Rorug06G0091500

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003737
Physical Location & Seq
Forward (+)
12216381 .. 12217013
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0091500.1

Sequence Viewer

Length: 633 bp
ATGTTTGGAAGGCGCTCTAGCTGTTTTTGCTGCTTCTGTAGCATATACTACATTCTCATCATCTGCTTCTCCTTGTCCTTCCTCATATTCTGGCTCATCTTTCTTCCCCAAGAGCCTAAATTCACAATCACAGATGCCTCTCTGACCCAATTCAATTTTAACAAGACCAACAACACTCTCAACTACAACCTCGCCATCAACATCACAATCAGAAATCCCAACAAAAGGGTGGGCATCTACTACCGCCGCATCCAAGTCATTGCCAACTACCGAAAGAAGAGATTTTGTCTTGTGACTTTGACTTCCTCACCATTTTACCAAGGCCACAAGAACACTACAGATGTGCACGATGTGCACATTGAAGGATCACAGTTGATGAAGTTTGGGAATGCCGACATTTCCCAGTTCAACAAGGAGACTACTGCCAGAGTTTACAGTATTGACTTGCAGCTTGCTCTTCGGATAAAAGCCAGGTTTGGCAAGTTGAAGACACGCAATTACAAGCCTTATCGCAAGATCGATTGCAAACTTAAGGTTCCATTGAGTCTCAATGGAACATATGCAAATGGCTTCAAGGCTAACAAGTGTAGCAACGTTTATTTCTTTCAGAATCCTGATATTGATGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Tub

Protein Analysis

210

Amino Acids

24.57

Weight (kDa)

9.68

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 68 - 160 2.3e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 244, 247
AclI AACGTT 1 cut(s) 594
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 225
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 5 cut(s) 154, 362, 409, 487, 574
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 2 cut(s) 21, 451
AluI AGCT 2 cut(s) 21, 451
Alw21I GWGCWC 2 cut(s) 348, 357
Alw26I GTCTC 2 cut(s) 410, 551
Alw44I GTGCAC 2 cut(s) 344, 353
AlwI GGATC 1 cut(s) 373
AoxI GGCC 1 cut(s) 322
ApaLI GTGCAC 2 cut(s) 344, 353
ApeKI GCWGC 2 cut(s) 30, 448
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 300
BaeGI GKGCMC 2 cut(s) 348, 357
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 2 cut(s) 348, 357
BbvI GCAGC 2 cut(s) 17, 460
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 472
BcoDI GTCTC 2 cut(s) 410, 551
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 37, 336
BfoI RGCGCY 1 cut(s) 16
BfrI CTTAAG 1 cut(s) 530
BisI GCNGC 3 cut(s) 31, 247, 449
BlsI GCNGC 3 cut(s) 32, 248, 450
Bme1390I CCNGG 1 cut(s) 472
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 472
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 124, 243, 258
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 519
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 472
BseCI ATCGAT 1 cut(s) 519
BseDI CCNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 2 cut(s) 348, 357
BseXI GCAGC 2 cut(s) 17, 460
BshFI GGCC 1 cut(s) 324
BshVI ATCGAT 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 348, 357
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 410, 551
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 324
Bsp1286I GDGCHC 2 cut(s) 348, 357
Bsp143I GATC 2 cut(s) 365, 516
BspACI CCGC 2 cut(s) 244, 247
BspANI GGCC 1 cut(s) 324
BspDI ATCGAT 1 cut(s) 519
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 2 cut(s) 365, 516
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 372, 437
Bst6I CTCTTC 2 cut(s) 272, 462
BstAFI CTTAAG 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 453
BstF5I GGATG 1 cut(s) 249
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 2 cut(s) 368, 519
BstMAI GTCTC 2 cut(s) 410, 551
BstMBI GATC 2 cut(s) 365, 516
BstMWI GCNNNNNNNGC 3 cut(s) 27, 39, 352
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 470
BstSFI CTRYAG 2 cut(s) 37, 336
BstSLI GKGCMC 2 cut(s) 348, 357
BstV1I GCAGC 2 cut(s) 17, 460
BstV2I GAAGAC 1 cut(s) 494
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 1 cut(s) 324
BsuTUI ATCGAT 1 cut(s) 519
BtsCI GGATG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 453
CfoI GCGC 1 cut(s) 15
ClaI ATCGAT 1 cut(s) 519
CviJI RGCY 9 cut(s) 21, 94, 115, 324, 451, 470, 505, 570, 578
CviKI_1 RGCY 9 cut(s) 21, 94, 115, 324, 451, 470, 505, 570, 578
DpnI GATC 2 cut(s) 367, 518
DpnII GATC 2 cut(s) 365, 516
DraIII CACNNNGTG 1 cut(s) 352
Eam1104I CTCTTC 2 cut(s) 272, 462
EarI CTCTTC 2 cut(s) 272, 462
Eco130I CCWWGG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaiI YATR 5 cut(s) 44, 46, 86, 559, 561
FauNDI CATATG 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 31, 247, 449
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 31, 247, 449
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 31, 247, 449
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 1 cut(s) 324
HhaI GCGC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 544, 610
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 3 cut(s) 346, 355, 433
Hpy188I TCNGA 4 cut(s) 144, 212, 462, 609
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 3 cut(s) 346, 355, 433
HpyAV CCTTC 3 cut(s) 3, 88, 356
HpyCH4III ACNGT 2 cut(s) 372, 437
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 5 cut(s) 346, 355, 448, 525, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 39, 352
HpySE526I ACGT 1 cut(s) 594
HspAI GCGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 365, 516
LguI GCTCTTC 1 cut(s) 462
LpnPI CCDG 6 cut(s) 76, 416, 439, 457, 484, 627
Lsp1109I GCAGC 2 cut(s) 17, 460
LweI GCATC 3 cut(s) 124, 243, 258
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 367, 518
MboI GATC 2 cut(s) 365, 516
MboII GAAGA 4 cut(s) 95, 289, 449, 499
MhlI GDGCHC 2 cut(s) 348, 357
MluCI AATT 4 cut(s) 119, 149, 154, 496
MlyI GAGTC 1 cut(s) 553
MnlI CCTC 4 cut(s) 92, 148, 200, 316
MseI TTAA 3 cut(s) 159, 531, 631
MspCI CTTAAG 1 cut(s) 530
MspR9I CCNGG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 3 cut(s) 27, 39, 352
NdeI CATATG 1 cut(s) 559
NdeII GATC 2 cut(s) 365, 516
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 610
PkrI GCNGC 3 cut(s) 32, 248, 450
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 1 cut(s) 537
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 159, 531, 631
SatI GCNGC 3 cut(s) 31, 247, 449
Sau3AI GATC 2 cut(s) 365, 516
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 2 cut(s) 348, 357
SetI ASST 6 cut(s) 23, 192, 453, 476, 537, 597
SfaNI GCATC 3 cut(s) 124, 243, 258
SfcI CTRYAG 2 cut(s) 37, 336
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 4 cut(s) 119, 149, 154, 496
SsiI CCGC 2 cut(s) 244, 247
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 2 cut(s) 372, 437
TaiI ACGT 1 cut(s) 597
TaqI TCGA 1 cut(s) 519
TasI AATT 4 cut(s) 119, 149, 154, 496
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 610
Tru1I TTAA 3 cut(s) 159, 531, 631
Tru9I TTAA 3 cut(s) 159, 531, 631
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 2 cut(s) 30, 448
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 530
VneI GTGCAC 2 cut(s) 344, 353
XapI RAATTY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.