Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003737

Physical Location & Seq

Genomic Coordinates Reverse (-)

16439367 .. 16441941

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCGTTTCTGAGTATTGTTCGTGATGTTAGAGATACTGTAGGAAGCTTTTCGAGACGTAGTTTCGACGTGAGAGTATCTAATGGGACGACTCATCAGAGGAGTAAATCTCACGGTGTTGAGGCACATATTGAAGATCTTATTGTAATCAAGAACACTCGTTGGGCTAATTTACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAGCGAGAGTACTTGGCCTGCACGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACATGGAGACTAATGTGCAAAGATATTGTGAAAAGTCCTGAGTTCTCAGGCAAACTCACATTTCCAGTTTCGTTGAAACAGCCCGGGCCTAGGGATGGAATCATACAATGTTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTTTACCTTTCTCTTAGTCCTGCCATACTTGTTGAAAGTGGGAAGTTTCTTCTCTCGGCAAAGCGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCAAGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGGACAAAATTTATAGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCACCAAACCGGAGTCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGTTACAACATTGCTCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTAGAATGAACTGCATTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCTAGCCAACCTGAGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCAAAGATAGTCAACCACTCGGGAGATTTCACCCGACCGAAAGAGGAAGAAGGAAAGGTGCGACCTTTGGTACTGAAAACTAAACCGCCAAGGTGGCTCCAACCGTTGCGATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCAGTTGATGTCCGCTGCAACGGTTCAGCCCGGTAGTGGTAGTGATGGTGGAGCATTGGCTACGAGGCCATCGTTATCACCACAGCAGCCAGAGCAATCAAACCATGATAAGATAATACTACACTTTGGGAAAGTGGGTAAGGATATGTTCACTATGGACTATCGTTATCCTCTCTCTGCCTTTCAAGCGTTTGCCATTTCCCTGAGCACCTTTGATACTAAATTGGCATGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

429

Amino Acids

47.84

Weight (kDa)

9.85

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tub	PF01167	50 - 358	2.7e-102	Tub family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43640 AT1G43640 AT1G76900 AT1G76900 AT1G76900
fragaria_vesca	FvH4_2g13720 FvH4_2g13720 FvH4_2g13720 FvH4_2g13720
malus_domestica	MD05G1025500.v1.1 MD10G1025600.v1.1
prunus_persica	Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1
pyrus_communis	pycom05g01660 pycom10g01690
rosa_chinensis	RchiOBHm_Chr6g0275391
rosa_laevigata	RLG00000013466
rosa_multiflora	Rmu_sc0004143.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193350
rosa_rugosa	Rorug06G0091300 Rorug06G0091300 Rorug06G0091400 Rorug06G0091500 Rorug06G0091600 Rorug06G0091700 Rorug06G0091800
rosa_samantha	Rh6AG205200 Rh6BG208200 Rh6CG210400 Rh6DG200800
rosa_wichuraiana	Rw6G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1005
AciI	CCGC	3 cut(s)	874, 974, 1065
AclI	AACGTT	1 cut(s)	853
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	4 cut(s)	226, 626, 823, 960
AfeI	AGCGCT	1 cut(s)	485
AfiI	CCNNNNNNNGG	3 cut(s)	363, 368, 1088
AgsI	TTSAA	7 cut(s)	134, 349, 455, 543, 673, 1018, 1238
AjiI	CACGTC	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AluBI	AGCT	5 cut(s)	48, 497, 739, 806, 1037
AluI	AGCT	5 cut(s)	48, 497, 739, 806, 1037
Alw21I	GWGCWC	1 cut(s)	1262
Alw26I	GTCTC	4 cut(s)	49, 274, 390, 693
Ama87I	CYCGRG	2 cut(s)	356, 907
Aor51HI	AGCGCT	1 cut(s)	485
AoxI	GGCC	3 cut(s)	230, 359, 1118
ApeKI	GCWGC	5 cut(s)	179, 552, 876, 1067, 1138
ApoI	RAATTY	1 cut(s)	596
Asp700I	GAANNNNTTC	1 cut(s)	49
AspA2I	CCTAGG	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	184, 486
AspS9I	GGNCC	2 cut(s)	359, 761
AsuC2I	CCSGG	4 cut(s)	357, 358, 816, 1083
AsuHPI	GGTGA	2 cut(s)	910, 1122
AvaI	CYCGRG	2 cut(s)	356, 907
AvaII	GGWCC	1 cut(s)	761
AvrII	CCTAGG	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1262
BbvI	GCAGC	5 cut(s)	166, 564, 888, 1054, 1150
BccI	CCATC	3 cut(s)	362, 1091, 1129
BceAI	ACGGC	1 cut(s)	630
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BcnI	CCSGG	4 cut(s)	357, 358, 816, 1083
BcoDI	GTCTC	4 cut(s)	49, 274, 390, 693
BfaI	CTAG	4 cut(s)	363, 587, 809, 831
BfmI	CTRYAG	2 cut(s)	39, 1032
BfoI	RGCGCY	1 cut(s)	487
BglI	GCCNNNNNGGC	1 cut(s)	982
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	5 cut(s)	180, 553, 877, 1068, 1139
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	5 cut(s)	181, 554, 878, 1069, 1140
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	4 cut(s)	357, 358, 816, 1083
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	2 cut(s)	356, 907
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	359, 761
BmiI	GGNNCC	5 cut(s)	618, 754, 886, 986, 1007
BmrFI	CCNGG	4 cut(s)	357, 358, 816, 1083
BmsI	GCATC	2 cut(s)	517, 888
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
Bpu10I	CCTNAGC	2 cut(s)	802, 1256
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	4 cut(s)	357, 358, 816, 1083
BsaAI	YACGTR	1 cut(s)	239
BsaJI	CCNNGG	4 cut(s)	356, 362, 757, 977
BsaWI	WCCGGW	1 cut(s)	657
BsaXI	ACNNNNNCTCC	4 cut(s)	652, 682, 810, 840
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 368, 1088
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	2 cut(s)	338, 1054
Bse3DI	GCAATG	1 cut(s)	717
BseDI	CCNNGG	4 cut(s)	356, 362, 757, 977
BseGI	GGATG	3 cut(s)	217, 373, 532
BseLI	CCNNNNNNNGG	3 cut(s)	363, 368, 1088
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	4 cut(s)	303, 333, 831, 1247
BseNI	ACTGG	2 cut(s)	338, 1054
BseRI	GAGGAG	1 cut(s)	115
BseXI	GCAGC	5 cut(s)	166, 564, 888, 1054, 1150
BsgI	GTGCAG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	926
BshFI	GGCC	3 cut(s)	232, 361, 1120
BshNI	GGYRCC	1 cut(s)	1005
BsiEI	CGRYCG	1 cut(s)	926
BsiHKAI	GWGCWC	1 cut(s)	1262
BsiHKCI	CYCGRG	2 cut(s)	356, 907
BsiSI	CCGG	5 cut(s)	176, 357, 658, 816, 1083
BslFI	GGGAC	5 cut(s)	100, 604, 631, 683, 812
BslI	CCNNNNNNNGG	3 cut(s)	363, 368, 1088
BsmAI	GTCTC	4 cut(s)	49, 274, 390, 693
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	5 cut(s)	100, 604, 631, 683, 812
BsnI	GGCC	3 cut(s)	232, 361, 1120
BsoBI	CYCGRG	2 cut(s)	356, 907
Bsp1286I	GDGCHC	1 cut(s)	1262
Bsp143I	GATC	2 cut(s)	136, 545
BspACI	CCGC	3 cut(s)	874, 974, 1065
BspANI	GGCC	3 cut(s)	232, 361, 1120
BspCNI	CTCAG	4 cut(s)	304, 332, 832, 1248
BspLI	GGNNCC	5 cut(s)	618, 754, 886, 986, 1007
BspT107I	GGYRCC	1 cut(s)	1005
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	338, 1054
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	4 cut(s)	356, 362, 757, 977
BssMI	GATC	2 cut(s)	136, 545
BssT1I	CCWWGG	2 cut(s)	362, 977
Bst4CI	ACNGT	7 cut(s)	40, 116, 632, 826, 993, 1033, 1075
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	7 cut(s)	11, 312, 319, 434, 802, 840, 1256
BstDSI	CCRYGG	1 cut(s)	757
BstF5I	GGATG	3 cut(s)	217, 373, 532
BstH2I	RGCGCY	1 cut(s)	487
BstHHI	GCGC	2 cut(s)	184, 486
BstKTI	GATC	2 cut(s)	139, 548
BstMAI	GTCTC	4 cut(s)	49, 274, 390, 693
BstMBI	GATC	2 cut(s)	136, 545
BstMCI	CGRYCG	1 cut(s)	926
BstMWI	GCNNNNNNNGC	4 cut(s)	745, 982, 1144, 1238
BstNSI	RCATGY	1 cut(s)	1284
BstSCI	CCNGG	4 cut(s)	355, 356, 814, 1081
BstSFI	CTRYAG	2 cut(s)	39, 1032
BstV1I	GCAGC	5 cut(s)	166, 564, 888, 1054, 1150
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	232, 361, 1120
BtgI	CCRYGG	1 cut(s)	757
BtgZI	GCGATG	1 cut(s)	1012
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	217, 373, 532
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	184, 486
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	359, 761
Cfr9I	CCCGGG	1 cut(s)	356
Csp6I	GTAC	4 cut(s)	225, 625, 822, 959
CviAII	CATG	4 cut(s)	276, 409, 1157, 1281
CviQI	GTAC	4 cut(s)	225, 625, 822, 959
DdeI	CTNAG	7 cut(s)	11, 312, 319, 434, 802, 840, 1256
DpnI	GATC	2 cut(s)	138, 547
DpnII	GATC	2 cut(s)	136, 545
Eco130I	CCWWGG	2 cut(s)	362, 977
Eco47I	GGWCC	1 cut(s)	761
Eco47III	AGCGCT	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	2 cut(s)	356, 907
EcoT14I	CCWWGG	2 cut(s)	362, 977
ErhI	CCWWGG	2 cut(s)	362, 977
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	279, 412, 1160, 1284
FalI	AAGNNNNNCTT	4 cut(s)	541, 573, 566, 598
FaqI	GGGAC	5 cut(s)	100, 604, 631, 683, 812
FatI	CATG	4 cut(s)	275, 408, 1156, 1280
Fnu4HI	GCNGC	5 cut(s)	180, 553, 877, 1068, 1139
FokI	GGATG	3 cut(s)	224, 380, 539
Fsp4HI	GCNGC	5 cut(s)	180, 553, 877, 1068, 1139
FspBI	CTAG	4 cut(s)	363, 587, 809, 831
GlaI	GCGC	2 cut(s)	183, 485
GluI	GCNGC	5 cut(s)	180, 553, 877, 1068, 1139
HaeII	RGCGCY	1 cut(s)	487
HaeIII	GGCC	3 cut(s)	232, 361, 1120
HapII	CCGG	5 cut(s)	176, 357, 658, 816, 1083
HhaI	GCGC	2 cut(s)	184, 486
Hin1II	CATG	4 cut(s)	279, 412, 1160, 1284
Hin6I	GCGC	2 cut(s)	182, 484
HinP1I	GCGC	2 cut(s)	182, 484
HincII	GTYRAC	1 cut(s)	901
HindII	GTYRAC	1 cut(s)	901
HindIII	AAGCTT	1 cut(s)	46
HinfI	GANTC	4 cut(s)	91, 372, 661, 866
HpaII	CCGG	5 cut(s)	176, 357, 658, 816, 1083
HphI	GGTGA	2 cut(s)	910, 1122
Hpy166II	GTNNAC	4 cut(s)	242, 761, 901, 1203
Hpy188I	TCNGA	2 cut(s)	12, 99
Hpy188III	TCNNGA	9 cut(s)	23, 54, 151, 311, 543, 705, 809, 909, 1045
Hpy8I	GTNNAC	4 cut(s)	242, 761, 901, 1203
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	711, 932
HpyCH4III	ACNGT	7 cut(s)	40, 116, 632, 826, 993, 1033, 1075
HpyCH4IV	ACGT	4 cut(s)	58, 69, 238, 853
HpyCH4V	TGCA	7 cut(s)	236, 270, 291, 530, 780, 787, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	745, 982, 1144, 1238
HpyF3I	CTNAG	7 cut(s)	11, 312, 319, 434, 802, 840, 1256
HpySE526I	ACGT	4 cut(s)	58, 69, 238, 853
Hsp92II	CATG	4 cut(s)	279, 412, 1160, 1284
HspAI	GCGC	2 cut(s)	182, 484
Kzo9I	GATC	2 cut(s)	136, 545
LmnI	GCTCC	3 cut(s)	622, 990, 1103
Lsp1109I	GCAGC	5 cut(s)	166, 564, 888, 1054, 1150
LweI	GCATC	2 cut(s)	517, 888
MaeI	CTAG	4 cut(s)	363, 587, 809, 831
MaeII	ACGT	4 cut(s)	58, 69, 238, 853
MaeIII	GTNAC	3 cut(s)	710, 727, 1027
MalI	GATC	2 cut(s)	138, 547
MboI	GATC	2 cut(s)	136, 545
MboII	GAAGA	3 cut(s)	146, 461, 947
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	1262
MluCI	AATT	3 cut(s)	169, 596, 1274
MlyI	GAGTC	2 cut(s)	85, 670
MmeI	TCCRAC	2 cut(s)	189, 1012
MnlI	CCTC	9 cut(s)	93, 115, 774, 808, 812, 898, 925, 1110, 1233
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	1011
MspA1I	CMGCKG	1 cut(s)	1067
MspI	CCGG	5 cut(s)	176, 357, 658, 816, 1083
MspR9I	CCNGG	4 cut(s)	357, 358, 816, 1083
MwoI	GCNNNNNNNGC	4 cut(s)	745, 982, 1144, 1238
NciI	CCSGG	4 cut(s)	357, 358, 816, 1083
NdeII	GATC	2 cut(s)	136, 545
NlaIII	CATG	4 cut(s)	279, 412, 1160, 1284
NlaIV	GGNNCC	5 cut(s)	618, 754, 886, 986, 1007
NmeAIII	GCCGAG	1 cut(s)	455
NmuCI	GTSAC	1 cut(s)	1027
NspI	RCATGY	1 cut(s)	1284
PcsI	WCGNNNNNNNCGW	2 cut(s)	620, 1121
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	372, 866
PkrI	GCNGC	5 cut(s)	181, 554, 878, 1069, 1140
PleI	GAGTC	2 cut(s)	85, 669
PpsI	GAGTC	2 cut(s)	85, 669
Ppu21I	YACGTR	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	853
PspN4I	GGNNCC	5 cut(s)	618, 754, 886, 986, 1007
PspPI	GGNCC	2 cut(s)	359, 761
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	4 cut(s)	226, 626, 823, 960
RsaNI	GTAC	4 cut(s)	225, 625, 822, 959
SaqAI	TTAA	1 cut(s)	1011
SatI	GCNGC	5 cut(s)	180, 553, 877, 1068, 1139
Sau3AI	GATC	2 cut(s)	136, 545
Sau96I	GGNCC	2 cut(s)	359, 761
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	2 cut(s)	85, 670
ScrFI	CCNGG	4 cut(s)	357, 358, 816, 1083
SduI	GDGCHC	1 cut(s)	1262
SfaNI	GCATC	2 cut(s)	517, 888
SfcI	CTRYAG	2 cut(s)	39, 1032
SinI	GGWCC	1 cut(s)	761
SmaI	CCCGGG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SrfI	GCCCGGGC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	169, 596, 1274
SsiI	CCGC	3 cut(s)	874, 974, 1065
SspMI	CTAG	4 cut(s)	363, 587, 809, 831
StyD4I	CCNGG	4 cut(s)	355, 356, 814, 1081
StyI	CCWWGG	2 cut(s)	362, 977
TaaI	ACNGT	7 cut(s)	40, 116, 632, 826, 993, 1033, 1075
TaiI	ACGT	4 cut(s)	61, 72, 241, 856
TaqI	TCGA	2 cut(s)	53, 66
TaqII	GACCGA	1 cut(s)	940
TasI	AATT	3 cut(s)	169, 596, 1274
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	372, 866
Tru1I	TTAA	1 cut(s)	1011
Tru9I	TTAA	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	1027
TseI	GCWGC	5 cut(s)	179, 552, 876, 1067, 1138
Tsp45I	GTSAC	1 cut(s)	1027
TspDTI	ATGAA	4 cut(s)	215, 228, 788, 879
TspGWI	ACGGA	1 cut(s)	505
TspMI	CCCGGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	808
XceI	RCATGY	1 cut(s)	1284
XmaI	CCCGGG	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	4 cut(s)	363, 587, 809, 831
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.