Rroxscaffold_7G00193350

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
34813480 .. 34817877
4398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193350.1

Sequence Viewer

Length: 1071 bp
ATGTCGTTTCGCAGTATAGTTCGGGATGTAAGAGATGGGTTTGGAAGTTTATCGAGACGAAGTTTTGAGGTGAGACTGCCTGGCCATCACAGGGGAAAATCACATGGTTCAGTCCATGAGCTGCATGACCAACCTCTTGTAATCCAGAATAGCCGCTGGGCTAGCCTCCCACCTGAACTACTTCGGGATGTAATAAAAAGGTTGGAGGCTAGTGAGGGTACGTGGCCTGCTCGCAAGCATGTTGTTGCTTGTGCTTCTGTATGCAGGTCATGGAGGGAAATGTGCAAAGAAATTGTCAAAAGTCCTGAATTTTCTGGGAAGATTACTTTCCCAGTCTCCCTGAAGCAGCCAGGATCTCGGGATGGAACAATCCAGTGCTTTATCAAAAGGGACAAGTCTAATTTAACCTACCACCTTTACCTGTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGAAAATTTCTTCTGTCTGCTAAGCGAACACGAAGAACTACTTGCACAGAGTATGTGATCTCGATGGATGCAGATAACATATCAAGATCAAGTAACACTTACATTGGGAAACTGAGATCCAATTTTCTGGGTACCAAGTTCATTATTTATGATACCCAGCCTCCCTACAACAGTTCTCAGCTTTCCCCACCTGGCCGAAGTCGTCGGTTTAACTCAAAAAAGGTTTCTCCTAAGGTCCCTACTGGCAGCTACAACATTGCTCAAGTGACATATGAGTTAAATGTGCTCGGCACTAGGGGGCCACGCAGAATGCACTGCAGCATGCACTCAATCCCTGTCTCATCCCTTGAGCCTGGTGGCTCTGTCCCTGGCCAGCCCGAGCTTCTCCAGCGCTCCCTTGAGGACTCATTCCGGAGCATTTCCTTCTCAAAATCAATTGATAATTCAACTGAGTTTAGCAGTGCTCGATTCTCTGATATTGTTGGGGGGTCATCCCGTTATGAAGAGGAGGGAAAGGAGAGGCCTCTGGTTCTTCGGAACAAGGCACCGAGATGGCATGAGCAGTTGCAGTGTTGGTGCCTAAACTTCCGGGGGGCGGGTGACGGTTGCCTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

356

Amino Acids

40.13

Weight (kDa)

9.72

Isoelectric Point (pI)

68.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 96 6.6e-07 F-box-like
Tub PF01167 114 - 349 1.7e-70 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
Acc65I GGTACC 1 cut(s) 584
AccB1I GGYRCC 3 cut(s) 584, 997, 1029
AccIII TCCGGA 1 cut(s) 864
AciI CCGC 2 cut(s) 154, 1049
AclWI GGATC 2 cut(s) 361, 564
AcoI YGGCCR 3 cut(s) 82, 646, 823
AcsI RAATTY 2 cut(s) 308, 458
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 2 cut(s) 220, 586
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 91, 1048
AgsI TTSAA 2 cut(s) 449, 900
AjnI CCWGG 5 cut(s) 79, 349, 643, 805, 820
AluBI AGCT 4 cut(s) 121, 634, 702, 835
AluI AGCT 4 cut(s) 121, 634, 702, 835
Alw21I GWGCWC 2 cut(s) 741, 919
Alw26I GTCTC 4 cut(s) 49, 67, 340, 796
AlwI GGATC 2 cut(s) 361, 564
Ama87I CYCGRG 2 cut(s) 357, 830
Aor13HI TCCGGA 1 cut(s) 864
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 6 cut(s) 82, 224, 646, 752, 823, 974
ApeKI GCWGC 4 cut(s) 121, 346, 699, 771
ApoI RAATTY 2 cut(s) 308, 458
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
Asp700I GAANNNNTTC 1 cut(s) 180
Asp718I GGTACC 1 cut(s) 584
AspLEI GCGC 1 cut(s) 846
AspS9I GGNCC 2 cut(s) 688, 752
AsuC2I CCSGG 1 cut(s) 1043
AsuHPI GGTGA 2 cut(s) 82, 1064
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 357, 830
AvaII GGWCC 1 cut(s) 688
AxyI CCTNAGG 1 cut(s) 684
BalI TGGCCA 2 cut(s) 84, 825
BanI GGYRCC 3 cut(s) 584, 997, 1029
Bbv12I GWGCWC 2 cut(s) 741, 919
BbvI GCAGC 4 cut(s) 108, 358, 711, 783
BccI CCATC 5 cut(s) 29, 93, 356, 511, 999
BciT130I CCWGG 5 cut(s) 81, 351, 645, 807, 822
BcnI CCSGG 1 cut(s) 1043
BcoDI GTCTC 4 cut(s) 49, 67, 340, 796
BfaI CTAG 3 cut(s) 162, 210, 747
BfmI CTRYAG 1 cut(s) 769
BfoI RGCGCY 1 cut(s) 847
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 5 cut(s) 122, 154, 347, 700, 772
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 5 cut(s) 123, 155, 348, 701, 773
Bme1390I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 357, 830
BmgT120I GGNCC 2 cut(s) 688, 752
BmiI GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
BmrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 1 cut(s) 511
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 3 cut(s) 699, 821, 872
BpuMI CCSGG 1 cut(s) 1043
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 820, 1042
BsaWI WCCGGW 1 cut(s) 864
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 1048
Bse1I ACTGG 3 cut(s) 332, 373, 700
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BseDI CCNNGG 2 cut(s) 820, 1042
BseGI GGATG 6 cut(s) 31, 193, 367, 526, 794, 944
BseLI CCNNNNNNNGG 2 cut(s) 91, 1048
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 3 cut(s) 557, 644, 894
BseNI ACTGG 3 cut(s) 332, 373, 700
BseRI GAGGAG 1 cut(s) 974
BseXI GCAGC 4 cut(s) 108, 358, 711, 783
BseYI CCCAGC 2 cut(s) 156, 609
BshFI GGCC 6 cut(s) 84, 226, 648, 754, 825, 976
BshNI GGYRCC 3 cut(s) 584, 997, 1029
BsiHKAI GWGCWC 2 cut(s) 741, 919
BsiHKCI CYCGRG 2 cut(s) 357, 830
BsiSI CCGG 2 cut(s) 865, 1042
BslFI GGGAC 3 cut(s) 404, 674, 803
BslI CCNNNNNNNGG 2 cut(s) 91, 1048
BsmAI GTCTC 4 cut(s) 49, 67, 340, 796
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 3 cut(s) 404, 674, 803
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 6 cut(s) 84, 226, 648, 754, 825, 976
BsoBI CYCGRG 2 cut(s) 357, 830
Bsp1286I GDGCHC 2 cut(s) 741, 919
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 4 cut(s) 353, 510, 539, 569
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 2 cut(s) 154, 1049
BspANI GGCC 6 cut(s) 84, 226, 648, 754, 825, 976
BspCNI CTCAG 3 cut(s) 558, 643, 895
BspEI TCCGGA 1 cut(s) 864
BspLI GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
BspMAI CTGCAG 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 361, 564
BspT107I GGYRCC 3 cut(s) 584, 997, 1029
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 3 cut(s) 332, 373, 700
BssECI CCNNGG 2 cut(s) 820, 1042
BssMI GATC 4 cut(s) 353, 510, 539, 569
Bst2UI CCWGG 5 cut(s) 81, 351, 645, 807, 822
Bst4CI ACNGT 2 cut(s) 626, 1058
Bst6I CTCTTC 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 6 cut(s) 163, 228, 232, 236, 776, 827
BstDEI CTNAG 6 cut(s) 428, 474, 566, 630, 684, 903
BstF5I GGATG 6 cut(s) 31, 193, 367, 526, 794, 944
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 4 cut(s) 356, 513, 542, 572
BstMAI GTCTC 4 cut(s) 49, 67, 340, 796
BstMBI GATC 4 cut(s) 353, 510, 539, 569
BstMWI GCNNNNNNNGC 2 cut(s) 162, 841
BstNI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BstNSI RCATGY 2 cut(s) 242, 778
BstSCI CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1041
BstSFI CTRYAG 1 cut(s) 769
BstV1I GCAGC 4 cut(s) 108, 358, 711, 783
BstX2I RGATCY 2 cut(s) 353, 569
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 2 cut(s) 353, 569
Bsu36I CCTNAGG 1 cut(s) 684
BsuRI GGCC 6 cut(s) 84, 226, 648, 754, 825, 976
BtsCI GGATG 6 cut(s) 31, 193, 367, 526, 794, 944
BtsI GCAGTG 3 cut(s) 766, 919, 1028
BtsIMutI CAGTG 4 cut(s) 380, 766, 919, 1028
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 6 cut(s) 163, 228, 232, 236, 776, 827
CfoI GCGC 1 cut(s) 846
Cfr13I GGNCC 2 cut(s) 688, 752
Csp6I GTAC 2 cut(s) 219, 585
CviAII CATG 7 cut(s) 104, 116, 125, 239, 270, 775, 1010
CviQI GTAC 2 cut(s) 219, 585
DdeI CTNAG 6 cut(s) 428, 474, 566, 630, 684, 903
DpnI GATC 4 cut(s) 355, 512, 541, 571
DpnII GATC 4 cut(s) 353, 510, 539, 569
EaeI YGGCCR 3 cut(s) 82, 646, 823
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Eco147I AGGCCT 1 cut(s) 976
Eco47I GGWCC 1 cut(s) 688
Eco47III AGCGCT 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 684
Eco88I CYCGRG 2 cut(s) 357, 830
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 5 cut(s) 79, 349, 643, 805, 820
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 7 cut(s) 107, 119, 128, 242, 273, 778, 1013
FalI AAGNNNNNCTT 4 cut(s) 478, 510, 535, 567
FaqI GGGAC 3 cut(s) 404, 674, 803
FatI CATG 7 cut(s) 103, 115, 124, 238, 269, 774, 1009
FauI CCCGC 1 cut(s) 1042
FauNDI CATATG 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 122, 154, 347, 700, 772
FokI GGATG 6 cut(s) 38, 200, 374, 533, 781, 931
Fsp4HI GCNGC 5 cut(s) 122, 154, 347, 700, 772
FspBI CTAG 3 cut(s) 162, 210, 747
GlaI GCGC 1 cut(s) 845
GluI GCNGC 5 cut(s) 122, 154, 347, 700, 772
GsaI CCCAGC 2 cut(s) 160, 613
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 6 cut(s) 84, 226, 648, 754, 825, 976
HapII CCGG 2 cut(s) 865, 1042
HhaI GCGC 1 cut(s) 846
Hin1II CATG 7 cut(s) 107, 119, 128, 242, 273, 778, 1013
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HinfI GANTC 2 cut(s) 857, 921
HpaII CCGG 2 cut(s) 865, 1042
HphI GGTGA 2 cut(s) 82, 1064
Hpy188I TCNGA 2 cut(s) 928, 990
Hpy188III TCNNGA 9 cut(s) 23, 54, 145, 185, 305, 359, 514, 537, 865
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 1 cut(s) 886
HpyCH4III ACNGT 2 cut(s) 626, 1058
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 9 cut(s) 124, 264, 285, 498, 524, 766, 771, 778, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 162, 841
HpyF3I CTNAG 6 cut(s) 428, 474, 566, 630, 684, 903
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 7 cut(s) 107, 119, 128, 242, 273, 778, 1013
HspAI GCGC 1 cut(s) 844
Kpn2I TCCGGA 1 cut(s) 864
KpnI GGTACC 1 cut(s) 588
Kzo9I GATC 4 cut(s) 353, 510, 539, 569
LmnI GCTCC 2 cut(s) 851, 867
Lsp1109I GCAGC 4 cut(s) 108, 358, 711, 783
LweI GCATC 1 cut(s) 511
MaeI CTAG 3 cut(s) 162, 210, 747
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 545, 718, 1052
MalI GATC 4 cut(s) 355, 512, 541, 571
MboI GATC 4 cut(s) 353, 510, 539, 569
MboII GAAGA 5 cut(s) 331, 455, 498, 968, 977
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 2 cut(s) 353, 569
MhlI GDGCHC 2 cut(s) 741, 919
MlsI TGGCCA 2 cut(s) 84, 825
MluCI AATT 7 cut(s) 291, 308, 400, 458, 574, 888, 895
MluNI TGGCCA 2 cut(s) 84, 825
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 2 cut(s) 84, 825
MroI TCCGGA 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 2 cut(s) 84, 825
MseI TTAA 4 cut(s) 404, 663, 731, 1069
MslI CAYNNNNRTG 1 cut(s) 1003
Msp20I TGGCCA 2 cut(s) 84, 825
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 2 cut(s) 865, 1042
MspR9I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 5 cut(s) 81, 351, 645, 807, 822
MwoI GCNNNNNNNGC 2 cut(s) 162, 841
NciI CCSGG 1 cut(s) 1043
NdeI CATATG 1 cut(s) 724
NdeII GATC 4 cut(s) 353, 510, 539, 569
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 7 cut(s) 107, 119, 128, 242, 273, 778, 1013
NlaIV GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
NmeAIII GCCGAG 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 718, 1052
NspI RCATGY 2 cut(s) 242, 778
PaeI GCATGC 1 cut(s) 778
PceI AGGCCT 1 cut(s) 976
PctI GAATGC 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 921
PkrI GCNGC 5 cut(s) 123, 155, 348, 701, 773
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspFI CCCAGC 2 cut(s) 156, 609
PspGI CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspN4I GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
PspPI GGNCC 2 cut(s) 688, 752
PspPPI RGGWCCY 1 cut(s) 688
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 2 cut(s) 353, 569
RsaI GTAC 2 cut(s) 220, 586
RsaNI GTAC 2 cut(s) 219, 585
RseI CAYNNNNRTG 1 cut(s) 1003
SaqAI TTAA 4 cut(s) 404, 663, 731, 1069
SatI GCNGC 5 cut(s) 122, 154, 347, 700, 772
Sau3AI GATC 4 cut(s) 353, 510, 539, 569
Sau96I GGNCC 2 cut(s) 688, 752
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
SduI GDGCHC 2 cut(s) 741, 919
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 1 cut(s) 769
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 1003
SmlI CTYRAG 3 cut(s) 714, 800, 851
SmoI CTYRAG 3 cut(s) 714, 800, 851
SphI GCATGC 1 cut(s) 778
Sse9I AATT 7 cut(s) 291, 308, 400, 458, 574, 888, 895
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 2 cut(s) 154, 1049
SspMI CTAG 3 cut(s) 162, 210, 747
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1041
TaaI ACNGT 2 cut(s) 626, 1058
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 53, 515, 919
TasI AATT 7 cut(s) 291, 308, 400, 458, 574, 888, 895
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 1 cut(s) 921
Tru1I TTAA 4 cut(s) 404, 663, 731, 1069
Tru9I TTAA 4 cut(s) 404, 663, 731, 1069
TscAI CASTG 4 cut(s) 380, 773, 919, 1028
TseFI GTSAC 2 cut(s) 718, 1052
TseI GCWGC 4 cut(s) 121, 346, 699, 771
Tsp45I GTSAC 2 cut(s) 718, 1052
TspDTI ATGAA 2 cut(s) 583, 969
TspRI CASTG 4 cut(s) 380, 773, 919, 1028
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 2 cut(s) 308, 458
XceI RCATGY 2 cut(s) 242, 778
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 3 cut(s) 162, 210, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.