MD11G1034900.v1.1

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
3077693 .. 3080762
3070 bp
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UTR
Exon/CDS
Intron
MD11G1034900.v1.1.491

Sequence Viewer

Length: 189 bp
ATGAATACAGGAGGAACATTGACTTGGTATATATGTACGTCGAAGGCTGTTGGAACAACTTGGCATCCATGCAATAATAAGCAAGATGTCAAATCGGACAAAGGCAAAGATAAGAGTGGTGCTTCAGATGACAACTCCCACGGAAGGCTTCTCTCAGCCTTGAATTCCAGTGGGGGGTGGCCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.6

Weight (kDa)

8.71

Isoelectric Point (pI)

16.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010739)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 2 cut(s) 144, 174
AgsI TTSAA 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AoxI GGCC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 163
BmsI GCATC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 174
Bse1I ACTGG 1 cut(s) 168
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 144, 174
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 168
BshFI GGCC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 144, 174
BsnI GGCC 1 cut(s) 181
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 167
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 69
CviJI RGCY 4 cut(s) 47, 148, 158, 181
CviKI_1 RGCY 4 cut(s) 47, 148, 158, 181
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 163
FaeI CATG 1 cut(s) 72
FaiI YATR 5 cut(s) 30, 32, 34, 70, 187
FatI CATG 1 cut(s) 68
FokI GGATG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 181
Hin1II CATG 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 97, 127
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 37, 138
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 1 cut(s) 72
LpnPI CCDG 1 cut(s) 181
LweI GCATC 1 cut(s) 73
MaeII ACGT 1 cut(s) 38
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 1 cut(s) 5
NlaIII CATG 1 cut(s) 72
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SetI ASST 1 cut(s) 41
SfaNI GCATC 1 cut(s) 73
SgeI CNNG 8 cut(s) 21, 36, 72, 81, 95, 152, 172, 180
Sse9I AATT 1 cut(s) 163
TaiI ACGT 1 cut(s) 41
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 163
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 175
XapI RAATTY 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.