RLG00000002580

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010739
Physical Location & Seq
Reverse (-)
36575043 .. 36579093
4051 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002580

Sequence Viewer

Length: 1494 bp
ATGGCCGGTGGTGGTGGCACAGGCAGCAGAGAGCTTGATCAGACGCCGACGTGGGCTGTCGCCGGTGTCTGCTTCCTCATCATTCTTATTTCCATAATTTTGGAAAAGGTTCTTCACCTGGTCGGACATTGGTTTGAACGTAGAAAAAAAGCCGGTTTGCTTGAAGCTCTGGAGATAGTTAAAGCAGAGCTTATGGTTTTGGGATTCATTTCTTTGCTACTGACATTTGGGCAAGCGTACATCGCTCGAAAGTGCATTCCTGAACACTATGCAGATACAATGTTGCCCTGTCCTTACAGAAACAGCCCTGATGATCACGGTGGTGGTGACAAAGGTGGTGGTAACAAAGGTGGTGGAGGAGGAGGTCATCGCAGGCTTTTATGGTATGAGCAGGAGCGCAGAATTTTAGCTGCTGGTAGCTCTGGCCAAGCCTGTGCAGAGGGAGAAGTGCCGCTTATCTCTATAAATGGATTACATCAGTTGCACATCTTCATCTTCTTCTTAGCAGTATTTCACGTTATATATGGTGCCATAACCATGACACTAGGAAGATTAAAGATTCGTAGGTGGAAGCAGTGGGAACGAGAAGCTGTAAATGATAGTGAATTCAATGATCCTACGAAATTCAGGCTTACTCACGAGACATCATTTGTGAGAGACCACACAAGATGTTGGACTAAAACACGATTCACCTTCTACTTTGTATGCTTTTTCCGACAATTCTTTAGGTCTGTTCGTAGGGCTGATTTCTTGACCATGCGGCACGGATTTGTCACTTTTTTTAGCAAGTTTCTTTCTATCCATAAGGTAGTTATTCCACTGTTATGGGCTATGATGACGCTCTATTTGCTTCTCAATGTTCATGGATGGGAGGCTATGTTTGTCCTGTCCATACTTCCTCTAGTTATAATCTTAGCTGTTGGAACAAAGCTGCAAGGAATTATAACACAAATGGCACTTGAAATCCAAGAAAGACATGCTGTGGTGCAAGGGATACCTCTGGTGCAAGTCACTGATAAGCATTTTTGGTTTAGCTGGCCGGAGCTAGTGCTTTATTTGATCCATTTTGTCCTGTTTCAGAATGCCTTTGAGATAACGCATTTCTTTTGGATATGGTATGAGTTCGGGATCATGTCTTGTTTTCATGAGAACTTCAATCTTACATTGGTCAGAGTTGGTCTTGGGGTTTGCGTCCAGTTTATGTGCAGCTACATCACACTTCCGCTATATGCATTGGTTACACAGATGGGTTCAACAATGAAGAAGTCAATCTTTGATGAACAAACTAACAAGGCCTTAAAGAAATGGCAAAAGAATGCTCAAAAGAAGAATAAGCATGAGGGCTTGCATAAAACAACTAAACAAAAACTGGGTGGACAGTCAGCAAATCCACAGAGTGACCTGGAAACAGAGGGATCAAATCCACGACAATCGGCAAACATCATGGCCAGTGTCGACGTTCAAGGCAAGAATGACCTACTAACAGGACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

498

Amino Acids

56.62

Weight (kDa)

9.27

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 10 - 465 5.2e-181 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 908, 944
AccB1I GGYRCC 1 cut(s) 527
AccI GTMKAC 1 cut(s) 1455
AciI CCGC 3 cut(s) 452, 760, 1223
AclWI GGATC 4 cut(s) 608, 1054, 1136, 1423
AcoI YGGCCR 4 cut(s) 3, 424, 1037, 1446
AcsI RAATTY 3 cut(s) 402, 605, 623
AcyI GRCGYC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 1397
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 7 cut(s) 137, 164, 610, 962, 1156, 1254, 1463
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 117, 1401
AleI CACNNNNGTG 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 635, 651
AlwI GGATC 4 cut(s) 608, 1054, 1136, 1423
AoxI GGCC 5 cut(s) 3, 424, 1037, 1293, 1446
ApeKI GCWGC 4 cut(s) 24, 410, 931, 1206
ApoI RAATTY 3 cut(s) 402, 605, 623
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 1487
AsuHPI GGTGA 3 cut(s) 107, 338, 682
AvaII GGWCC 1 cut(s) 1487
BalI TGGCCA 2 cut(s) 426, 1448
BanI GGYRCC 1 cut(s) 527
BauI CACGAG 1 cut(s) 638
BbvI GCAGC 4 cut(s) 36, 397, 918, 1218
BccI CCATC 2 cut(s) 861, 1240
BciT130I CCWGG 2 cut(s) 119, 1403
BciVI GTATCC 1 cut(s) 987
BclI TGATCA 2 cut(s) 37, 313
BcoDI GTCTC 2 cut(s) 635, 651
BfaI CTAG 3 cut(s) 545, 902, 1046
BfuI GTATCC 1 cut(s) 987
BisI GCNGC 6 cut(s) 25, 411, 452, 761, 932, 1207
BlsI GCNGC 6 cut(s) 26, 412, 453, 762, 933, 1208
Bme1390I CCNGG 2 cut(s) 119, 1403
Bme18I GGWCC 1 cut(s) 1487
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 1487
BmiI GGNNCC 1 cut(s) 529
BmrFI CCNGG 2 cut(s) 119, 1403
BmrI ACTGGG 1 cut(s) 1379
BmuI ACTGGG 1 cut(s) 1379
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 863, 893
Bse118I RCCGGY 3 cut(s) 5, 62, 152
Bse1I ACTGG 3 cut(s) 1195, 1374, 1449
BseBI CCWGG 2 cut(s) 119, 1403
BseGI GGATG 1 cut(s) 872
BseNI ACTGG 3 cut(s) 1195, 1374, 1449
BseRI GAGGAG 2 cut(s) 372, 375
BseXI GCAGC 4 cut(s) 36, 397, 918, 1218
BsgI GTGCAG 2 cut(s) 456, 1225
BshFI GGCC 5 cut(s) 5, 426, 1039, 1295, 1448
BshNI GGYRCC 1 cut(s) 527
BsiSI CCGG 4 cut(s) 6, 63, 153, 1040
BsmAI GTCTC 2 cut(s) 635, 651
BsmI GAATGC 3 cut(s) 255, 1087, 1321
BsnI GGCC 5 cut(s) 5, 426, 1039, 1295, 1448
Bso31I GGTCTC 1 cut(s) 651
Bsp143I GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
BspACI CCGC 3 cut(s) 452, 760, 1223
BspANI GGCC 5 cut(s) 5, 426, 1039, 1295, 1448
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 1 cut(s) 529
BspPI GGATC 4 cut(s) 608, 1054, 1136, 1423
BspT107I GGYRCC 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 651
BsrFI RCCGGY 3 cut(s) 5, 62, 152
BsrI ACTGG 3 cut(s) 1195, 1374, 1449
BssAI RCCGGY 3 cut(s) 5, 62, 152
BssMI GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 638
Bst2BI CACGAG 1 cut(s) 638
Bst2UI CCWGG 2 cut(s) 119, 1403
Bst4CI ACNGT 4 cut(s) 320, 822, 1380, 1491
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 234, 374, 1037, 1346
BstDEI CTNAG 2 cut(s) 502, 913
BstF5I GGATG 1 cut(s) 872
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 6 cut(s) 40, 316, 616, 1062, 1131, 1418
BstMAI GTCTC 2 cut(s) 635, 651
BstMBI GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
BstMWI GCNNNNNNNGC 3 cut(s) 24, 242, 847
BstNI CCWGG 2 cut(s) 119, 1403
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 2 cut(s) 117, 1401
BstV1I GCAGC 4 cut(s) 36, 397, 918, 1218
BstXI CCANNNNNNTGG 2 cut(s) 100, 825
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 5 cut(s) 5, 426, 1039, 1295, 1448
BtgZI GCGATG 2 cut(s) 226, 353
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 872
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 4 cut(s) 581, 818, 1011, 1456
Cac8I GCNNGC 4 cut(s) 234, 374, 1037, 1346
CciI TCATGA 1 cut(s) 1144
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 3 cut(s) 5, 62, 152
Cfr13I GGNCC 1 cut(s) 1487
CseI GACGC 3 cut(s) 52, 847, 1180
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 4 cut(s) 319, 334, 354, 369
CviAII CATG 8 cut(s) 538, 757, 863, 977, 1132, 1145, 1337, 1444
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 2 cut(s) 502, 913
DpnI GATC 6 cut(s) 39, 315, 615, 1061, 1130, 1417
DpnII GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
DraIII CACNNNGTG 1 cut(s) 1397
EaeI YGGCCR 4 cut(s) 3, 424, 1037, 1446
Eco147I AGGCCT 1 cut(s) 1295
Eco31I GGTCTC 1 cut(s) 651
Eco47I GGWCC 1 cut(s) 1487
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 117, 1401
EcoT22I ATGCAT 1 cut(s) 1234
FaeI CATG 8 cut(s) 541, 760, 866, 980, 1135, 1148, 1340, 1447
FalI AAGNNNNNCTT 6 cut(s) 174, 206, 438, 470, 1256, 1288
FatI CATG 8 cut(s) 537, 756, 862, 976, 1131, 1144, 1336, 1443
FbaI TGATCA 2 cut(s) 37, 313
FblI GTMKAC 1 cut(s) 1455
Fnu4HI GCNGC 6 cut(s) 25, 411, 452, 761, 932, 1207
FokI GGATG 1 cut(s) 879
Fsp4HI GCNGC 6 cut(s) 25, 411, 452, 761, 932, 1207
FspBI CTAG 3 cut(s) 545, 902, 1046
GlaI GCGC 1 cut(s) 398
GluI GCNGC 6 cut(s) 25, 411, 452, 761, 932, 1207
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 5 cut(s) 5, 426, 1039, 1295, 1448
HapII CCGG 4 cut(s) 6, 63, 153, 1040
HgaI GACGC 3 cut(s) 52, 847, 1180
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 8 cut(s) 541, 760, 866, 980, 1135, 1148, 1340, 1447
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 1456
HindII GTYRAC 1 cut(s) 1456
HinfI GANTC 3 cut(s) 204, 559, 687
HpaII CCGG 4 cut(s) 6, 63, 153, 1040
HphI GGTGA 3 cut(s) 107, 338, 682
Hpy166II GTNNAC 2 cut(s) 1376, 1456
Hpy188I TCNGA 5 cut(s) 42, 125, 716, 1080, 1172
Hpy188III TCNNGA 6 cut(s) 170, 260, 638, 751, 1126, 1145
Hpy8I GTNNAC 2 cut(s) 1376, 1456
Hpy99I CGWCG 2 cut(s) 52, 1460
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 4 cut(s) 320, 822, 1380, 1491
HpyCH4IV ACGT 4 cut(s) 50, 139, 516, 1458
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 242, 847
HpyF3I CTNAG 2 cut(s) 502, 913
HpySE526I ACGT 4 cut(s) 50, 139, 516, 1458
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 8 cut(s) 541, 760, 866, 980, 1135, 1148, 1340, 1447
HspAI GCGC 1 cut(s) 397
Ksp22I TGATCA 2 cut(s) 37, 313
Kzo9I GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
LmnI GCTCC 2 cut(s) 394, 1042
Lsp1109I GCAGC 4 cut(s) 36, 397, 918, 1218
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 3 cut(s) 545, 902, 1046
MaeII ACGT 4 cut(s) 50, 139, 516, 1458
MaeIII GTNAC 6 cut(s) 326, 341, 772, 1009, 1237, 1397
MalI GATC 6 cut(s) 39, 315, 615, 1061, 1130, 1417
MboI GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
MboII GAAGA 7 cut(s) 104, 481, 487, 490, 561, 1273, 1339
MlsI TGGCCA 2 cut(s) 426, 1448
MluCI AATT 6 cut(s) 96, 402, 605, 623, 719, 939
MluNI TGGCCA 2 cut(s) 426, 1448
MmeI TCCRAC 4 cut(s) 103, 653, 739, 901
Mox20I TGGCCA 2 cut(s) 426, 1448
Mph1103I ATGCAT 1 cut(s) 1234
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 2 cut(s) 426, 1448
MseI TTAA 3 cut(s) 180, 554, 1298
MslI CAYNNNNRTG 3 cut(s) 321, 536, 823
Msp20I TGGCCA 2 cut(s) 426, 1448
MspI CCGG 4 cut(s) 6, 63, 153, 1040
MspR9I CCNGG 2 cut(s) 119, 1403
Mva1269I GAATGC 3 cut(s) 255, 1087, 1321
MvaI CCWGG 2 cut(s) 119, 1403
MwoI GCNNNNNNNGC 3 cut(s) 24, 242, 847
NdeII GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
NlaIII CATG 8 cut(s) 541, 760, 866, 980, 1135, 1148, 1340, 1447
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 4 cut(s) 326, 772, 1009, 1397
NsiI ATGCAT 1 cut(s) 1234
NspI RCATGY 1 cut(s) 980
OliI CACNNNNGTG 1 cut(s) 321
PagI TCATGA 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 1295
PctI GAATGC 3 cut(s) 255, 1087, 1321
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 204, 559, 687
PkrI GCNGC 6 cut(s) 26, 412, 453, 762, 933, 1208
PsiI TTATAA 2 cut(s) 908, 944
Psp6I CCWGG 2 cut(s) 117, 1401
PspGI CCWGG 2 cut(s) 117, 1401
PspN4I GGNNCC 1 cut(s) 529
PspPI GGNCC 1 cut(s) 1487
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 3 cut(s) 321, 536, 823
SalI GTCGAC 1 cut(s) 1454
SaqAI TTAA 3 cut(s) 180, 554, 1298
SatI GCNGC 6 cut(s) 25, 411, 452, 761, 932, 1207
Sau3AI GATC 6 cut(s) 37, 313, 613, 1059, 1128, 1415
Sau96I GGNCC 1 cut(s) 1487
ScrFI CCNGG 2 cut(s) 119, 1403
SexAI ACCWGGT 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 1 cut(s) 1487
SmiMI CAYNNNNRTG 3 cut(s) 321, 536, 823
Sse9I AATT 6 cut(s) 96, 402, 605, 623, 719, 939
SseBI AGGCCT 1 cut(s) 1295
SsiI CCGC 3 cut(s) 452, 760, 1223
SspMI CTAG 3 cut(s) 545, 902, 1046
StuI AGGCCT 1 cut(s) 1295
StyD4I CCNGG 2 cut(s) 117, 1401
TaaI ACNGT 4 cut(s) 320, 822, 1380, 1491
TaiI ACGT 4 cut(s) 53, 142, 519, 1461
TaqI TCGA 2 cut(s) 247, 1455
TasI AATT 6 cut(s) 96, 402, 605, 623, 719, 939
TauI GCSGC 2 cut(s) 454, 763
TfiI GAWTC 3 cut(s) 204, 559, 687
Tru1I TTAA 3 cut(s) 180, 554, 1298
Tru9I TTAA 3 cut(s) 180, 554, 1298
TscAI CASTG 4 cut(s) 581, 825, 1018, 1456
TseFI GTSAC 4 cut(s) 326, 772, 1009, 1397
TseI GCWGC 4 cut(s) 24, 410, 931, 1206
Tsp45I GTSAC 4 cut(s) 326, 772, 1009, 1397
TspDTI ATGAA 6 cut(s) 196, 481, 851, 1133, 1274, 1293
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 4 cut(s) 581, 825, 1018, 1456
VpaK11BI GGWCC 1 cut(s) 1487
XapI RAATTY 3 cut(s) 402, 605, 623
XceI RCATGY 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 1455
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 545, 902, 1046
Zsp2I ATGCAT 1 cut(s) 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.