Rh7DG299900

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010739
Physical Location & Seq
Forward (+)
34309673 .. 34314643
4971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG299900.1

Sequence Viewer

Length: 1347 bp
ATGGCCGGTGGTGGTGGCGCAGGCAGCAGAGAGCTCGATCAGACGCCGACGTGGGCTGTCGCCGGTGTCTGTTTCCTCATCATTCTTATTTCCATAATTTTGGAAAAGGTTCTTCACCTGGTCGGACATTGGTTTGAACGTAGAAAAAAAGCCGGTTTGCTTGAAGCTCTGGAGATAGTTAAAGCAGAGCTTATGGTTTTGGGATTCATTTCTTTGCTACTGACATTTGGGCAAGCGTACATCGCTAAAAGGTGCATTCCTGAACACTATGCAGATACAATGTTGCCCTGTCCTTACAGAAACGGCCCTGATGATCACGGTGGTGGTGACAAAGGTGGTGACAAAGGTGGTGGAGGAGGAGGTCATCGCAGGCTTTTATGGTATGAGCAGGAGCGCAGAATTTTAGCTGCTGGTAGCTCTGGCCACGCCTGTGCAGAGGGAGAAGTGCCGCTTATCTCTATAAATGGATTACATCAGTTGCACATCTTCATCTTCTTCTTAGCAGTATTTCACGTTATATATGGTGCCATAACCATGACACTAGGAAGATTAAAGATTCGTAGGTGGAAGCAGTGGGAACGAGAAGCTGTAAATGATAGTGAATTCAATGATCCTACGAAATTCAGGCTTACTCACGAGACATCATTTGTGAGAGACCACACAAGATGTTGGACAAAAACACCATTCACCTTCTACTTAGTATGCTTTTTCCGACAATTCTTTAGGTCTGTTCGTAGGGCTGATTTCTTGACCATGCGGCATGGATTCGTCACTGTTCATTTAGCACCTGGAAGCAACTTTGATTTTCAAAAATATATCAAGAGATCATTAGAAGATGACTTTAAGGTAGTTGTGGGAATCAGTCCACTGTTATGGACTACGATGACGCTCTATTTGCTTCTCAATGTTCATGGATGGGAGGCTATGTTTGTCCTGTCCATACTTCCTCTAGTTATAATCTTAGCTGTTGGAACAAAGCTGCAAGGAATTATAACACAAATGGCACTTGAAATCCAAGAAAGACATGCTGTGGTGCAAGGGATACCTCTGGTGCAAGTCACTGATAAGCATTTTTGGTTTAGCTGGCCGGAGCTAGTGCTTTATTTGATCCATTTTGTCCTGTTTCAGAATGCCTTTGAGATAACACATTTCTTTTGGATATGGTATGAGTTCGGGATCAGGTCTTGTTTCCATGAGAACTTCAATCTTACATTGGTCAGAGTTGGTCTTGGGTATGTCTTTTCCTTTTCCCACTTGTTGATACAGATACCTTTTTTTTTAAATTATATTCGAGTAGAGCATGGGATCCTACATGGAAGTTTTTATGAACACATTATTCCCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

448

Amino Acids

51.46

Weight (kDa)

8.36

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 10 - 417 3.5e-177 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 956, 992
AccB1I GGYRCC 1 cut(s) 524
AciI CCGC 2 cut(s) 449, 757
AclWI GGATC 5 cut(s) 605, 1102, 1184, 1300, 1313
AcoI YGGCCR 3 cut(s) 3, 421, 1085
AcsI RAATTY 3 cut(s) 399, 602, 620
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 6 cut(s) 137, 164, 607, 809, 1010, 1204
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 117, 787
AleI CACNNNNGTG 2 cut(s) 321, 429
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 632, 648
AlwI GGATC 5 cut(s) 605, 1102, 1184, 1300, 1313
AoxI GGCC 4 cut(s) 3, 304, 421, 1085
ApeKI GCWGC 3 cut(s) 24, 407, 979
ApoI RAATTY 3 cut(s) 399, 602, 620
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 20, 396
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 107, 338, 350, 679
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 1305
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 3 cut(s) 36, 394, 966
BccI CCATC 1 cut(s) 909
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 2 cut(s) 119, 789
BciVI GTATCC 1 cut(s) 1035
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 632, 648
BfaI CTAG 4 cut(s) 542, 950, 1094, 1345
BfuI GTATCC 1 cut(s) 1035
BisI GCNGC 5 cut(s) 25, 408, 449, 758, 980
BlsI GCNGC 5 cut(s) 26, 409, 450, 759, 981
Bme1390I CCNGG 2 cut(s) 119, 789
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 526, 1307
BmrFI CCNGG 2 cut(s) 119, 789
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bse118I RCCGGY 3 cut(s) 5, 62, 152
BseBI CCWGG 2 cut(s) 119, 789
BseGI GGATG 1 cut(s) 920
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 3 cut(s) 36, 394, 966
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 4 cut(s) 5, 306, 423, 1087
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 4 cut(s) 6, 63, 153, 1088
BsmAI GTCTC 2 cut(s) 632, 648
BsmI GAATGC 2 cut(s) 255, 1135
BsnI GGCC 4 cut(s) 5, 306, 423, 1087
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
BspACI CCGC 2 cut(s) 449, 757
BspANI GGCC 4 cut(s) 5, 306, 423, 1087
BspLI GGNNCC 2 cut(s) 526, 1307
BspPI GGATC 5 cut(s) 605, 1102, 1184, 1300, 1313
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 648
BsrFI RCCGGY 3 cut(s) 5, 62, 152
BssAI RCCGGY 3 cut(s) 5, 62, 152
BssMI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 119, 789
Bst4CI ACNGT 3 cut(s) 320, 775, 870
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 22, 234, 371, 1085
BstDEI CTNAG 3 cut(s) 499, 697, 961
BstF5I GGATG 1 cut(s) 920
BstHHI GCGC 2 cut(s) 20, 396
BstKTI GATC 7 cut(s) 40, 316, 613, 827, 1110, 1179, 1308
BstMAI GTCTC 2 cut(s) 632, 648
BstMBI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
BstMWI GCNNNNNNNGC 3 cut(s) 24, 242, 895
BstNI CCWGG 2 cut(s) 119, 789
BstNSI RCATGY 1 cut(s) 1028
BstSCI CCNGG 2 cut(s) 117, 787
BstV1I GCAGC 3 cut(s) 36, 394, 966
BstX2I RGATCY 1 cut(s) 1305
BstXI CCANNNNNNTGG 2 cut(s) 100, 873
BstYI RGATCY 1 cut(s) 1305
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 5, 306, 423, 1087
BtgZI GCGATG 2 cut(s) 226, 350
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 920
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 4 cut(s) 578, 771, 866, 1059
Cac8I GCNNGC 4 cut(s) 22, 234, 371, 1085
CfoI GCGC 2 cut(s) 20, 396
Cfr10I RCCGGY 3 cut(s) 5, 62, 152
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 2 cut(s) 52, 895
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 8 cut(s) 535, 754, 761, 911, 1025, 1193, 1301, 1313
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 499, 697, 961
DpnI GATC 7 cut(s) 39, 315, 612, 826, 1109, 1178, 1307
DpnII GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
DraI TTTAAA 1 cut(s) 1281
EaeI YGGCCR 3 cut(s) 3, 421, 1085
Ecl136II GAGCTC 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 117, 787
EcoT38I GRGCYC 1 cut(s) 36
FaeI CATG 8 cut(s) 538, 757, 764, 914, 1028, 1196, 1304, 1316
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 435, 467
FatI CATG 8 cut(s) 534, 753, 760, 910, 1024, 1192, 1300, 1312
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 5 cut(s) 25, 408, 449, 758, 980
FokI GGATG 1 cut(s) 927
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 5 cut(s) 25, 408, 449, 758, 980
FspBI CTAG 4 cut(s) 542, 950, 1094, 1345
GlaI GCGC 2 cut(s) 19, 395
GluI GCNGC 5 cut(s) 25, 408, 449, 758, 980
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 4 cut(s) 5, 306, 423, 1087
HapII CCGG 4 cut(s) 6, 63, 153, 1088
HgaI GACGC 2 cut(s) 52, 895
HhaI GCGC 2 cut(s) 20, 396
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 8 cut(s) 538, 757, 764, 914, 1028, 1196, 1304, 1316
Hin6I GCGC 2 cut(s) 18, 394
HinP1I GCGC 2 cut(s) 18, 394
HinfI GANTC 4 cut(s) 204, 556, 765, 858
HpaII CCGG 4 cut(s) 6, 63, 153, 1088
HphI GGTGA 4 cut(s) 107, 338, 350, 679
Hpy166II GTNNAC 1 cut(s) 866
Hpy188I TCNGA 5 cut(s) 42, 125, 713, 1128, 1220
Hpy188III TCNNGA 6 cut(s) 170, 260, 635, 748, 820, 1174
Hpy8I GTNNAC 1 cut(s) 866
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 3 cut(s) 320, 775, 870
HpyCH4IV ACGT 3 cut(s) 50, 139, 513
HpyCH4V TGCA 7 cut(s) 255, 272, 434, 481, 982, 1036, 1054
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 242, 895
HpyF3I CTNAG 3 cut(s) 499, 697, 961
HpySE526I ACGT 3 cut(s) 50, 139, 513
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 8 cut(s) 538, 757, 764, 914, 1028, 1196, 1304, 1316
HspAI GCGC 2 cut(s) 18, 394
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
LmnI GCTCC 2 cut(s) 391, 1090
Lsp1109I GCAGC 3 cut(s) 36, 394, 966
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 4 cut(s) 542, 950, 1094, 1345
MaeII ACGT 3 cut(s) 50, 139, 513
MaeIII GTNAC 4 cut(s) 326, 338, 769, 1057
MalI GATC 7 cut(s) 39, 315, 612, 826, 1109, 1178, 1307
MboI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
MboII GAAGA 6 cut(s) 104, 478, 484, 487, 558, 845
MflI RGATCY 1 cut(s) 1305
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 7 cut(s) 96, 399, 602, 620, 716, 987, 1282
MluNI TGGCCA 1 cut(s) 423
MmeI TCCRAC 4 cut(s) 103, 650, 736, 949
MnlI CCTC 8 cut(s) 86, 347, 350, 353, 430, 913, 957, 1056
Mox20I TGGCCA 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 1 cut(s) 423
MseI TTAA 4 cut(s) 180, 551, 843, 1280
MslI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 4 cut(s) 6, 63, 153, 1088
MspR9I CCNGG 2 cut(s) 119, 789
Mva1269I GAATGC 2 cut(s) 255, 1135
MvaI CCWGG 2 cut(s) 119, 789
MwoI GCNNNNNNNGC 3 cut(s) 24, 242, 895
NdeII GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
NlaIII CATG 8 cut(s) 538, 757, 764, 914, 1028, 1196, 1304, 1316
NlaIV GGNNCC 2 cut(s) 526, 1307
NmuCI GTSAC 4 cut(s) 326, 338, 769, 1057
NspI RCATGY 1 cut(s) 1028
OliI CACNNNNGTG 2 cut(s) 321, 429
PctI GAATGC 2 cut(s) 255, 1135
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 204, 556, 765, 858
PkrI GCNGC 5 cut(s) 26, 409, 450, 759, 981
PsiI TTATAA 2 cut(s) 956, 992
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 117, 787
PspGI CCWGG 2 cut(s) 117, 787
PspN4I GGNNCC 2 cut(s) 526, 1307
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 1305
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
SacI GAGCTC 1 cut(s) 36
SaqAI TTAA 4 cut(s) 180, 551, 843, 1280
SatI GCNGC 5 cut(s) 25, 408, 449, 758, 980
Sau3AI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1305
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 119, 789
SduI GDGCHC 1 cut(s) 36
SexAI ACCWGGT 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 62
SmiMI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
Sse9I AATT 7 cut(s) 96, 399, 602, 620, 716, 987, 1282
SsiI CCGC 2 cut(s) 449, 757
SspMI CTAG 4 cut(s) 542, 950, 1094, 1345
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 2 cut(s) 117, 787
TaaI ACNGT 3 cut(s) 320, 775, 870
TaiI ACGT 3 cut(s) 53, 142, 516
TaqI TCGA 2 cut(s) 36, 1291
TasI AATT 7 cut(s) 96, 399, 602, 620, 716, 987, 1282
TauI GCSGC 2 cut(s) 451, 760
TfiI GAWTC 4 cut(s) 204, 556, 765, 858
Tru1I TTAA 4 cut(s) 180, 551, 843, 1280
Tru9I TTAA 4 cut(s) 180, 551, 843, 1280
TscAI CASTG 4 cut(s) 578, 778, 873, 1066
TseFI GTSAC 4 cut(s) 326, 338, 769, 1057
TseI GCWGC 3 cut(s) 24, 407, 979
Tsp45I GTSAC 4 cut(s) 326, 338, 769, 1057
TspDTI ATGAA 5 cut(s) 196, 478, 767, 899, 1341
TspRI CASTG 4 cut(s) 578, 778, 873, 1066
XapI RAATTY 3 cut(s) 399, 602, 620
XceI RCATGY 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 4 cut(s) 542, 950, 1094, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.