Rmu_sc0004143.1_g000007

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004143.1
Physical Location & Seq
Reverse (-)
49457 .. 52377
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004143.1_g000007.1.cds

Sequence Viewer

Length: 1290 bp
atgtcgtttcgcagtatagttcgggatgtaagagatgggtttggaagtttatctagacgaagttttgaggtgagactgcctggccatcacaggggaaaatcacatggttcagtccatgagctgcatgatcaccctcttgtaatccagaatagccgctgggctagcctcccacctgaactacttcgggatgtaataaaaaggttggaggctagtgagggtacgtggcctgctcgcaggcatgttgttgcttgtgcttctgtatgcaggtcatggagggaaatgtgcaaagaaattgtcaaaagtcctgaattttctgggaagattactttcccagtctccctgaagcagccaggatctcgggatggaacaatccagtgctttatcaaaagggacaagtctaatttaacctaccacctttacctgtgccttagccctgctttgcttgttgaaaatggaaaatttcttctgtctgctaagcgaacacgaagaactacttgcacagagtatgtgatctcgatggatgcagataacatatcaagatcaagtaacacttacattgggaaactgagatccaattttctgggcaccaagttcattatttatgatacccagcctccctacaacagttctcagctttccccacctggccgaagtcgtcggtttaactcaaaaaaggtttctcctaaggttcctactggcagctacaacattgctcaagtgacatatgagttaaatgtgctcggcactagggggccacgcaggatgcactgcagcatgcactcaatccctgtctcatcccttgagcctggtggctctgtccctggccagcccgagcttctccagcgctcccttgaggactcattccggagcatttccttctcaaaatcaattgataattcaactgagtttagcagtgctcgattctctgatattgttggggggtcatcccgttatgaagaggagggaaaggagaggcctctggttcttcggaacaaggcaccgagatggcatgagcagttgcagtgttggtgcctaaacttccgggggcgggtgactgttgcctccgttaaaaattttcagttgatagctgctacgacacaatctgccgctggtgcaccaacgccttcacagcctccacagccagccccatcagaccatgacaagatcatactacagtttggtaaagttggcaaggatatgtttactatggattaccggtatcctttgtctgcatttcaggcctttgccatctgcctgagtagctttgacaccaaattagcatgtgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

48.17

Weight (kDa)

9.71

Isoelectric Point (pI)

65.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 3 cut(s) 584, 997, 1029
AccIII TCCGGA 1 cut(s) 864
AciI CCGC 3 cut(s) 154, 1048, 1107
AclWI GGATC 2 cut(s) 361, 564
AcoI YGGCCR 3 cut(s) 82, 646, 823
AcsI RAATTY 3 cut(s) 308, 458, 1072
AcuI CTGAAG 1 cut(s) 362
AfaI GTAC 1 cut(s) 220
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 91, 1048
AgeI ACCGGT 1 cut(s) 1215
AgsI TTSAA 2 cut(s) 449, 900
AjnI CCWGG 5 cut(s) 79, 349, 643, 805, 820
AluBI AGCT 6 cut(s) 121, 634, 702, 835, 1088, 1263
AluI AGCT 6 cut(s) 121, 634, 702, 835, 1088, 1263
Alw21I GWGCWC 3 cut(s) 741, 919, 1117
Alw26I GTCTC 3 cut(s) 67, 340, 796
Alw44I GTGCAC 1 cut(s) 1113
AlwI GGATC 2 cut(s) 361, 564
Ama87I CYCGRG 2 cut(s) 357, 830
Aor13HI TCCGGA 1 cut(s) 864
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 7 cut(s) 82, 224, 646, 752, 823, 974, 1239
ApaLI GTGCAC 1 cut(s) 1113
ApeKI GCWGC 5 cut(s) 121, 346, 699, 771, 1088
ApoI RAATTY 3 cut(s) 308, 458, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsiGI ACCGGT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 846
AspS9I GGNCC 1 cut(s) 752
AsuC2I CCSGG 1 cut(s) 1043
AsuHPI GGTGA 3 cut(s) 82, 122, 1063
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 357, 830
AxyI CCTNAGG 1 cut(s) 684
BaeGI GKGCMC 2 cut(s) 587, 1117
BalI TGGCCA 2 cut(s) 84, 825
BanI GGYRCC 3 cut(s) 584, 997, 1029
Bbv12I GWGCWC 3 cut(s) 741, 919, 1117
BbvI GCAGC 5 cut(s) 108, 358, 711, 783, 1075
BccI CCATC 7 cut(s) 29, 93, 356, 511, 999, 1156, 1256
BciT130I CCWGG 5 cut(s) 81, 351, 645, 807, 822
BciVI GTATCC 1 cut(s) 1230
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 1043
BcoDI GTCTC 3 cut(s) 67, 340, 796
BfaI CTAG 4 cut(s) 54, 162, 210, 747
BfmI CTRYAG 2 cut(s) 769, 1172
BfoI RGCGCY 1 cut(s) 847
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 1230
BisI GCNGC 7 cut(s) 122, 154, 347, 700, 772, 1089, 1107
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 7 cut(s) 123, 155, 348, 701, 773, 1090, 1108
Bme1390I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
BmeT110I CYCGRG 2 cut(s) 357, 830
BmgT120I GGNCC 1 cut(s) 752
BmiI GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
BmrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 511, 753
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 474
BpuEI CTTGAG 3 cut(s) 699, 821, 872
BpuMI CCSGG 1 cut(s) 1043
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 820, 1042
BsaWI WCCGGW 2 cut(s) 864, 1215
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 1048
Bse118I RCCGGY 1 cut(s) 1215
Bse1I ACTGG 3 cut(s) 332, 373, 700
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BseDI CCNNGG 2 cut(s) 820, 1042
BseGI GGATG 7 cut(s) 31, 193, 367, 526, 768, 794, 944
BseLI CCNNNNNNNGG 2 cut(s) 91, 1048
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 4 cut(s) 557, 644, 894, 1247
BseNI ACTGG 3 cut(s) 332, 373, 700
BseRI GAGGAG 1 cut(s) 974
BseSI GKGCMC 2 cut(s) 587, 1117
BseXI GCAGC 5 cut(s) 108, 358, 711, 783, 1075
BseYI CCCAGC 2 cut(s) 156, 609
BshFI GGCC 7 cut(s) 84, 226, 648, 754, 825, 976, 1241
BshNI GGYRCC 3 cut(s) 584, 997, 1029
BshTI ACCGGT 1 cut(s) 1215
BsiHKAI GWGCWC 3 cut(s) 741, 919, 1117
BsiHKCI CYCGRG 2 cut(s) 357, 830
BsiSI CCGG 3 cut(s) 865, 1042, 1216
BslFI GGGAC 2 cut(s) 404, 803
BslI CCNNNNNNNGG 2 cut(s) 91, 1048
BsmAI GTCTC 3 cut(s) 67, 340, 796
BsmFI GGGAC 2 cut(s) 404, 803
BsnI GGCC 7 cut(s) 84, 226, 648, 754, 825, 976, 1241
BsoBI CYCGRG 2 cut(s) 357, 830
Bsp1286I GDGCHC 4 cut(s) 587, 741, 919, 1117
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 3 cut(s) 154, 1048, 1107
BspANI GGCC 7 cut(s) 84, 226, 648, 754, 825, 976, 1241
BspCNI CTCAG 4 cut(s) 558, 643, 895, 1248
BspEI TCCGGA 1 cut(s) 864
BspLI GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
BspMAI CTGCAG 1 cut(s) 773
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 361, 564
BspT107I GGYRCC 3 cut(s) 584, 997, 1029
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 1 cut(s) 1215
BsrI ACTGG 3 cut(s) 332, 373, 700
BssAI RCCGGY 1 cut(s) 1215
BssECI CCNNGG 2 cut(s) 820, 1042
BssMI GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
Bst2UI CCWGG 5 cut(s) 81, 351, 645, 807, 822
Bst4CI ACNGT 3 cut(s) 626, 1057, 1176
Bst6I CTCTTC 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 7 cut(s) 163, 228, 232, 236, 776, 827, 1143
BstDEI CTNAG 7 cut(s) 428, 474, 566, 630, 684, 903, 1256
BstF5I GGATG 7 cut(s) 31, 193, 367, 526, 768, 794, 944
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 6 cut(s) 130, 356, 513, 542, 572, 1167
BstMAI GTCTC 3 cut(s) 67, 340, 796
BstMBI GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
BstMWI GCNNNNNNNGC 7 cut(s) 162, 841, 1112, 1129, 1138, 1238, 1260
BstNI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BstNSI RCATGY 3 cut(s) 242, 778, 1284
BstSCI CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1041
BstSFI CTRYAG 2 cut(s) 769, 1172
BstSLI GKGCMC 2 cut(s) 587, 1117
BstV1I GCAGC 5 cut(s) 108, 358, 711, 783, 1075
BstX2I RGATCY 2 cut(s) 353, 569
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 2 cut(s) 353, 569
Bsu36I CCTNAGG 1 cut(s) 684
BsuI GTATCC 1 cut(s) 1230
BsuRI GGCC 7 cut(s) 84, 226, 648, 754, 825, 976, 1241
BtsCI GGATG 7 cut(s) 31, 193, 367, 526, 768, 794, 944
BtsI GCAGTG 3 cut(s) 766, 919, 1028
BtsIMutI CAGTG 4 cut(s) 380, 766, 919, 1028
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 7 cut(s) 163, 228, 232, 236, 776, 827, 1143
CfoI GCGC 1 cut(s) 846
Cfr10I RCCGGY 1 cut(s) 1215
Cfr13I GGNCC 1 cut(s) 752
Csp6I GTAC 1 cut(s) 219
CspAI ACCGGT 1 cut(s) 1215
CviAII CATG 9 cut(s) 104, 116, 125, 239, 270, 775, 1010, 1157, 1281
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 7 cut(s) 428, 474, 566, 630, 684, 903, 1256
DpnI GATC 6 cut(s) 129, 355, 512, 541, 571, 1166
DpnII GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
EaeI YGGCCR 3 cut(s) 82, 646, 823
Eam1104I CTCTTC 1 cut(s) 951
EarI CTCTTC 1 cut(s) 951
Eco147I AGGCCT 2 cut(s) 976, 1241
Eco47III AGCGCT 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 684
Eco88I CYCGRG 2 cut(s) 357, 830
EcoRII CCWGG 5 cut(s) 79, 349, 643, 805, 820
FaeI CATG 9 cut(s) 107, 119, 128, 242, 273, 778, 1013, 1160, 1284
FalI AAGNNNNNCTT 4 cut(s) 478, 510, 535, 567
FaqI GGGAC 2 cut(s) 404, 803
FatI CATG 9 cut(s) 103, 115, 124, 238, 269, 774, 1009, 1156, 1280
FauI CCCGC 1 cut(s) 1041
FauNDI CATATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 7 cut(s) 122, 154, 347, 700, 772, 1089, 1107
FokI GGATG 7 cut(s) 38, 200, 374, 533, 775, 781, 931
Fsp4HI GCNGC 7 cut(s) 122, 154, 347, 700, 772, 1089, 1107
FspBI CTAG 4 cut(s) 54, 162, 210, 747
GlaI GCGC 1 cut(s) 845
GluI GCNGC 7 cut(s) 122, 154, 347, 700, 772, 1089, 1107
GsaI CCCAGC 2 cut(s) 160, 613
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 7 cut(s) 84, 226, 648, 754, 825, 976, 1241
HapII CCGG 3 cut(s) 865, 1042, 1216
HhaI GCGC 1 cut(s) 846
Hin1II CATG 9 cut(s) 107, 119, 128, 242, 273, 778, 1013, 1160, 1284
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HinfI GANTC 2 cut(s) 857, 921
HpaII CCGG 3 cut(s) 865, 1042, 1216
HphI GGTGA 3 cut(s) 82, 122, 1063
Hpy166II GTNNAC 2 cut(s) 1115, 1203
Hpy188I TCNGA 3 cut(s) 928, 990, 1153
Hpy188III TCNNGA 9 cut(s) 23, 54, 145, 185, 305, 359, 514, 537, 865
Hpy8I GTNNAC 2 cut(s) 1115, 1203
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 2 cut(s) 886, 1134
HpyCH4III ACNGT 3 cut(s) 626, 1057, 1176
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 841, 1112, 1129, 1138, 1238, 1260
HpyF3I CTNAG 7 cut(s) 428, 474, 566, 630, 684, 903, 1256
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 9 cut(s) 107, 119, 128, 242, 273, 778, 1013, 1160, 1284
HspAI GCGC 1 cut(s) 844
Kpn2I TCCGGA 1 cut(s) 864
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
LmnI GCTCC 2 cut(s) 851, 867
Lsp1109I GCAGC 5 cut(s) 108, 358, 711, 783, 1075
LweI GCATC 2 cut(s) 511, 753
MaeI CTAG 4 cut(s) 54, 162, 210, 747
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 545, 718, 1051
MalI GATC 6 cut(s) 129, 355, 512, 541, 571, 1166
MboI GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
MboII GAAGA 5 cut(s) 331, 455, 498, 968, 977
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 2 cut(s) 353, 569
MhlI GDGCHC 4 cut(s) 587, 741, 919, 1117
MlsI TGGCCA 2 cut(s) 84, 825
MluCI AATT 9 cut(s) 291, 308, 400, 458, 574, 888, 895, 1072, 1274
MluNI TGGCCA 2 cut(s) 84, 825
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 183
Mox20I TGGCCA 2 cut(s) 84, 825
MroI TCCGGA 1 cut(s) 864
MroXI GAANNNNTTC 1 cut(s) 180
MscI TGGCCA 2 cut(s) 84, 825
MseI TTAA 4 cut(s) 404, 663, 731, 1068
MslI CAYNNNNRTG 1 cut(s) 1003
Msp20I TGGCCA 2 cut(s) 84, 825
MspA1I CMGCKG 2 cut(s) 156, 1109
MspI CCGG 3 cut(s) 865, 1042, 1216
MspR9I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 5 cut(s) 81, 351, 645, 807, 822
MwoI GCNNNNNNNGC 7 cut(s) 162, 841, 1112, 1129, 1138, 1238, 1260
NciI CCSGG 1 cut(s) 1043
NdeI CATATG 1 cut(s) 724
NdeII GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 9 cut(s) 107, 119, 128, 242, 273, 778, 1013, 1160, 1284
NlaIV GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
NmeAIII GCCGAG 1 cut(s) 720
NmuCI GTSAC 2 cut(s) 718, 1051
NspI RCATGY 3 cut(s) 242, 778, 1284
PaeI GCATGC 1 cut(s) 778
PceI AGGCCT 2 cut(s) 976, 1241
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 921
PinAI ACCGGT 1 cut(s) 1215
PkrI GCNGC 7 cut(s) 123, 155, 348, 701, 773, 1090, 1108
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 222
Psp6I CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspFI CCCAGC 2 cut(s) 156, 609
PspGI CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspN4I GGNNCC 5 cut(s) 586, 690, 753, 999, 1031
PspPI GGNCC 1 cut(s) 752
PstI CTGCAG 1 cut(s) 773
PsuI RGATCY 2 cut(s) 353, 569
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 1003
SaqAI TTAA 4 cut(s) 404, 663, 731, 1068
SatI GCNGC 7 cut(s) 122, 154, 347, 700, 772, 1089, 1107
Sau3AI GATC 6 cut(s) 127, 353, 510, 539, 569, 1164
Sau96I GGNCC 1 cut(s) 752
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1043
SduI GDGCHC 4 cut(s) 587, 741, 919, 1117
SfaNI GCATC 2 cut(s) 511, 753
SfcI CTRYAG 2 cut(s) 769, 1172
SmiMI CAYNNNNRTG 1 cut(s) 1003
SmlI CTYRAG 3 cut(s) 714, 800, 851
SmoI CTYRAG 3 cut(s) 714, 800, 851
SphI GCATGC 1 cut(s) 778
Sse9I AATT 9 cut(s) 291, 308, 400, 458, 574, 888, 895, 1072, 1274
SseBI AGGCCT 2 cut(s) 976, 1241
SsiI CCGC 3 cut(s) 154, 1048, 1107
SspMI CTAG 4 cut(s) 54, 162, 210, 747
StuI AGGCCT 2 cut(s) 976, 1241
StyD4I CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1041
TaaI ACNGT 3 cut(s) 626, 1057, 1176
TaiI ACGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 515, 919
TasI AATT 9 cut(s) 291, 308, 400, 458, 574, 888, 895, 1072, 1274
TauI GCSGC 2 cut(s) 156, 1109
TfiI GAWTC 1 cut(s) 921
Tru1I TTAA 4 cut(s) 404, 663, 731, 1068
Tru9I TTAA 4 cut(s) 404, 663, 731, 1068
TscAI CASTG 4 cut(s) 380, 773, 919, 1028
TseFI GTSAC 2 cut(s) 718, 1051
TseI GCWGC 5 cut(s) 121, 346, 699, 771, 1088
Tsp45I GTSAC 2 cut(s) 718, 1051
TspDTI ATGAA 2 cut(s) 583, 969
TspGWI ACGGA 1 cut(s) 1054
TspRI CASTG 4 cut(s) 380, 773, 919, 1028
VneI GTGCAC 1 cut(s) 1113
XapI RAATTY 3 cut(s) 308, 458, 1072
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 3 cut(s) 242, 778, 1284
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 4 cut(s) 54, 162, 210, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.