Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003737

Physical Location & Seq

Genomic Coordinates Reverse (-)

12259553 .. 12259831

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0091800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTACATATTGCTTCTCTTGAAGCCTCTTGGAGAGCATGGGAGGGTGGCCTCCCGACTAGATACCGGTCGACCTCCACCATGGCGAGGTAGCTCGGGTGTCGGTCTACCGGATGCATGTCGTAGGCAGGACCAACCATGTCGCGGGGCCCACCTAAGAGGTCGTTGCTTATGCTTGGCGGTATGTGATATAGGCGGTATGTACAAGTCCCCCAAGTCCCCGAGTAAGAGGCGCTTCTTGGTTGGGGAGTTTAAATATGATGCCGCCAAGTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Tub

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

9.76

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43640 AT1G43640 AT1G76900 AT1G76900 AT1G76900
fragaria_vesca	FvH4_2g13720 FvH4_2g13720 FvH4_2g13720 FvH4_2g13720
malus_domestica	MD05G1025500.v1.1 MD10G1025600.v1.1
prunus_persica	Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1 Prupe.8G029200_v2.0.a1
pyrus_communis	pycom05g01660 pycom10g01690
rosa_chinensis	RchiOBHm_Chr6g0275391
rosa_laevigata	RLG00000013466
rosa_multiflora	Rmu_sc0004143.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193350
rosa_rugosa	Rorug06G0091300 Rorug06G0091300 Rorug06G0091400 Rorug06G0091500 Rorug06G0091600 Rorug06G0091700 Rorug06G0091800
rosa_samantha	Rh6AG205200 Rh6BG208200 Rh6CG210400 Rh6DG200800
rosa_wichuraiana	Rw6G017810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	70, 106
AccII	CGCG	1 cut(s)	144
AciI	CCGC	4 cut(s)	144, 179, 195, 264
AfaI	GTAC	2 cut(s)	5, 203
AfiI	CCNNNNNNNGG	2 cut(s)	86, 143
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Ama87I	CYCGRG	2 cut(s)	94, 220
AoxI	GGCC	2 cut(s)	48, 147
ApaI	GGGCCC	1 cut(s)	151
AsiGI	ACCGGT	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	3 cut(s)	130, 147, 148
AvaI	CYCGRG	2 cut(s)	94, 220
AvaII	GGWCC	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	2 cut(s)	94, 220
BmgT120I	GGNCC	3 cut(s)	130, 147, 148
BmiI	GGNNCC	2 cut(s)	148, 149
BmsI	GCATC	2 cut(s)	103, 250
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	65, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 143
Bse118I	RCCGGY	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	86, 143
BseSI	GKGCMC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	50, 149
BshTI	ACCGGT	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	70
BsiHKCI	CYCGRG	2 cut(s)	94, 220
BsiSI	CCGG	2 cut(s)	66, 110
BslFI	GGGAC	2 cut(s)	193, 202
BslI	CCNNNNNNNGG	2 cut(s)	86, 143
BsmFI	GGGAC	2 cut(s)	193, 202
BsnI	GGCC	2 cut(s)	50, 149
BsoBI	CYCGRG	2 cut(s)	94, 220
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1407I	TGTACA	2 cut(s)	3, 201
Bsp19I	CCATGG	1 cut(s)	80
BspACI	CCGC	4 cut(s)	144, 179, 195, 264
BspANI	GGCC	2 cut(s)	50, 149
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	148, 149
BsrFI	RCCGGY	1 cut(s)	65
BsrGI	TGTACA	2 cut(s)	3, 201
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	80
BstAUI	TGTACA	2 cut(s)	3, 201
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	50, 149
BtgI	CCRYGG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	118
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	130, 147, 148
Csp6I	GTAC	2 cut(s)	4, 202
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	4 cut(s)	38, 81, 117, 138
CviJI	RGCY	4 cut(s)	25, 50, 93, 149
CviKI_1	RGCY	4 cut(s)	25, 50, 93, 149
CviQI	GTAC	2 cut(s)	4, 202
DdeI	CTNAG	1 cut(s)	155
DraI	TTTAAA	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	130
Eco88I	CYCGRG	2 cut(s)	94, 220
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	4 cut(s)	41, 84, 120, 141
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	193, 202
FatI	CATG	4 cut(s)	37, 80, 116, 137
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	2 cut(s)	70, 106
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	235
HaeIII	GGCC	2 cut(s)	50, 149
HapII	CCGG	2 cut(s)	66, 110
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	41, 84, 120, 141
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	66, 110
Hpy166II	GTNNAC	2 cut(s)	71, 107
Hpy188III	TCNNGA	2 cut(s)	19, 54
Hpy8I	GTNNAC	2 cut(s)	71, 107
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	41, 84, 120, 141
HspAI	GCGC	1 cut(s)	232
LpnPI	CCDG	3 cut(s)	79, 113, 123
LweI	GCATC	2 cut(s)	103, 250
MaeI	CTAG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	151
MnlI	CCTC	7 cut(s)	36, 36, 61, 80, 84, 152, 222
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	1 cut(s)	252
MspI	CCGG	2 cut(s)	66, 110
MvnI	CGCG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	80
NlaIII	CATG	4 cut(s)	41, 84, 120, 141
NlaIV	GGNNCC	2 cut(s)	148, 149
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	1 cut(s)	120
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	148, 149
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	3 cut(s)	130, 147, 148
RsaI	GTAC	2 cut(s)	5, 203
RsaNI	GTAC	2 cut(s)	4, 202
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	3 cut(s)	130, 147, 148
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	76, 91, 95, 156, 163
SfaNI	GCATC	2 cut(s)	103, 250
SinI	GGWCC	1 cut(s)	130
SsiI	CCGC	4 cut(s)	144, 179, 195, 264
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	70
TaqII	GACCGA	1 cut(s)	92
TatI	WGTACW	2 cut(s)	3, 201
TauI	GCSGC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	2 cut(s)	70, 106
XspI	CTAG	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.