Prupe.8G029200_v2.0.a1

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
2665881 .. 2672582
6702 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G029200.3

Sequence Viewer

Length: 1281 bp
ATGTCATTTCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGAAGTTTATCCAGACGGAGTTTTGAGGTGAGACTGCCTGGTCATCACAGGGGGAAATCACATGGTTCAGTCCATGAGCTGCACGACCCACCTCTGGTAATCCAGAATAGCCGTTGGGCTAGCCTACCTCCTGAACTACTACGTGATGTAATCAAAAGATTGGAGGCTAGTGAGAGTACTTGGCCTTCTCGCAAGCATGTTGTTGCCTGTGCTGCCGTATGCAGGTCATGGAGGGAAATGTGCAAAGAAATTGTCAGAAGTCCTGAATTCTCTGGGAAGATTACTTTCCCAGTCTCCTTGAAGCAGCCAGGATCTCGGGATGGAACGATCCAGTGCTTTATCAAGAGGGACAAGTCTAATTTAACTTACCACCTTTTCCTTTGCCTTAGCCCTGCCTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCCAAACGAACGCGCAGAACTACTTGCACAGAGTATGTGATCTCAATGGATGCTGATAACATATCAAGATCAAGCAACACCTACATTGGGAAATTGAGGTCTAATTTTCTAGGCACCAAATTCATTATTTATGATACCCAGCCTCCCTACAACAGCGCTCAGCTTTACCCACCTGGCCAAAGCCGTCGGTTTTACTCTAAAAAGGTCTCTCCCAAGGTTCCTACTGGCAGCTACAACATTGCTCAGGTGACATATGAGCTAAATGTACTTGGCACTAGGGGGCCACGCAGGATGCACTGCAACATGCACTCAATCCCTGCCGCATCCCTTGAGCCTGGTGGCATTGTCCCTGGCCAGCCTGAGCTTCTCCAGCGCTCCCTTGAGGACTCATTCCGGAGCATATCCTTCTCAAAATCAATTGATAATTCAACTGAGTTTAGCAGTGCTCGATTCTCTGATATTGTCGGGTCCCATTATGAAGATGAAGGAAAAGAGAGACCATTGATTCTTCGGAACAAGGCACCGAGATGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGTGGAAGGGTAACAGTTGCCTCTGTCAAGAACTTTCAGTTGATAGCAGCTACACAGTCAGTTGCTGGTGCACCGACACCCTCGCAACCACCGCAGCCAACCCAATCTGACCATGACAAGATCATCCTTCAGTTTGGTAAAGTTGGCAAGGATATGTTTACCATGGATTACCGGTATCCTTTGTCTGCATTTCAGGCCTTTGCTATCTGCTTGAGCAGCTTTGACACCAAATTAGCATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.06

Weight (kDa)

9.61

Isoelectric Point (pI)

63.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 255
AccB1I GGYRCC 3 cut(s) 584, 991, 1023
AccII CGCG 1 cut(s) 484
AccIII TCCGGA 1 cut(s) 864
AciI CCGC 2 cut(s) 792, 1127
AclWI GGATC 2 cut(s) 361, 364
AcoI YGGCCR 2 cut(s) 646, 823
AcsI RAATTY 3 cut(s) 308, 458, 590
AcuI CTGAAG 1 cut(s) 1148
AfaI GTAC 2 cut(s) 220, 738
AfeI AGCGCT 2 cut(s) 628, 845
AfiI CCNNNNNNNGG 4 cut(s) 136, 264, 558, 1042
AgeI ACCGGT 1 cut(s) 1206
AgsI TTSAA 3 cut(s) 343, 449, 900
AjnI CCWGG 5 cut(s) 79, 349, 643, 805, 820
AluBI AGCT 7 cut(s) 121, 634, 702, 730, 835, 1085, 1254
AluI AGCT 7 cut(s) 121, 634, 702, 730, 835, 1085, 1254
Alw21I GWGCWC 2 cut(s) 919, 1108
Alw26I GTCTC 4 cut(s) 67, 340, 682, 961
Alw44I GTGCAC 1 cut(s) 1104
AlwI GGATC 2 cut(s) 361, 364
AlwNI CAGNNNCTG 1 cut(s) 1100
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 864
Aor51HI AGCGCT 2 cut(s) 628, 845
AoxI GGCC 5 cut(s) 224, 646, 752, 823, 1230
ApaLI GTGCAC 1 cut(s) 1104
ApeKI GCWGC 7 cut(s) 121, 254, 346, 699, 1082, 1129, 1251
ApoI RAATTY 3 cut(s) 308, 458, 590
ArsI GACNNNNNNTTYG 2 cut(s) 279, 311
AsiGI ACCGGT 1 cut(s) 1206
AspLEI GCGC 3 cut(s) 486, 629, 846
AspS9I GGNCC 2 cut(s) 752, 939
AsuHPI GGTGA 2 cut(s) 82, 730
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 939
BaeGI GKGCMC 1 cut(s) 1108
BalI TGGCCA 2 cut(s) 648, 825
BanI GGYRCC 3 cut(s) 584, 991, 1023
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
Bbv12I GWGCWC 2 cut(s) 919, 1108
BbvI GCAGC 7 cut(s) 108, 241, 358, 711, 1094, 1141, 1263
BccI CCATC 3 cut(s) 29, 356, 993
BceAI ACGGC 3 cut(s) 138, 242, 639
BciT130I CCWGG 5 cut(s) 81, 351, 645, 807, 822
BciVI GTATCC 1 cut(s) 1221
BcoDI GTCTC 4 cut(s) 67, 340, 682, 961
BfaI CTAG 4 cut(s) 162, 210, 581, 747
BfoI RGCGCY 2 cut(s) 630, 847
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 1 cut(s) 1221
BisI GCNGC 8 cut(s) 122, 255, 347, 700, 792, 1083, 1130, 1252
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 8 cut(s) 123, 256, 348, 701, 793, 1084, 1131, 1253
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 5 cut(s) 81, 351, 645, 807, 822
Bme18I GGWCC 1 cut(s) 939
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 2 cut(s) 752, 939
BmiI GGNNCC 7 cut(s) 586, 690, 753, 940, 941, 993, 1025
BmrFI CCNGG 5 cut(s) 81, 351, 645, 807, 822
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 511, 753, 803
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 824
Bpu10I CCTNAGC 3 cut(s) 428, 714, 831
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 821, 872, 1267
BsaAI YACGTR 1 cut(s) 185
BsaI GGTCTC 2 cut(s) 682, 961
BsaJI CCNNGG 4 cut(s) 684, 820, 1036, 1197
BsaWI WCCGGW 2 cut(s) 864, 1206
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 264, 558, 1042
Bse118I RCCGGY 1 cut(s) 1206
Bse1I ACTGG 3 cut(s) 332, 373, 700
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 864
BseBI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BseDI CCNNGG 4 cut(s) 684, 820, 1036, 1197
BseGI GGATG 6 cut(s) 40, 367, 526, 768, 794, 1158
BseLI CCNNNNNNNGG 4 cut(s) 136, 264, 558, 1042
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 4 cut(s) 644, 728, 822, 894
BseNI ACTGG 3 cut(s) 332, 373, 700
BseSI GKGCMC 1 cut(s) 1108
BseXI GCAGC 7 cut(s) 108, 241, 358, 711, 1094, 1141, 1263
BseYI CCCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 5 cut(s) 226, 648, 754, 825, 1232
BshNI GGYRCC 3 cut(s) 584, 991, 1023
BshTI ACCGGT 1 cut(s) 1206
BsiHKAI GWGCWC 2 cut(s) 919, 1108
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 2 cut(s) 865, 1207
BslFI GGGAC 3 cut(s) 404, 803, 925
BslI CCNNNNNNNGG 4 cut(s) 136, 264, 558, 1042
BsmAI GTCTC 4 cut(s) 67, 340, 682, 961
BsmFI GGGAC 3 cut(s) 404, 803, 925
BsnI GGCC 5 cut(s) 226, 648, 754, 825, 1232
Bso31I GGTCTC 2 cut(s) 682, 961
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 919, 1108
Bsp13I TCCGGA 1 cut(s) 864
Bsp143I GATC 5 cut(s) 353, 369, 510, 539, 1155
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 2 cut(s) 792, 1127
BspANI GGCC 5 cut(s) 226, 648, 754, 825, 1232
BspCNI CTCAG 4 cut(s) 643, 727, 823, 895
BspEI TCCGGA 1 cut(s) 864
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 7 cut(s) 586, 690, 753, 940, 941, 993, 1025
BspMI ACCTGC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 361, 364
BspT107I GGYRCC 3 cut(s) 584, 991, 1023
BspTNI GGTCTC 2 cut(s) 682, 961
BsrDI GCAATG 1 cut(s) 708
BsrFI RCCGGY 1 cut(s) 1206
BsrI ACTGG 3 cut(s) 332, 373, 700
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 4 cut(s) 684, 820, 1036, 1197
BssMI GATC 5 cut(s) 353, 369, 510, 539, 1155
BssT1I CCWWGG 2 cut(s) 684, 1197
Bst2UI CCWGG 5 cut(s) 81, 351, 645, 807, 822
Bst4CI ACNGT 3 cut(s) 1011, 1051, 1092
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 163, 236, 827
BstDEI CTNAG 5 cut(s) 428, 630, 714, 831, 903
BstDSI CCRYGG 2 cut(s) 1036, 1197
BstF5I GGATG 6 cut(s) 40, 367, 526, 768, 794, 1158
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 2 cut(s) 630, 847
BstHHI GCGC 3 cut(s) 486, 629, 846
BstKTI GATC 5 cut(s) 356, 372, 513, 542, 1158
BstMAI GTCTC 4 cut(s) 67, 340, 682, 961
BstMBI GATC 5 cut(s) 353, 369, 510, 539, 1155
BstMWI GCNNNNNNNGC 5 cut(s) 254, 841, 1126, 1229, 1251
BstNI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BstNSI RCATGY 3 cut(s) 242, 778, 1275
BstSCI CCNGG 5 cut(s) 79, 349, 643, 805, 820
BstSLI GKGCMC 1 cut(s) 1108
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 7 cut(s) 108, 241, 358, 711, 1094, 1141, 1263
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 5 cut(s) 226, 648, 754, 825, 1232
BtgI CCRYGG 2 cut(s) 1036, 1197
BtsCI GGATG 6 cut(s) 40, 367, 526, 768, 794, 1158
BtsI GCAGTG 3 cut(s) 766, 919, 1022
BtsIMutI CAGTG 4 cut(s) 380, 766, 919, 1022
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 163, 236, 827
CaiI CAGNNNCTG 1 cut(s) 1100
CfoI GCGC 3 cut(s) 486, 629, 846
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 2 cut(s) 752, 939
Csp6I GTAC 2 cut(s) 219, 737
CspAI ACCGGT 1 cut(s) 1206
CviAII CATG 9 cut(s) 104, 116, 239, 270, 775, 1004, 1148, 1198, 1272
CviQI GTAC 2 cut(s) 219, 737
DdeI CTNAG 5 cut(s) 428, 630, 714, 831, 903
DpnI GATC 5 cut(s) 355, 371, 512, 541, 1157
DpnII GATC 5 cut(s) 353, 369, 510, 539, 1155
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 646, 823
Eco130I CCWWGG 2 cut(s) 684, 1197
Eco147I AGGCCT 1 cut(s) 1232
Eco31I GGTCTC 2 cut(s) 682, 961
Eco47I GGWCC 1 cut(s) 939
Eco47III AGCGCT 2 cut(s) 628, 845
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 939
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 5 cut(s) 79, 349, 643, 805, 820
EcoT14I CCWWGG 2 cut(s) 684, 1197
ErhI CCWWGG 2 cut(s) 684, 1197
FaeI CATG 9 cut(s) 107, 119, 242, 273, 778, 1007, 1151, 1201, 1275
FaqI GGGAC 3 cut(s) 404, 803, 925
FatI CATG 9 cut(s) 103, 115, 238, 269, 774, 1003, 1147, 1197, 1271
FauNDI CATATG 1 cut(s) 724
Fnu4HI GCNGC 8 cut(s) 122, 255, 347, 700, 792, 1083, 1130, 1252
FokI GGATG 6 cut(s) 47, 374, 533, 775, 781, 1145
Fsp4HI GCNGC 8 cut(s) 122, 255, 347, 700, 792, 1083, 1130, 1252
FspBI CTAG 4 cut(s) 162, 210, 581, 747
GlaI GCGC 3 cut(s) 485, 628, 845
GluI GCNGC 8 cut(s) 122, 255, 347, 700, 792, 1083, 1130, 1252
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 1 cut(s) 824
HaeII RGCGCY 2 cut(s) 630, 847
HaeIII GGCC 5 cut(s) 226, 648, 754, 825, 1232
HapII CCGG 2 cut(s) 865, 1207
HhaI GCGC 3 cut(s) 486, 629, 846
Hin1II CATG 9 cut(s) 107, 119, 242, 273, 778, 1007, 1151, 1201, 1275
Hin6I GCGC 3 cut(s) 484, 627, 844
HinP1I GCGC 3 cut(s) 484, 627, 844
HinfI GANTC 3 cut(s) 857, 921, 976
HpaII CCGG 2 cut(s) 865, 1207
HphI GGTGA 2 cut(s) 82, 730
Hpy166II GTNNAC 2 cut(s) 1106, 1194
Hpy188I TCNGA 4 cut(s) 299, 928, 984, 1144
Hpy8I GTNNAC 2 cut(s) 1106, 1194
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 5 cut(s) 237, 886, 950, 1035, 1172
HpyCH4III ACNGT 3 cut(s) 1011, 1051, 1092
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 841, 1126, 1229, 1251
HpyF3I CTNAG 5 cut(s) 428, 630, 714, 831, 903
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 9 cut(s) 107, 119, 242, 273, 778, 1007, 1151, 1201, 1275
HspAI GCGC 3 cut(s) 484, 627, 844
KflI GGGWCCC 1 cut(s) 939
Kpn2I TCCGGA 1 cut(s) 864
Kzo9I GATC 5 cut(s) 353, 369, 510, 539, 1155
LmnI GCTCC 2 cut(s) 851, 867
Lsp1109I GCAGC 7 cut(s) 108, 241, 358, 711, 1094, 1141, 1263
LweI GCATC 3 cut(s) 511, 753, 803
MaeI CTAG 4 cut(s) 162, 210, 581, 747
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 718, 1045
MalI GATC 5 cut(s) 355, 371, 512, 541, 1157
MboI GATC 5 cut(s) 353, 369, 510, 539, 1155
MboII GAAGA 4 cut(s) 331, 455, 962, 971
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 2 cut(s) 919, 1108
MlsI TGGCCA 2 cut(s) 648, 825
MluNI TGGCCA 2 cut(s) 648, 825
MlyI GAGTC 1 cut(s) 851
Mox20I TGGCCA 2 cut(s) 648, 825
MroI TCCGGA 1 cut(s) 864
MscI TGGCCA 2 cut(s) 648, 825
MseI TTAA 2 cut(s) 404, 1029
MslI CAYNNNNRTG 1 cut(s) 997
Msp20I TGGCCA 2 cut(s) 648, 825
MspI CCGG 2 cut(s) 865, 1207
MspR9I CCNGG 5 cut(s) 81, 351, 645, 807, 822
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 5 cut(s) 81, 351, 645, 807, 822
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 5 cut(s) 254, 841, 1126, 1229, 1251
NcoI CCATGG 1 cut(s) 1197
NdeI CATATG 1 cut(s) 724
NdeII GATC 5 cut(s) 353, 369, 510, 539, 1155
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 9 cut(s) 107, 119, 242, 273, 778, 1007, 1151, 1201, 1275
NlaIV GGNNCC 7 cut(s) 586, 690, 753, 940, 941, 993, 1025
NmuCI GTSAC 1 cut(s) 718
NspI RCATGY 3 cut(s) 242, 778, 1275
PceI AGGCCT 1 cut(s) 1232
PfeI GAWTC 2 cut(s) 921, 976
PinAI ACCGGT 1 cut(s) 1206
PkrI GCNGC 8 cut(s) 123, 256, 348, 701, 793, 1084, 1131, 1253
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 939
Psp6I CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspN4I GGNNCC 7 cut(s) 586, 690, 753, 940, 941, 993, 1025
PspPI GGNCC 2 cut(s) 752, 939
PspPPI RGGWCCY 1 cut(s) 939
PstNI CAGNNNCTG 1 cut(s) 1100
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 2 cut(s) 220, 738
RsaNI GTAC 2 cut(s) 219, 737
RseI CAYNNNNRTG 1 cut(s) 997
SaqAI TTAA 2 cut(s) 404, 1029
SatI GCNGC 8 cut(s) 122, 255, 347, 700, 792, 1083, 1130, 1252
Sau3AI GATC 5 cut(s) 353, 369, 510, 539, 1155
Sau96I GGNCC 2 cut(s) 752, 939
ScaI AGTACT 1 cut(s) 220
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 5 cut(s) 81, 351, 645, 807, 822
SduI GDGCHC 2 cut(s) 919, 1108
SfaNI GCATC 3 cut(s) 511, 753, 803
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 3 cut(s) 800, 851, 1246
SmoI CTYRAG 3 cut(s) 800, 851, 1246
SseBI AGGCCT 1 cut(s) 1232
SsiI CCGC 2 cut(s) 792, 1127
SspMI CTAG 4 cut(s) 162, 210, 581, 747
StuI AGGCCT 1 cut(s) 1232
StyD4I CCNGG 5 cut(s) 79, 349, 643, 805, 820
StyI CCWWGG 2 cut(s) 684, 1197
TaaI ACNGT 3 cut(s) 1011, 1051, 1092
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 919
TatI WGTACW 2 cut(s) 218, 736
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 2 cut(s) 921, 976
Tru1I TTAA 2 cut(s) 404, 1029
Tru9I TTAA 2 cut(s) 404, 1029
TscAI CASTG 4 cut(s) 380, 773, 919, 1022
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 7 cut(s) 121, 254, 346, 699, 1082, 1129, 1251
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 4 cut(s) 583, 963, 969, 1020
TspGWI ACGGA 2 cut(s) 73, 1025
TspRI CASTG 4 cut(s) 380, 773, 919, 1022
VneI GTGCAC 1 cut(s) 1104
VpaK11BI GGWCC 1 cut(s) 939
XapI RAATTY 3 cut(s) 308, 458, 590
XceI RCATGY 3 cut(s) 242, 778, 1275
XspI CTAG 4 cut(s) 162, 210, 581, 747
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.