MD10G1025600.v1.1

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
3193137 .. 3198123
4987 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1025600.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGTCATTCCGCAGTATAGTTCGCGACGTAAGAGATGGGTTTGGAAGTTTATCAAGACGGAGTTTTGAGGTGAGGCTGCCTGGTCATCACAGGGGGAAATCACATGGTTCAGTCCATGAGGTGCATGACCAGCCTTTGGTAATCCAAACTAGCCCTTGGGCTAGCCTACCTCCCGAACTACTGCGCGATGTAATAAAAAGATTGGAGGCTAGTGAGAGTACGTGGCCTTCTCGCAAGCATGTTGTTGCTTGTGCTGCTGTGTGCAGTTCATGGAGGGATATGTGCAAGGAAATCGTCAGAAGTCCTGAATTTTGTGGAAAGATTACCTTCCCAGTCTCCTTGAAGCAGCCAGGATCTCGGGATGGAACCATCCAGTGCTTTATCAAGAGGGACAAGTCTAATTTAACTTACCACCTTTTCCTTTGCCTTAGCCCTGCGTTGCTTGTTGAAAATGGAAAATTTCTTCTTTCTGCAAAGCGGACGCGGAGAACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGATAACATTTCAAGATCAAGCAACAAGTACATTGGGAAATTGAGGTCTAATTTTCTAGGCACCAAATTTATTATTTATGATACCCAACCTCCCTACAACAGTGCTCAGCTTCCCCCACCTGGGCGAAGCCGCCGGTTCTACTCTAAAAAGGTTTCTCCCAAGCTCCCCACCGGCAGCTACAACATCGCACAGGTGTCGTACGAGTTAAATGTGCTTGGCACAAGAGGGCCACGGAGGATGCACTGCACCATGCACTCAATCCCTGCTGCATCCCTTGAGCCTGGTGGCATTGTCCCTGGCCAGCCTGAGATTCTCCAACGCTCCCTTGAGGACTCATTCCGAAGCATTTCCTTCTCAAAATCAATTGTTGATTCAAGTGAGTTTAGCAGTGCCCGATTCTCTGATATAGTTGGGGCCCATTGCGAAGAAGATGGAAAGGAAAGACCATTAGTTCTCCGGAACAAGGCACCAAGGTGGCATGAACAGTTGCAGTGTTGGTGCTTAAACTTCCGGGGAAGGGTGACAGTTGCCTCTGTCAAAAACTTTCAGTTAATAGCGGCTGCACCTTCTGCTGCTGGCGCACCGACACCATCTCAGCCACCACAGCCAACCTCGTCTGACCACGACAAGGTCATACTTCAGTTTGGTAAGGTTGGGAAGGATATGTTTACTATGGATTACCGGTATCCATTGTCTGCGTTTCAGGCTTTTGCGATCTGCTTGAGCAGTTTCGACACCAAATTAGCATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

47.65

Weight (kDa)

9.54

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 96 5.4e-06 F-box-like
Tub PF01167 114 - 421 3.9e-110 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 584, 991
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 3 cut(s) 24, 186, 484
AccIII TCCGGA 1 cut(s) 981
AciI CCGC 5 cut(s) 10, 478, 484, 655, 1082
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 3 cut(s) 308, 458, 590
AcuI CTGAAG 1 cut(s) 1148
AfaI GTAC 3 cut(s) 220, 554, 725
AfiI CCNNNNNNNGG 6 cut(s) 136, 644, 645, 988, 1042, 1153
AgeI ACCGGT 1 cut(s) 1206
AgsI TTSAA 4 cut(s) 343, 449, 537, 900
AjnI CCWGG 5 cut(s) 79, 349, 643, 805, 820
AleI CACNNNNGTG 1 cut(s) 997
AluBI AGCT 3 cut(s) 634, 688, 702
AluI AGCT 3 cut(s) 634, 688, 702
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 981
AoxI GGCC 4 cut(s) 224, 752, 823, 939
ApaI GGGCCC 1 cut(s) 943
ApeKI GCWGC 7 cut(s) 76, 254, 346, 699, 791, 1085, 1097
ApoI RAATTY 3 cut(s) 308, 458, 590
AsiGI ACCGGT 1 cut(s) 1206
Asp700I GAANNNNTTC 1 cut(s) 871
AspLEI GCGC 2 cut(s) 186, 1106
AspS9I GGNCC 3 cut(s) 752, 939, 940
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 2 cut(s) 82, 1057
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 357
BaeGI GKGCMC 2 cut(s) 919, 943
BalI TGGCCA 1 cut(s) 825
BanI GGYRCC 2 cut(s) 584, 991
BanII GRGCYC 1 cut(s) 943
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 7 cut(s) 63, 241, 358, 711, 778, 1072, 1084
BccI CCATC 5 cut(s) 29, 356, 377, 950, 1123
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 702, 736
BciT130I CCWGG 5 cut(s) 81, 351, 645, 807, 822
BciVI GTATCC 1 cut(s) 1221
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 4 cut(s) 150, 162, 210, 581
BfuI GTATCC 1 cut(s) 1221
BisI GCNGC 9 cut(s) 77, 255, 347, 655, 700, 792, 1083, 1086, 1098
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 9 cut(s) 78, 256, 348, 656, 701, 793, 1084, 1087, 1099
Bme1390I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 752, 939, 940
BmiI GGNNCC 5 cut(s) 367, 586, 940, 941, 993
BmrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 511, 753, 803
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 821, 872, 1267
BpuMI CCSGG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 7 cut(s) 155, 516, 644, 755, 820, 995, 1036
BsaWI WCCGGW 2 cut(s) 981, 1206
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 644, 645, 988, 1042, 1153
Bse118I RCCGGY 3 cut(s) 657, 695, 1206
Bse1I ACTGG 2 cut(s) 332, 373
Bse3DI GCAATG 1 cut(s) 943
BseAI TCCGGA 1 cut(s) 981
BseBI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BseDI CCNNGG 7 cut(s) 155, 516, 644, 755, 820, 995, 1036
BseGI GGATG 5 cut(s) 367, 369, 526, 768, 794
BseLI CCNNNNNNNGG 6 cut(s) 136, 644, 645, 988, 1042, 1153
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 3 cut(s) 644, 822, 1133
BseNI ACTGG 2 cut(s) 332, 373
BseSI GKGCMC 2 cut(s) 919, 943
BseXI GCAGC 7 cut(s) 63, 241, 358, 711, 778, 1072, 1084
BsgI GTGCAG 3 cut(s) 283, 754, 1071
Bsh1236I CGCG 3 cut(s) 24, 186, 484
BshFI GGCC 4 cut(s) 226, 754, 825, 941
BshNI GGYRCC 2 cut(s) 584, 991
BshTI ACCGGT 1 cut(s) 1206
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 5 cut(s) 658, 696, 982, 1036, 1207
BsiWI CGTACG 1 cut(s) 723
BslFI GGGAC 2 cut(s) 404, 803
BslI CCNNNNNNNGG 6 cut(s) 136, 644, 645, 988, 1042, 1153
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 404, 803
BsnI GGCC 4 cut(s) 226, 754, 825, 941
BsoBI CYCGRG 1 cut(s) 357
Bsp120I GGGCCC 1 cut(s) 939
Bsp1286I GDGCHC 3 cut(s) 631, 919, 943
Bsp13I TCCGGA 1 cut(s) 981
Bsp143I GATC 4 cut(s) 353, 510, 539, 1239
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 516
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 5 cut(s) 10, 478, 484, 655, 1082
BspANI GGCC 4 cut(s) 226, 754, 825, 941
BspCNI CTCAG 3 cut(s) 643, 823, 1132
BspEI TCCGGA 1 cut(s) 981
BspFNI CGCG 3 cut(s) 24, 186, 484
BspLI GGNNCC 5 cut(s) 367, 586, 940, 941, 993
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 584, 991
BsrDI GCAATG 1 cut(s) 943
BsrFI RCCGGY 3 cut(s) 657, 695, 1206
BsrI ACTGG 2 cut(s) 332, 373
BssAI RCCGGY 3 cut(s) 657, 695, 1206
BssECI CCNNGG 7 cut(s) 155, 516, 644, 755, 820, 995, 1036
BssMI GATC 4 cut(s) 353, 510, 539, 1239
BssT1I CCWWGG 3 cut(s) 155, 516, 995
Bst2UI CCWGG 5 cut(s) 81, 351, 645, 807, 822
Bst4CI ACNGT 3 cut(s) 626, 1011, 1051
BstAPI GCANNNNNTGC 1 cut(s) 1094
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 163, 236, 827, 1102
BstDEI CTNAG 4 cut(s) 428, 630, 831, 1119
BstDSI CCRYGG 2 cut(s) 516, 755
BstF5I GGATG 5 cut(s) 367, 369, 526, 768, 794
BstFNI CGCG 3 cut(s) 24, 186, 484
BstHHI GCGC 2 cut(s) 186, 1106
BstKTI GATC 4 cut(s) 356, 513, 542, 1242
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 4 cut(s) 353, 510, 539, 1239
BstMWI GCNNNNNNNGC 6 cut(s) 130, 254, 1094, 1103, 1129, 1229
BstNI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BstNSI RCATGY 2 cut(s) 242, 1275
BstSCI CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1035
BstSLI GKGCMC 2 cut(s) 919, 943
BstUI CGCG 3 cut(s) 24, 186, 484
BstV1I GCAGC 7 cut(s) 63, 241, 358, 711, 778, 1072, 1084
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 4 cut(s) 226, 754, 825, 941
BtgI CCRYGG 2 cut(s) 516, 755
BtgZI GCGATG 2 cut(s) 201, 694
BtsCI GGATG 5 cut(s) 367, 369, 526, 768, 794
BtsI GCAGTG 3 cut(s) 766, 919, 1022
BtsIMutI CAGTG 5 cut(s) 380, 631, 766, 919, 1022
BtuMI TCGCGA 1 cut(s) 24
Cac8I GCNNGC 4 cut(s) 163, 236, 827, 1102
CfoI GCGC 2 cut(s) 186, 1106
Cfr10I RCCGGY 3 cut(s) 657, 695, 1206
Cfr13I GGNCC 3 cut(s) 752, 939, 940
CseI GACGC 1 cut(s) 490
Csp6I GTAC 3 cut(s) 219, 553, 724
CspAI ACCGGT 1 cut(s) 1206
CviAII CATG 9 cut(s) 104, 116, 125, 239, 270, 517, 775, 1004, 1272
CviQI GTAC 3 cut(s) 219, 553, 724
DdeI CTNAG 4 cut(s) 428, 630, 831, 1119
DpnI GATC 4 cut(s) 355, 512, 541, 1241
DpnII GATC 4 cut(s) 353, 510, 539, 1239
EaeI YGGCCR 1 cut(s) 823
Eco130I CCWWGG 3 cut(s) 155, 516, 995
Eco24I GRGCYC 1 cut(s) 943
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 939
EcoRII CCWGG 5 cut(s) 79, 349, 643, 805, 820
EcoT14I CCWWGG 3 cut(s) 155, 516, 995
EcoT38I GRGCYC 1 cut(s) 943
ErhI CCWWGG 3 cut(s) 155, 516, 995
FaeI CATG 9 cut(s) 107, 119, 128, 242, 273, 520, 778, 1007, 1275
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 404, 803
FatI CATG 9 cut(s) 103, 115, 124, 238, 269, 516, 774, 1003, 1271
Fnu4HI GCNGC 9 cut(s) 77, 255, 347, 655, 700, 792, 1083, 1086, 1098
FokI GGATG 5 cut(s) 356, 374, 533, 775, 781
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 9 cut(s) 77, 255, 347, 655, 700, 792, 1083, 1086, 1098
FspBI CTAG 4 cut(s) 150, 162, 210, 581
GlaI GCGC 2 cut(s) 185, 1105
GluI GCNGC 9 cut(s) 77, 255, 347, 655, 700, 792, 1083, 1086, 1098
HaeIII GGCC 4 cut(s) 226, 754, 825, 941
HapII CCGG 5 cut(s) 658, 696, 982, 1036, 1207
HgaI GACGC 1 cut(s) 490
HhaI GCGC 2 cut(s) 186, 1106
Hin1II CATG 9 cut(s) 107, 119, 128, 242, 273, 520, 778, 1007, 1275
Hin6I GCGC 2 cut(s) 184, 1104
HinP1I GCGC 2 cut(s) 184, 1104
HinfI GANTC 4 cut(s) 835, 857, 896, 921
HpaII CCGG 5 cut(s) 658, 696, 982, 1036, 1207
HphI GGTGA 2 cut(s) 82, 1057
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188I TCNGA 4 cut(s) 299, 866, 928, 1144
Hpy188III TCNNGA 8 cut(s) 23, 54, 173, 305, 359, 385, 537, 982
Hpy8I GTNNAC 1 cut(s) 1194
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 6 cut(s) 237, 337, 886, 1035, 1101, 1177
HpyCH4III ACNGT 3 cut(s) 626, 1011, 1051
HpyCH4IV ACGT 2 cut(s) 27, 221
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 254, 1094, 1103, 1129, 1229
HpyF3I CTNAG 4 cut(s) 428, 630, 831, 1119
HpySE526I ACGT 2 cut(s) 27, 221
Hsp92II CATG 9 cut(s) 107, 119, 128, 242, 273, 520, 778, 1007, 1275
HspAI GCGC 2 cut(s) 184, 1104
Kpn2I TCCGGA 1 cut(s) 981
Kzo9I GATC 4 cut(s) 353, 510, 539, 1239
LmnI GCTCC 2 cut(s) 693, 851
Lsp1109I GCAGC 7 cut(s) 63, 241, 358, 711, 778, 1072, 1084
LweI GCATC 3 cut(s) 511, 753, 803
MaeI CTAG 4 cut(s) 150, 162, 210, 581
MaeII ACGT 2 cut(s) 27, 221
MaeIII GTNAC 1 cut(s) 1045
MalI GATC 4 cut(s) 355, 512, 541, 1241
MboI GATC 4 cut(s) 353, 510, 539, 1239
MboII GAAGA 3 cut(s) 455, 962, 965
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 3 cut(s) 631, 919, 943
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 8 cut(s) 308, 400, 458, 563, 574, 590, 888, 1265
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 865
Mox20I TGGCCA 1 cut(s) 825
MroI TCCGGA 1 cut(s) 981
MroXI GAANNNNTTC 1 cut(s) 871
MscI TGGCCA 1 cut(s) 825
MseI TTAA 4 cut(s) 404, 731, 1028, 1076
MslI CAYNNNNRTG 1 cut(s) 997
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 5 cut(s) 658, 696, 982, 1036, 1207
MspR9I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 5 cut(s) 81, 351, 645, 807, 822
MvnI CGCG 3 cut(s) 24, 186, 484
MwoI GCNNNNNNNGC 6 cut(s) 130, 254, 1094, 1103, 1129, 1229
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 1 cut(s) 516
NdeII GATC 4 cut(s) 353, 510, 539, 1239
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 9 cut(s) 107, 119, 128, 242, 273, 520, 778, 1007, 1275
NlaIV GGNNCC 5 cut(s) 367, 586, 940, 941, 993
NmuCI GTSAC 1 cut(s) 1045
NruI TCGCGA 1 cut(s) 24
NspI RCATGY 2 cut(s) 242, 1275
OliI CACNNNNGTG 1 cut(s) 997
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 3 cut(s) 835, 896, 921
Pfl23II CGTACG 1 cut(s) 723
PflFI GACNNNGTC 1 cut(s) 1154
PflMI CCANNNNNTGG 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 1206
PkrI GCNGC 9 cut(s) 78, 256, 348, 656, 701, 793, 1084, 1087, 1099
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 222
Psp6I CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspGI CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspLI CGTACG 1 cut(s) 723
PspN4I GGNNCC 5 cut(s) 367, 586, 940, 941, 993
PspOMI GGGCCC 1 cut(s) 939
PspPI GGNCC 3 cut(s) 752, 939, 940
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 1154
RruI TCGCGA 1 cut(s) 24
RsaI GTAC 3 cut(s) 220, 554, 725
RsaNI GTAC 3 cut(s) 219, 553, 724
RseI CAYNNNNRTG 1 cut(s) 997
SaqAI TTAA 4 cut(s) 404, 731, 1028, 1076
SatI GCNGC 9 cut(s) 77, 255, 347, 655, 700, 792, 1083, 1086, 1098
Sau3AI GATC 4 cut(s) 353, 510, 539, 1239
Sau96I GGNCC 3 cut(s) 752, 939, 940
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
SduI GDGCHC 3 cut(s) 631, 919, 943
SfaNI GCATC 3 cut(s) 511, 753, 803
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 3 cut(s) 800, 851, 1246
SmoI CTYRAG 3 cut(s) 800, 851, 1246
Sse9I AATT 8 cut(s) 308, 400, 458, 563, 574, 590, 888, 1265
SsiI CCGC 5 cut(s) 10, 478, 484, 655, 1082
SspMI CTAG 4 cut(s) 150, 162, 210, 581
StyD4I CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1035
StyI CCWWGG 3 cut(s) 155, 516, 995
TaaI ACNGT 3 cut(s) 626, 1011, 1051
TaiI ACGT 2 cut(s) 30, 224
TaqI TCGA 1 cut(s) 1257
TasI AATT 8 cut(s) 308, 400, 458, 563, 574, 590, 888, 1265
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 657, 1085
TfiI GAWTC 3 cut(s) 835, 896, 921
Tru1I TTAA 4 cut(s) 404, 731, 1028, 1076
Tru9I TTAA 4 cut(s) 404, 731, 1028, 1076
TscAI CASTG 5 cut(s) 380, 631, 773, 919, 1022
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 7 cut(s) 76, 254, 346, 699, 791, 1085, 1097
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 2 cut(s) 258, 1020
TspGWI ACGGA 2 cut(s) 73, 772
TspRI CASTG 5 cut(s) 380, 631, 773, 919, 1022
Tth111I GACNNNGTC 1 cut(s) 1154
Van91I CCANNNNNTGG 1 cut(s) 136
XapI RAATTY 3 cut(s) 308, 458, 590
XceI RCATGY 2 cut(s) 242, 1275
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 4 cut(s) 150, 162, 210, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.