MD05G1025500.v1.1

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
4136564 .. 4141497
4934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1025500.v1.1.491

Sequence Viewer

Length: 1281 bp
ATGTCATTCCGCAGTATAGTGCGCGATGTAAGGGATGGGTTTGGAAGTTTATCAAGACGAAGTTTTGAGGTGAGGCTGCCTGGTCATCACAGGGGGAAATCTCATGGTTCAGTCCATGAGGTGCATGACCAGCCTTCGGTAATCCAAAATAGCCGTTGGGCTAGCCTACCTCCCGAACTGCTGCGTGATGTAATAAAAAGATTGGAGGCTAGTGAGAGTACGTGGCCTTCTCGCAAGCATGTTGTTGCTTGTGCTGCTGTGTGCAGATCATGGAGGGAAATGTGCAAGGAAATCGTCAGAAGTCCTGAATTTTGTGGGAAGATTACCTTCCCAGTCGCCTTGAAGCAGCCAGGATCTCGGGATGGAACCATCCAGTGCTTTATCAAGAGGGACAAGTCTAATTTAACTTACCACCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAGCGAACGCGGAGAACTACTTGCACAGAGTATGTGATCTCCACGGATGCTGATAATATTTCAAGATCAAGCAACAAGTACATTGGGAAATTGAGGTCTAATTTTCTAGGCACCAAATTTATTATTTATGATACCCAACCTCCCTACAACAGTGCTCAGCTTTCCCCACCTGGGAGAAGCCGTCGGTTCTACTCTAAAAAGGTATCTCCCAAGCTCCCCACTGGCAGCTACAACATCGCACAGGTGTCGTATGAGTTAAATGTGCTTGGCACACGGGGGCCACGAAGGATGCACTGCACCATGCACTCAATCCCTGCAGCATCCCTTGAGCCTGGTGGCATTGTCCCTGGCCAGCCTGAGATTCTCCAACGCTCCCTTGAGGACTCATTCCGAAGCATTTCCTTCTCAAAATCAATTGTTGATTCAAGTGAGTTTAGCAGTGCACGATTCTCTGATATAGTTGGGGCCCATTGCGAAGAAGATGGAAGGGAAAGACCATTAATTCTTCGGAACAAGGCACCAAGGTGGCATGAACAGTTGCAGTGTTGGTGCTTAAACTTCCGGGGAAGGGTGACAGTTGCCTCTGTCAAAAACTTTCAGTTAATAGCGGCCGCACCACCTTCTGCTGGCGCGCCAACACCATCTCAACCACCACAGCCAACCTCGTCTGACCATGACAAGGTCATACTTCAGTTTGGTAAAGTTGGCAAGGATATGTTTACCATGGATTACCGGTATCCGTTGTCTGCGTTTCAGGCTTTTGCGATCTGCTTGAGCAGCTTCGACACCAAATTAGCATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

47.79

Weight (kDa)

9.65

Isoelectric Point (pI)

67.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 96 6.9e-07 F-box-like
Tub PF01167 114 - 421 1.4e-109 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 584, 991
AccII CGCG 3 cut(s) 24, 484, 1106
AciI CCGC 4 cut(s) 10, 484, 1082, 1086
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 2 cut(s) 823, 1083
AcsI RAATTY 3 cut(s) 308, 458, 590
AcuI CTGAAG 1 cut(s) 1148
AfaI GTAC 2 cut(s) 220, 554
AfiI CCNNNNNNNGG 5 cut(s) 136, 645, 1042, 1100, 1153
AgeI ACCGGT 1 cut(s) 1206
AgsI TTSAA 4 cut(s) 343, 449, 537, 900
AjnI CCWGG 5 cut(s) 79, 349, 643, 805, 820
AleI CACNNNNGTG 1 cut(s) 997
AluBI AGCT 4 cut(s) 634, 688, 702, 1254
AluI AGCT 4 cut(s) 634, 688, 702, 1254
Alw21I GWGCWC 2 cut(s) 631, 919
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 5 cut(s) 224, 752, 823, 939, 1083
ApaI GGGCCC 1 cut(s) 943
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 7 cut(s) 76, 181, 254, 346, 699, 791, 1251
ApoI RAATTY 3 cut(s) 308, 458, 590
AscI GGCGCGCC 1 cut(s) 1104
AseI ATTAAT 1 cut(s) 974
AsiGI ACCGGT 1 cut(s) 1206
Asp700I GAANNNNTTC 1 cut(s) 871
AspLEI GCGC 3 cut(s) 24, 1106, 1108
AspS9I GGNCC 3 cut(s) 752, 939, 940
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 2 cut(s) 82, 1057
AsuNHI GCTAGC 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 357
BaeGI GKGCMC 2 cut(s) 919, 943
BalI TGGCCA 1 cut(s) 825
BanI GGYRCC 2 cut(s) 584, 991
BanII GRGCYC 1 cut(s) 943
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
Bbv12I GWGCWC 2 cut(s) 631, 919
BbvI GCAGC 7 cut(s) 63, 168, 241, 358, 711, 803, 1263
BccI CCATC 5 cut(s) 29, 356, 377, 950, 1123
BceAI ACGGC 2 cut(s) 138, 639
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 702, 736
BciT130I CCWGG 5 cut(s) 81, 351, 645, 807, 822
BciVI GTATCC 1 cut(s) 1221
BcnI CCSGG 1 cut(s) 1037
BfaI CTAG 3 cut(s) 162, 210, 581
BfmI CTRYAG 1 cut(s) 789
BfuI GTATCC 1 cut(s) 1221
BisI GCNGC 9 cut(s) 77, 182, 255, 347, 700, 792, 1083, 1086, 1252
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 9 cut(s) 78, 183, 256, 348, 701, 793, 1084, 1087, 1253
Bme1390I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 752, 939, 940
BmiI GGNNCC 6 cut(s) 367, 586, 753, 940, 941, 993
BmrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 511, 753, 803
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 3 cut(s) 821, 872, 1267
BpuMI CCSGG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 6 cut(s) 516, 644, 820, 995, 1036, 1197
BsaWI WCCGGW 1 cut(s) 1206
BsaXI ACNNNNNCTCC 4 cut(s) 598, 628, 640, 670
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 645, 1042, 1100, 1153
Bse118I RCCGGY 1 cut(s) 1206
Bse1I ACTGG 3 cut(s) 332, 373, 700
Bse3DI GCAATG 1 cut(s) 943
BseBI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BseDI CCNNGG 6 cut(s) 516, 644, 820, 995, 1036, 1197
BseGI GGATG 6 cut(s) 40, 367, 369, 526, 768, 794
BseLI CCNNNNNNNGG 5 cut(s) 136, 645, 1042, 1100, 1153
BseMI GCAATG 1 cut(s) 943
BseMII CTCAG 2 cut(s) 644, 822
BseNI ACTGG 3 cut(s) 332, 373, 700
BsePI GCGCGC 1 cut(s) 1104
BseSI GKGCMC 2 cut(s) 919, 943
BseX3I CGGCCG 1 cut(s) 1083
BseXI GCAGC 7 cut(s) 63, 168, 241, 358, 711, 803, 1263
BsgI GTGCAG 2 cut(s) 283, 754
Bsh1236I CGCG 3 cut(s) 24, 484, 1106
Bsh1285I CGRYCG 1 cut(s) 1086
BshFI GGCC 5 cut(s) 226, 754, 825, 941, 1085
BshNI GGYRCC 2 cut(s) 584, 991
BshTI ACCGGT 1 cut(s) 1206
BsiEI CGRYCG 1 cut(s) 1086
BsiHKAI GWGCWC 2 cut(s) 631, 919
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 2 cut(s) 1036, 1207
BslFI GGGAC 2 cut(s) 404, 803
BslI CCNNNNNNNGG 5 cut(s) 136, 645, 1042, 1100, 1153
BsmFI GGGAC 2 cut(s) 404, 803
BsnI GGCC 5 cut(s) 226, 754, 825, 941, 1085
BsoBI CYCGRG 1 cut(s) 357
Bsp120I GGGCCC 1 cut(s) 939
Bsp1286I GDGCHC 3 cut(s) 631, 919, 943
Bsp143I GATC 5 cut(s) 266, 353, 510, 539, 1239
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 1197
BspACI CCGC 4 cut(s) 10, 484, 1082, 1086
BspANI GGCC 5 cut(s) 226, 754, 825, 941, 1085
BspCNI CTCAG 2 cut(s) 643, 823
BspFNI CGCG 3 cut(s) 24, 484, 1106
BspLI GGNNCC 6 cut(s) 367, 586, 753, 940, 941, 993
BspMAI CTGCAG 1 cut(s) 793
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 361
BspT107I GGYRCC 2 cut(s) 584, 991
BsrDI GCAATG 1 cut(s) 943
BsrFI RCCGGY 1 cut(s) 1206
BsrI ACTGG 3 cut(s) 332, 373, 700
BssAI RCCGGY 1 cut(s) 1206
BssECI CCNNGG 6 cut(s) 516, 644, 820, 995, 1036, 1197
BssHII GCGCGC 1 cut(s) 1104
BssMI GATC 5 cut(s) 266, 353, 510, 539, 1239
BssT1I CCWWGG 2 cut(s) 995, 1197
Bst2UI CCWGG 5 cut(s) 81, 351, 645, 807, 822
Bst4CI ACNGT 3 cut(s) 626, 1011, 1051
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 5 cut(s) 163, 236, 827, 1102, 1106
BstDEI CTNAG 3 cut(s) 428, 630, 831
BstDSI CCRYGG 2 cut(s) 516, 1197
BstF5I GGATG 6 cut(s) 40, 367, 369, 526, 768, 794
BstFNI CGCG 3 cut(s) 24, 484, 1106
BstHHI GCGC 3 cut(s) 24, 1106, 1108
BstKTI GATC 5 cut(s) 269, 356, 513, 542, 1242
BstMBI GATC 5 cut(s) 266, 353, 510, 539, 1239
BstMCI CGRYCG 1 cut(s) 1086
BstMWI GCNNNNNNNGC 4 cut(s) 130, 254, 1229, 1251
BstNI CCWGG 5 cut(s) 81, 351, 645, 807, 822
BstNSI RCATGY 2 cut(s) 242, 1275
BstSCI CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1035
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 2 cut(s) 919, 943
BstUI CGCG 3 cut(s) 24, 484, 1106
BstV1I GCAGC 7 cut(s) 63, 168, 241, 358, 711, 803, 1263
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BstZI CGGCCG 1 cut(s) 1083
BsuI GTATCC 1 cut(s) 1221
BsuRI GGCC 5 cut(s) 226, 754, 825, 941, 1085
BtgI CCRYGG 2 cut(s) 516, 1197
BtgZI GCGATG 2 cut(s) 39, 694
BtsCI GGATG 6 cut(s) 40, 367, 369, 526, 768, 794
BtsI GCAGTG 3 cut(s) 766, 919, 1022
BtsIMutI CAGTG 6 cut(s) 380, 631, 693, 766, 919, 1022
Cac8I GCNNGC 5 cut(s) 163, 236, 827, 1102, 1106
CciNI GCGGCCGC 1 cut(s) 1083
CfoI GCGC 3 cut(s) 24, 1106, 1108
Cfr10I RCCGGY 1 cut(s) 1206
Cfr13I GGNCC 3 cut(s) 752, 939, 940
Csp6I GTAC 2 cut(s) 219, 553
CspAI ACCGGT 1 cut(s) 1206
CviQI GTAC 2 cut(s) 219, 553
DdeI CTNAG 3 cut(s) 428, 630, 831
DpnI GATC 5 cut(s) 268, 355, 512, 541, 1241
DpnII GATC 5 cut(s) 266, 353, 510, 539, 1239
EaeI YGGCCR 2 cut(s) 823, 1083
EagI CGGCCG 1 cut(s) 1083
EclXI CGGCCG 1 cut(s) 1083
Eco130I CCWWGG 2 cut(s) 995, 1197
Eco24I GRGCYC 1 cut(s) 943
Eco52I CGGCCG 1 cut(s) 1083
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 1 cut(s) 357
EcoO109I RGGNCCY 1 cut(s) 939
EcoRII CCWGG 5 cut(s) 79, 349, 643, 805, 820
EcoT14I CCWWGG 2 cut(s) 995, 1197
EcoT38I GRGCYC 1 cut(s) 943
ErhI CCWWGG 2 cut(s) 995, 1197
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 404, 803
Fnu4HI GCNGC 9 cut(s) 77, 182, 255, 347, 700, 792, 1083, 1086, 1252
FokI GGATG 6 cut(s) 47, 356, 374, 533, 775, 781
FriOI GRGCYC 1 cut(s) 943
Fsp4HI GCNGC 9 cut(s) 77, 182, 255, 347, 700, 792, 1083, 1086, 1252
FspBI CTAG 3 cut(s) 162, 210, 581
GlaI GCGC 3 cut(s) 23, 1105, 1107
GluI GCNGC 9 cut(s) 77, 182, 255, 347, 700, 792, 1083, 1086, 1252
HaeIII GGCC 5 cut(s) 226, 754, 825, 941, 1085
HapII CCGG 2 cut(s) 1036, 1207
HhaI GCGC 3 cut(s) 24, 1106, 1108
Hin6I GCGC 3 cut(s) 22, 1104, 1106
HinP1I GCGC 3 cut(s) 22, 1104, 1106
HinfI GANTC 4 cut(s) 835, 857, 896, 921
HpaII CCGG 2 cut(s) 1036, 1207
HphI GGTGA 2 cut(s) 82, 1057
Hpy166II GTNNAC 2 cut(s) 917, 1194
Hpy188I TCNGA 5 cut(s) 299, 866, 928, 984, 1144
Hpy188III TCNNGA 6 cut(s) 54, 173, 305, 359, 385, 537
Hpy8I GTNNAC 2 cut(s) 917, 1194
Hpy99I CGWCG 1 cut(s) 660
HpyAV CCTTC 8 cut(s) 144, 237, 337, 753, 886, 954, 1035, 1104
HpyCH4III ACNGT 3 cut(s) 626, 1011, 1051
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 254, 1229, 1251
HpyF3I CTNAG 3 cut(s) 428, 630, 831
HpySE526I ACGT 1 cut(s) 221
HspAI GCGC 3 cut(s) 22, 1104, 1106
Kzo9I GATC 5 cut(s) 266, 353, 510, 539, 1239
LmnI GCTCC 2 cut(s) 693, 851
Lsp1109I GCAGC 7 cut(s) 63, 168, 241, 358, 711, 803, 1263
LweI GCATC 3 cut(s) 511, 753, 803
MaeI CTAG 3 cut(s) 162, 210, 581
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 1045
MalI GATC 5 cut(s) 268, 355, 512, 541, 1241
MboI GATC 5 cut(s) 266, 353, 510, 539, 1239
MboII GAAGA 5 cut(s) 331, 455, 962, 965, 971
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 3 cut(s) 631, 919, 943
MlsI TGGCCA 1 cut(s) 825
MluCI AATT 9 cut(s) 308, 400, 458, 563, 574, 590, 888, 975, 1265
MluNI TGGCCA 1 cut(s) 825
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 865
Mox20I TGGCCA 1 cut(s) 825
MroXI GAANNNNTTC 1 cut(s) 871
MscI TGGCCA 1 cut(s) 825
MseI TTAA 5 cut(s) 404, 731, 974, 1028, 1076
MslI CAYNNNNRTG 1 cut(s) 997
Msp20I TGGCCA 1 cut(s) 825
MspI CCGG 2 cut(s) 1036, 1207
MspR9I CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 5 cut(s) 81, 351, 645, 807, 822
MvnI CGCG 3 cut(s) 24, 484, 1106
MwoI GCNNNNNNNGC 4 cut(s) 130, 254, 1229, 1251
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 1 cut(s) 1197
NdeII GATC 5 cut(s) 266, 353, 510, 539, 1239
NheI GCTAGC 1 cut(s) 161
NlaIV GGNNCC 6 cut(s) 367, 586, 753, 940, 941, 993
NmuCI GTSAC 1 cut(s) 1045
NotI GCGGCCGC 1 cut(s) 1083
NspI RCATGY 2 cut(s) 242, 1275
OliI CACNNNNGTG 1 cut(s) 997
PalAI GGCGCGCC 1 cut(s) 1104
PauI GCGCGC 1 cut(s) 1104
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 3 cut(s) 835, 896, 921
PflFI GACNNNGTC 1 cut(s) 1154
PinAI ACCGGT 1 cut(s) 1206
PkrI GCNGC 9 cut(s) 78, 183, 256, 348, 701, 793, 1084, 1087, 1253
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Ppu21I YACGTR 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 974
Psp6I CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspGI CCWGG 5 cut(s) 79, 349, 643, 805, 820
PspN4I GGNNCC 6 cut(s) 367, 586, 753, 940, 941, 993
PspOMI GGGCCC 1 cut(s) 939
PspPI GGNCC 3 cut(s) 752, 939, 940
PstI CTGCAG 1 cut(s) 793
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 1154
PteI GCGCGC 1 cut(s) 1104
RsaI GTAC 2 cut(s) 220, 554
RsaNI GTAC 2 cut(s) 219, 553
RseI CAYNNNNRTG 1 cut(s) 997
SaqAI TTAA 5 cut(s) 404, 731, 974, 1028, 1076
SatI GCNGC 9 cut(s) 77, 182, 255, 347, 700, 792, 1083, 1086, 1252
Sau3AI GATC 5 cut(s) 266, 353, 510, 539, 1239
Sau96I GGNCC 3 cut(s) 752, 939, 940
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 6 cut(s) 81, 351, 645, 807, 822, 1037
SduI GDGCHC 3 cut(s) 631, 919, 943
SfaNI GCATC 3 cut(s) 511, 753, 803
SfcI CTRYAG 1 cut(s) 789
SgsI GGCGCGCC 1 cut(s) 1104
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 3 cut(s) 800, 851, 1246
SmoI CTYRAG 3 cut(s) 800, 851, 1246
Sse9I AATT 9 cut(s) 308, 400, 458, 563, 574, 590, 888, 975, 1265
SsiI CCGC 4 cut(s) 10, 484, 1082, 1086
SspI AATATT 1 cut(s) 532
SspMI CTAG 3 cut(s) 162, 210, 581
StyD4I CCNGG 6 cut(s) 79, 349, 643, 805, 820, 1035
StyI CCWWGG 2 cut(s) 995, 1197
TaaI ACNGT 3 cut(s) 626, 1011, 1051
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 1257
TasI AATT 9 cut(s) 308, 400, 458, 563, 574, 590, 888, 975, 1265
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 1085, 1088
TfiI GAWTC 3 cut(s) 835, 896, 921
Tru1I TTAA 5 cut(s) 404, 731, 974, 1028, 1076
Tru9I TTAA 5 cut(s) 404, 731, 974, 1028, 1076
TscAI CASTG 6 cut(s) 380, 631, 700, 773, 919, 1022
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 7 cut(s) 76, 181, 254, 346, 699, 791, 1251
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 1 cut(s) 1020
TspGWI ACGGA 2 cut(s) 533, 1203
TspRI CASTG 6 cut(s) 380, 631, 700, 773, 919, 1022
Tth111I GACNNNGTC 1 cut(s) 1154
VneI GTGCAC 1 cut(s) 915
VspI ATTAAT 1 cut(s) 974
XapI RAATTY 3 cut(s) 308, 458, 590
XceI RCATGY 2 cut(s) 242, 1275
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 3 cut(s) 162, 210, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.