Rh7CG317700

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010739
Physical Location & Seq
Forward (+)
33893508 .. 33897559
4052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG317700.1

Sequence Viewer

Length: 1542 bp
ATGGCCGGTGGTGGTGGCGCAGGCAGCAGAGAGCTCGATCAGACGCCGACGTGGGCTGTCGCCGGTGTCTGTTTCCTCATCATTCTTATTTCCATAATTTTGGAAAAGGTTCTTCACCTGGTCGGACATTGGTTTGAACGTAGAAAAAAAGCCGGTTTGCTTGAAGCTCTGGAGATAGTTAAAGCAGAGCTTATGGTTTTGGGATTCATTTCTTTGCTACTGACATTTGGGCAAGCGTACATCGCTAAAAGGTGCATTCCTGAACACTATGCAGATACAATGTTGCCCTGTCCTTACAGAAACGGCCCTGATGATCACGGTGGTGGTGACAAAGGTGGTGACAAAGGTGGTGGAGGAGGAGGTCATCGCAGGCTTTTATGGTATGAGCAGGAGCGCAGAATTTTAGCTGCTGGTAGCTCTGGCCACGCCTGTGCAGAGGGAGAAGTGCCGCTTATCTCTATAAATGGATTACATCAGTTGCACATCTTCATCTTCTTCTTAGCAGTATTTCACGTTATATATGGTGCCATAACCATGACACTAGGAAGATTAAAGATTCGTAGGTGGAAGCAGTGGGAACGAGAAGCTGTAAATGATAGTGAATTCAATGATCCTACGAAATTCAGGCTTACTCACGAGACATCATTTGTGAGAGACCACACAAGATGTTGGACAAAAACACCATTCACCTTCTACTTAGTATGCTTTTTCCGACAATTCTTTAGGTCTGTTCGTAGGGCTGATTTCTTGACCATGCGGCATGGATTCGTCACTGTTCATTTAGCACCTGGAAGCAACTTTGATTTTCAAAAATATATCAAGAGATCATTAGAAGATGACTTTAAGGTAGTTGTGGGAATCAGTCCACTGTTATGGACTACGATGACGCTCTATTTGCTTCTCAATGTTCATGGATGGGAGGCTATGTTTGTCCTGTCCATACTTCCTCTAGTTATAATCTTAGCTGTTGGAACAAAGCTGCAAGGAATTATAACACAAATGGCACTTGAAATCCAAGAAAGACATGCTGTGGTGCAAGGGATACCTCTGGTGCAAGTCACTGATAAGCATTTTTGGTTTAGCTGGCCGGAGCTAGTGCTTTATTTGATCCATTTTGTCCTGTTTCAGAATGCCTTTGAGATAACACATTTCTTTTGGATATGGTATGAGTTCGGGATCAGGTCTTGTTTCCATGAGAACTTCAATCTTACATTGGTCAGAGTTGGTCTTGGGGTTGCCGTCCAGTTTATGTGCAGCTACATCACACTTCCGCTATATGCATTGGTTACACAGATGGGTTCAACAATGAAGAAGTCAATCTTTGATGAACAAACTAACAAGGCCTTAAAGAAATGGCAAAAGAATGCTCAAAAGAAGAATAAGCATGAGGGCTCGCATAAAACAACTAAACAAAAACTGGGTGGACAGTCAGCAAATCCACAGGGTGACATGGAAACAGAGGGATCAAATCCACGACAATCGGCAAACATCATGGCCAGTGTCGACGTTCAAGGCAAGAATGACCTACTAACAGGACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0016020 GO:0044464 GO:0050896 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mlo

Protein Analysis

513

Amino Acids

58.22

Weight (kDa)

9.1

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 10 - 481 2.2e-210 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010739)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42560 AT1G42560 AT2G33670
fragaria_vesca FvH4_5g25860 FvH4_5g25860
malus_domestica MD06G1005800.v1.1 MD10G1233000.v1.1 MD11G1034900.v1.1 MD17G1274600.v1.1
prunus_persica Prupe.5G007100_v2.0.a1
pyrus_communis pycom04g09600 pycom05g07420
rosa_chinensis RchiOBHm_Chr7g0216341
rosa_laevigata RLG00000002580
rosa_roxburghii Rroxscaffold_3G00243310
rosa_rugosa Rorug07G0160000
rosa_samantha Rh7AG297500 Rh7CG317700 Rh7DG299900
rosa_wichuraiana Rw7G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 956, 992
AccB1I GGYRCC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 1503
AciI CCGC 3 cut(s) 449, 757, 1271
AclWI GGATC 4 cut(s) 605, 1102, 1184, 1471
AcoI YGGCCR 4 cut(s) 3, 421, 1085, 1494
AcsI RAATTY 3 cut(s) 399, 602, 620
AcyI GRCGYC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 1445
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 8 cut(s) 137, 164, 607, 809, 1010, 1204, 1302, 1511
AjiI CACGTC 1 cut(s) 51
AjnI CCWGG 2 cut(s) 117, 787
AleI CACNNNNGTG 2 cut(s) 321, 429
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 632, 648
AlwI GGATC 4 cut(s) 605, 1102, 1184, 1471
AoxI GGCC 6 cut(s) 3, 304, 421, 1085, 1341, 1494
ApeKI GCWGC 4 cut(s) 24, 407, 979, 1254
ApoI RAATTY 3 cut(s) 399, 602, 620
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 20, 396
AspS9I GGNCC 2 cut(s) 305, 1535
AsuHPI GGTGA 5 cut(s) 107, 338, 350, 679, 1457
AvaII GGWCC 1 cut(s) 1535
BalI TGGCCA 2 cut(s) 423, 1496
BanI GGYRCC 1 cut(s) 524
BanII GRGCYC 2 cut(s) 36, 1394
BauI CACGAG 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 36, 394, 966, 1266
BccI CCATC 2 cut(s) 909, 1288
BceAI ACGGC 2 cut(s) 319, 1223
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 2 cut(s) 119, 789
BciVI GTATCC 1 cut(s) 1035
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 632, 648
BfaI CTAG 3 cut(s) 542, 950, 1094
BfuI GTATCC 1 cut(s) 1035
BisI GCNGC 6 cut(s) 25, 408, 449, 758, 980, 1255
BlsI GCNGC 6 cut(s) 26, 409, 450, 759, 981, 1256
Bme1390I CCNGG 2 cut(s) 119, 789
Bme18I GGWCC 1 cut(s) 1535
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 2 cut(s) 305, 1535
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 2 cut(s) 119, 789
BmrI ACTGGG 1 cut(s) 1427
BmuI ACTGGG 1 cut(s) 1427
BpmI CTGGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 648
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bse118I RCCGGY 3 cut(s) 5, 62, 152
Bse1I ACTGG 3 cut(s) 1243, 1422, 1497
BseBI CCWGG 2 cut(s) 119, 789
BseGI GGATG 1 cut(s) 920
BseNI ACTGG 3 cut(s) 1243, 1422, 1497
BseRI GAGGAG 2 cut(s) 369, 372
BseXI GCAGC 4 cut(s) 36, 394, 966, 1266
BsgI GTGCAG 2 cut(s) 453, 1273
BshFI GGCC 6 cut(s) 5, 306, 423, 1087, 1343, 1496
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 4 cut(s) 6, 63, 153, 1088
BsmAI GTCTC 2 cut(s) 632, 648
BsmI GAATGC 3 cut(s) 255, 1135, 1369
BsnI GGCC 6 cut(s) 5, 306, 423, 1087, 1343, 1496
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 36, 1394
Bsp143I GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
BspACI CCGC 3 cut(s) 449, 757, 1271
BspANI GGCC 6 cut(s) 5, 306, 423, 1087, 1343, 1496
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 4 cut(s) 605, 1102, 1184, 1471
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 648
BsrFI RCCGGY 3 cut(s) 5, 62, 152
BsrI ACTGG 3 cut(s) 1243, 1422, 1497
BssAI RCCGGY 3 cut(s) 5, 62, 152
BssMI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
BssNI GRCGYC 1 cut(s) 44
BssSI CACGAG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 119, 789
Bst4CI ACNGT 5 cut(s) 320, 775, 870, 1428, 1539
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 22, 234, 371, 1085, 1394
BstDEI CTNAG 3 cut(s) 499, 697, 961
BstF5I GGATG 1 cut(s) 920
BstHHI GCGC 2 cut(s) 20, 396
BstKTI GATC 7 cut(s) 40, 316, 613, 827, 1110, 1179, 1466
BstMAI GTCTC 2 cut(s) 632, 648
BstMBI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
BstMWI GCNNNNNNNGC 3 cut(s) 24, 242, 895
BstNI CCWGG 2 cut(s) 119, 789
BstNSI RCATGY 1 cut(s) 1028
BstSCI CCNGG 2 cut(s) 117, 787
BstV1I GCAGC 4 cut(s) 36, 394, 966, 1266
BstXI CCANNNNNNTGG 2 cut(s) 100, 873
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 6 cut(s) 5, 306, 423, 1087, 1343, 1496
BtgZI GCGATG 2 cut(s) 226, 350
BtrI CACGTC 1 cut(s) 51
BtsCI GGATG 1 cut(s) 920
BtsI GCAGTG 1 cut(s) 578
BtsIMutI CAGTG 5 cut(s) 578, 771, 866, 1059, 1504
Cac8I GCNNGC 5 cut(s) 22, 234, 371, 1085, 1394
CfoI GCGC 2 cut(s) 20, 396
Cfr10I RCCGGY 3 cut(s) 5, 62, 152
Cfr13I GGNCC 2 cut(s) 305, 1535
CseI GACGC 2 cut(s) 52, 895
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 9 cut(s) 535, 754, 761, 911, 1025, 1193, 1385, 1450, 1492
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 3 cut(s) 499, 697, 961
DpnI GATC 7 cut(s) 39, 315, 612, 826, 1109, 1178, 1465
DpnII GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
DraIII CACNNNGTG 1 cut(s) 1445
EaeI YGGCCR 4 cut(s) 3, 421, 1085, 1494
Ecl136II GAGCTC 1 cut(s) 34
Eco147I AGGCCT 1 cut(s) 1343
Eco24I GRGCYC 2 cut(s) 36, 1394
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 1535
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 117, 787
EcoT22I ATGCAT 1 cut(s) 1282
EcoT38I GRGCYC 2 cut(s) 36, 1394
FaeI CATG 9 cut(s) 538, 757, 764, 914, 1028, 1196, 1388, 1453, 1495
FalI AAGNNNNNCTT 6 cut(s) 174, 206, 435, 467, 1304, 1336
FatI CATG 9 cut(s) 534, 753, 760, 910, 1024, 1192, 1384, 1449, 1491
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 1503
Fnu4HI GCNGC 6 cut(s) 25, 408, 449, 758, 980, 1255
FokI GGATG 1 cut(s) 927
FriOI GRGCYC 2 cut(s) 36, 1394
Fsp4HI GCNGC 6 cut(s) 25, 408, 449, 758, 980, 1255
FspBI CTAG 3 cut(s) 542, 950, 1094
GlaI GCGC 2 cut(s) 19, 395
GluI GCNGC 6 cut(s) 25, 408, 449, 758, 980, 1255
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 6 cut(s) 5, 306, 423, 1087, 1343, 1496
HapII CCGG 4 cut(s) 6, 63, 153, 1088
HgaI GACGC 2 cut(s) 52, 895
HhaI GCGC 2 cut(s) 20, 396
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 9 cut(s) 538, 757, 764, 914, 1028, 1196, 1388, 1453, 1495
Hin6I GCGC 2 cut(s) 18, 394
HinP1I GCGC 2 cut(s) 18, 394
HincII GTYRAC 1 cut(s) 1504
HindII GTYRAC 1 cut(s) 1504
HinfI GANTC 4 cut(s) 204, 556, 765, 858
HpaII CCGG 4 cut(s) 6, 63, 153, 1088
HphI GGTGA 5 cut(s) 107, 338, 350, 679, 1457
Hpy166II GTNNAC 3 cut(s) 866, 1424, 1504
Hpy188I TCNGA 5 cut(s) 42, 125, 713, 1128, 1220
Hpy188III TCNNGA 6 cut(s) 170, 260, 635, 748, 820, 1174
Hpy8I GTNNAC 3 cut(s) 866, 1424, 1504
Hpy99I CGWCG 2 cut(s) 52, 1508
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 5 cut(s) 320, 775, 870, 1428, 1539
HpyCH4IV ACGT 4 cut(s) 50, 139, 513, 1506
HpyCH4V TGCA 9 cut(s) 255, 272, 434, 481, 982, 1036, 1054, 1254, 1280
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 242, 895
HpyF3I CTNAG 3 cut(s) 499, 697, 961
HpySE526I ACGT 4 cut(s) 50, 139, 513, 1506
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 9 cut(s) 538, 757, 764, 914, 1028, 1196, 1388, 1453, 1495
HspAI GCGC 2 cut(s) 18, 394
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
LmnI GCTCC 2 cut(s) 391, 1090
Lsp1109I GCAGC 4 cut(s) 36, 394, 966, 1266
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 3 cut(s) 542, 950, 1094
MaeII ACGT 4 cut(s) 50, 139, 513, 1506
MaeIII GTNAC 6 cut(s) 326, 338, 769, 1057, 1285, 1445
MalI GATC 7 cut(s) 39, 315, 612, 826, 1109, 1178, 1465
MboI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
MboII GAAGA 8 cut(s) 104, 478, 484, 487, 558, 845, 1321, 1387
MhlI GDGCHC 2 cut(s) 36, 1394
MlsI TGGCCA 2 cut(s) 423, 1496
MluCI AATT 6 cut(s) 96, 399, 602, 620, 716, 987
MluNI TGGCCA 2 cut(s) 423, 1496
MmeI TCCRAC 4 cut(s) 103, 650, 736, 949
Mox20I TGGCCA 2 cut(s) 423, 1496
Mph1103I ATGCAT 1 cut(s) 1282
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 2 cut(s) 423, 1496
MseI TTAA 4 cut(s) 180, 551, 843, 1346
MslI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
Msp20I TGGCCA 2 cut(s) 423, 1496
MspI CCGG 4 cut(s) 6, 63, 153, 1088
MspR9I CCNGG 2 cut(s) 119, 789
Mva1269I GAATGC 3 cut(s) 255, 1135, 1369
MvaI CCWGG 2 cut(s) 119, 789
MwoI GCNNNNNNNGC 3 cut(s) 24, 242, 895
NdeII GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
NlaIII CATG 9 cut(s) 538, 757, 764, 914, 1028, 1196, 1388, 1453, 1495
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 5 cut(s) 326, 338, 769, 1057, 1445
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 1 cut(s) 1028
OliI CACNNNNGTG 2 cut(s) 321, 429
PceI AGGCCT 1 cut(s) 1343
PctI GAATGC 3 cut(s) 255, 1135, 1369
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 204, 556, 765, 858
PkrI GCNGC 6 cut(s) 26, 409, 450, 759, 981, 1256
PsiI TTATAA 2 cut(s) 956, 992
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 117, 787
PspGI CCWGG 2 cut(s) 117, 787
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 2 cut(s) 305, 1535
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 1502
SaqAI TTAA 4 cut(s) 180, 551, 843, 1346
SatI GCNGC 6 cut(s) 25, 408, 449, 758, 980, 1255
Sau3AI GATC 7 cut(s) 37, 313, 610, 824, 1107, 1176, 1463
Sau96I GGNCC 2 cut(s) 305, 1535
ScrFI CCNGG 2 cut(s) 119, 789
SduI GDGCHC 2 cut(s) 36, 1394
SexAI ACCWGGT 1 cut(s) 117
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 1 cut(s) 1535
SmiMI CAYNNNNRTG 4 cut(s) 321, 429, 533, 871
Sse9I AATT 6 cut(s) 96, 399, 602, 620, 716, 987
SseBI AGGCCT 1 cut(s) 1343
SsiI CCGC 3 cut(s) 449, 757, 1271
SspMI CTAG 3 cut(s) 542, 950, 1094
SstI GAGCTC 1 cut(s) 36
StuI AGGCCT 1 cut(s) 1343
StyD4I CCNGG 2 cut(s) 117, 787
TaaI ACNGT 5 cut(s) 320, 775, 870, 1428, 1539
TaiI ACGT 4 cut(s) 53, 142, 516, 1509
TaqI TCGA 2 cut(s) 36, 1503
TasI AATT 6 cut(s) 96, 399, 602, 620, 716, 987
TauI GCSGC 2 cut(s) 451, 760
TfiI GAWTC 4 cut(s) 204, 556, 765, 858
Tru1I TTAA 4 cut(s) 180, 551, 843, 1346
Tru9I TTAA 4 cut(s) 180, 551, 843, 1346
TscAI CASTG 5 cut(s) 578, 778, 873, 1066, 1504
TseFI GTSAC 5 cut(s) 326, 338, 769, 1057, 1445
TseI GCWGC 4 cut(s) 24, 407, 979, 1254
Tsp45I GTSAC 5 cut(s) 326, 338, 769, 1057, 1445
TspDTI ATGAA 6 cut(s) 196, 478, 767, 899, 1322, 1341
TspRI CASTG 5 cut(s) 578, 778, 873, 1066, 1504
VpaK11BI GGWCC 1 cut(s) 1535
XapI RAATTY 3 cut(s) 399, 602, 620
XceI RCATGY 1 cut(s) 1028
XmiI GTMKAC 1 cut(s) 1503
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 542, 950, 1094
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.