPI GGATC 2 cut(s) 310, 376
BspT107I GGYRCC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 141, 606, 669
BssMI GATC 3 cut(s) 311, 315, 381
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 3 cut(s) 141, 606, 669
Bst2BI CACGAG 1 cut(s) 530
Bst4CI ACNGT 2 cut(s) 119, 454
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 84, 135, 601
BstF5I GGATG 1 cut(s) 511
BstKTI GATC 3 cut(s) 314, 318, 384
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 3 cut(s) 311, 315, 381
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 2 cut(s) 52, 191
BstV1I GCAGC 2 cut(s) 653, 677
Bsu15I ATCGAT 1 cut(s) 314
BsuRI GGCC 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 314
BtrI CACGTC 1 cut(s) 632
BtsCI GGATG 1 cut(s) 511
Cac8I GCNNGC 1 cut(s) 646
Cfr13I GGNCC 1 cut(s) 464
ClaI ATCGAT 1 cut(s) 314
Csp6I GTAC 2 cut(s) 238, 674
CviAII CATG 5 cut(s) 49, 188, 220, 263, 516
CviQI GTAC 2 cut(s) 238, 674
DdeI CTNAG 3 cut(s) 84, 135, 601
DpnI GATC 3 cut(s) 313, 317, 383
DpnII GATC 3 cut(s) 311, 315, 381
DraIII CACNNNGTG 2 cut(s) 163, 265
Eco130I CCWWGG 3 cut(s) 141, 606, 669
Eco31I GGTCTC 1 cut(s) 131
Eco32I GATATC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 464
EcoRV GATATC 1 cut(s) 31
EcoT14I CCWWGG 3 cut(s) 141, 606, 669
EcoT22I ATGCAT 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 141, 606, 669
FaeI CATG 5 cut(s) 52, 191, 223, 266, 519
FatI CATG 5 cut(s) 48, 187, 219, 262, 515
Fnu4HI GCNGC 2 cut(s) 642, 666
FokI GGATG 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 642, 666
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 642, 666
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 5 cut(s) 52, 191, 223, 266, 519
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 2 cut(s) 569, 611
HphI GGTGA 3 cut(s) 70, 251, 635
Hpy166II GTNNAC 2 cut(s) 626, 676
Hpy188I TCNGA 3 cut(s) 115, 544, 574
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 2 cut(s) 626, 676
Hpy99I CGWCG 2 cut(s) 123, 633
HpyAV CCTTC 4 cut(s) 98, 299, 484, 585
HpyCH4III ACNGT 2 cut(s) 119, 454
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 4 cut(s) 187, 413, 519, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 3 cut(s) 84, 135, 601
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 5 cut(s) 52, 191, 223, 266, 519
Kzo9I GATC 3 cut(s) 311, 315, 381
LmnI GCTCC 2 cut(s) 325, 500
LpnPI CCDG 5 cut(s) 37, 45, 184, 279, 658
Lsp1109I GCAGC 2 cut(s) 653, 677
LweI GCATC 2 cut(s) 174, 520
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 153
MalI GATC 3 cut(s) 313, 317, 383
MboI GATC 3 cut(s) 311, 315, 381
MboII GAAGA 3 cut(s) 248, 321, 566
MluCI AATT 2 cut(s) 281, 408
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 6 cut(s) 91, 202, 206, 290, 395, 526
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 2 cut(s) 284, 407
MspA1I CMGCKG 1 cut(s) 648
MwoI GCNNNNNNNGC 1 cut(s) 500
NdeII GATC 3 cut(s) 311, 315, 381
NlaIII CATG 5 cut(s) 52, 191, 223, 266, 519
NlaIV GGNNCC 3 cut(s) 64, 434, 466
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 2 cut(s) 52, 191
PciI ACATGT 1 cut(s) 48
PfeI GAWTC 2 cut(s) 569, 611
PkrI GCNGC 2 cut(s) 643, 667
PscI ACATGT 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 64, 434, 466
PspPI GGNCC 1 cut(s) 464
RsaI GTAC 2 cut(s) 239, 675
RsaNI GTAC 2 cut(s) 238, 674
SaqAI TTAA 2 cut(s) 284, 407
SatI GCNGC 2 cut(s) 642, 666
Sau3AI GATC 3 cut(s) 311, 315, 381
Sau96I GGNCC 1 cut(s) 464
SetI ASST 8 cut(s) 83, 136, 143, 278, 420, 537, 634, 675
SfaNI GCATC 2 cut(s) 174, 520
Sse9I AATT 2 cut(s) 281, 408
SsiI CCGC 1 cut(s) 648
SspI AATATT 2 cut(s) 395, 478
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 3 cut(s) 141, 606, 669
TaaI ACNGT 2 cut(s) 119, 454
TaiI ACGT 1 cut(s) 634
TaqI TCGA 5 cut(s) 121, 314, 380, 390, 488
TasI AATT 2 cut(s) 281, 408
TfiI GAWTC 2 cut(s) 569, 611
Tru1I TTAA 2 cut(s) 284, 407
Tru9I TTAA 2 cut(s) 284, 407
TseFI GTSAC 1 cut(s) 153
TseI GCWGC 2 cut(s) 641, 665
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 164, 388, 392
XceI RCATGY 2 cut(s) 52, 191
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.