pycom05g01660

Belongs to the TUB family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
2062226 .. 2065591
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g01660.4

Sequence Viewer

Length: 1287 bp
ATGTCATTCCGCAGTATTGTGCGCGATGTAAGGGATGGGTTTGGAAGTTTATCAAGACGAAGTTTTGAGGTGAGGCTGCCTGGTCATCACAGGGGGAAATCTCATGGTTCGGTCCATGAGGTGCATGACCAACCTTTGGTAATCCAAAATAGCCGTTGGGCTAGCCTACCTCCCGAACTGCTGCGTGATGTAATAAAAAGATTGGAGGCTAGTGAGAGCACATGGCCTTCTCGCAAGCATGTTGTTGCTTGTGCTGCTGTGTGCAGATCATGGAGGGAAATGTGCAAGGAAATCGTCAGAAGTCCTGAATTTTGTGGGAAGATTACCTTCCCAGTGGCCTTGAAGCAGCAGTCCAGGATCGATCGGGATGGAACCATCCAGTGCTTTATCAAGAGGGACAAGTCTAATTTAACTTACCACCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAGCGAACGCGGAGAACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGATAATATTTCAAGATCAAGCAACAAGTACATTGGGAAATTGAGGTCTAATTTTCTAGGCACCAAATTTATTATTTATGATACCCAACCTCCCTACAACAGTGCTCAGCTTTCCCCACCTGGGCGAAGCCGTCGATTCTACTCTAAAAAGGTATCTCCCAAGCTCCCCACTGGCAGCTACAACATCGCACAGGTGTCGTATGAGTTAAATGTGCTTGGCACACGGGGGCCACGAAGGATGCACTGCACCATGCACTCAATCCCTGCAGCATCCCTTGAGCCTGGTGGCATTGTCCCTGGCCAGCCTGAGATTCTCCGACGCTCCCTTGAGGACTCATTCCGAAGCATTTCCTTCTCAAAATCAATTGTTGATTCAAGTGAGTTTAGCAGTGCACGATTCTCTGATGCAGTTGGGGCCCATTGCGAAGAAGATGGAAAGGAAAGACCATTAATTCTTCGGAACAAGGCACCAAGGTGGCATGAACAGTTGCAGTGTTGGTGCTTAAACTTCCGGGGAAGGGTGACAGTTGCCTCTGTCAAAAACTTTCAGCTAATAGCGGCCGCACCACCTTCTGCTGGCGCACCAACGCCATCTCAACCACCACAGCCAACCTCGTCTGACCATGACAAGGTCATACTTCAGTTTGGTAAAGTTGGCAAGGATATGTTTACCATGGATTACCGGTATCCGTTGTCTGCGTTTCAGGCTTTTGCGATCTGCTTGAGCAGCTTCGACACCAAATTAGCATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

48.16

Weight (kDa)

9.68

Isoelectric Point (pI)

68.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 590, 997
AccB7I CCANNNNNTGG 1 cut(s) 136
AccII CGCG 2 cut(s) 24, 490
AciI CCGC 4 cut(s) 10, 490, 1088, 1092
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 2 cut(s) 829, 1089
AcsI RAATTY 3 cut(s) 308, 464, 596
AcuI CTGAAG 1 cut(s) 1154
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 5 cut(s) 136, 651, 1048, 1106, 1159
AgeI ACCGGT 1 cut(s) 1212
AgsI TTSAA 4 cut(s) 343, 455, 543, 906
AjnI CCWGG 5 cut(s) 79, 353, 649, 811, 826
AleI CACNNNNGTG 1 cut(s) 1003
AluBI AGCT 5 cut(s) 640, 694, 708, 1081, 1260
AluI AGCT 5 cut(s) 640, 694, 708, 1081, 1260
Alw21I GWGCWC 3 cut(s) 221, 637, 925
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 1 cut(s) 365
AoxI GGCC 6 cut(s) 224, 336, 758, 829, 945, 1089
ApaI GGGCCC 1 cut(s) 949
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 7 cut(s) 76, 181, 254, 346, 705, 797, 1257
ApoI RAATTY 3 cut(s) 308, 464, 596
AseI ATTAAT 1 cut(s) 980
AsiGI ACCGGT 1 cut(s) 1212
Asp700I GAANNNNTTC 1 cut(s) 877
AspLEI GCGC 2 cut(s) 24, 1112
AspS9I GGNCC 4 cut(s) 112, 758, 945, 946
AsuC2I CCSGG 1 cut(s) 1043
AsuHPI GGTGA 2 cut(s) 82, 1063
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 2 cut(s) 925, 949
BalI TGGCCA 1 cut(s) 831
BanI GGYRCC 2 cut(s) 590, 997
BanII GRGCYC 1 cut(s) 949
Bbv12I GWGCWC 3 cut(s) 221, 637, 925
BbvI GCAGC 7 cut(s) 63, 168, 241, 358, 717, 809, 1269
BccI CCATC 5 cut(s) 29, 362, 383, 956, 1129
BceAI ACGGC 2 cut(s) 138, 645
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 708, 742
BciT130I CCWGG 5 cut(s) 81, 355, 651, 813, 828
BciVI GTATCC 1 cut(s) 1227
BcnI CCSGG 1 cut(s) 1043
BfaI CTAG 3 cut(s) 162, 210, 587
BfmI CTRYAG 1 cut(s) 795
BfuI GTATCC 1 cut(s) 1227
BisI GCNGC 9 cut(s) 77, 182, 255, 347, 706, 798, 1089, 1092, 1258
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 9 cut(s) 78, 183, 256, 348, 707, 799, 1090, 1093, 1259
Bme1390I CCNGG 6 cut(s) 81, 355, 651, 813, 828, 1043
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 4 cut(s) 112, 758, 945, 946
BmiI GGNNCC 6 cut(s) 373, 592, 759, 946, 947, 999
BmrFI CCNGG 6 cut(s) 81, 355, 651, 813, 828, 1043
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 4 cut(s) 517, 759, 809, 925
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 326
Bpu10I CCTNAGC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 636
BpuEI CTTGAG 3 cut(s) 827, 878, 1273
BpuMI CCSGG 1 cut(s) 1043
Bsa29I ATCGAT 1 cut(s) 360
BsaJI CCNNGG 6 cut(s) 522, 650, 826, 1001, 1042, 1203
BsaWI WCCGGW 1 cut(s) 1212
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 651, 1048, 1106, 1159
Bse118I RCCGGY 1 cut(s) 1212
Bse1I ACTGG 3 cut(s) 332, 379, 706
Bse3DI GCAATG 1 cut(s) 949
BseBI CCWGG 5 cut(s) 81, 355, 651, 813, 828
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 6 cut(s) 522, 650, 826, 1001, 1042, 1203
BseGI GGATG 6 cut(s) 40, 373, 375, 532, 774, 800
BseLI CCNNNNNNNGG 5 cut(s) 136, 651, 1048, 1106, 1159
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 2 cut(s) 650, 828
BseNI ACTGG 3 cut(s) 332, 379, 706
BseSI GKGCMC 2 cut(s) 925, 949
BseX3I CGGCCG 1 cut(s) 1089
BseXI GCAGC 7 cut(s) 63, 168, 241, 358, 717, 809, 1269
BsgI GTGCAG 2 cut(s) 283, 760
Bsh1236I CGCG 2 cut(s) 24, 490
Bsh1285I CGRYCG 2 cut(s) 364, 1092
BshFI GGCC 6 cut(s) 226, 338, 760, 831, 947, 1091
BshNI GGYRCC 2 cut(s) 590, 997
BshTI ACCGGT 1 cut(s) 1212
BshVI ATCGAT 1 cut(s) 360
BsiEI CGRYCG 2 cut(s) 364, 1092
BsiHKAI GWGCWC 3 cut(s) 221, 637, 925
BsiSI CCGG 2 cut(s) 1042, 1213
BslFI GGGAC 2 cut(s) 410, 809
BslI CCNNNNNNNGG 5 cut(s) 136, 651, 1048, 1106, 1159
BsmFI GGGAC 2 cut(s) 410, 809
BsnI GGCC 6 cut(s) 226, 338, 760, 831, 947, 1091
Bsp120I GGGCCC 1 cut(s) 945
Bsp1286I GDGCHC 4 cut(s) 221, 637, 925, 949
Bsp143I GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
Bsp1720I GCTNAGC 1 cut(s) 636
Bsp19I CCATGG 2 cut(s) 522, 1203
BspACI CCGC 4 cut(s) 10, 490, 1088, 1092
BspANI GGCC 6 cut(s) 226, 338, 760, 831, 947, 1091
BspCNI CTCAG 2 cut(s) 649, 829
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 2 cut(s) 24, 490
BspLI GGNNCC 6 cut(s) 373, 592, 759, 946, 947, 999
BspMAI CTGCAG 1 cut(s) 799
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 365
BspT107I GGYRCC 2 cut(s) 590, 997
BsrDI GCAATG 1 cut(s) 949
BsrFI RCCGGY 1 cut(s) 1212
BsrI ACTGG 3 cut(s) 332, 379, 706
BssAI RCCGGY 1 cut(s) 1212
BssECI CCNNGG 6 cut(s) 522, 650, 826, 1001, 1042, 1203
BssMI GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
BssT1I CCWWGG 3 cut(s) 522, 1001, 1203
Bst2UI CCWGG 5 cut(s) 81, 355, 651, 813, 828
Bst4CI ACNGT 3 cut(s) 632, 1017, 1057
BstC8I GCNNGC 4 cut(s) 163, 236, 833, 1108
BstDEI CTNAG 3 cut(s) 434, 636, 837
BstDSI CCRYGG 2 cut(s) 522, 1203
BstF5I GGATG 6 cut(s) 40, 373, 375, 532, 774, 800
BstFNI CGCG 2 cut(s) 24, 490
BstHHI GCGC 2 cut(s) 24, 1112
BstKTI GATC 6 cut(s) 269, 360, 364, 519, 548, 1248
BstMBI GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
BstMCI CGRYCG 2 cut(s) 364, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 254, 944, 1235, 1257
BstNI CCWGG 5 cut(s) 81, 355, 651, 813, 828
BstNSI RCATGY 2 cut(s) 242, 1281
BstSCI CCNGG 6 cut(s) 79, 353, 649, 811, 826, 1041
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 2 cut(s) 925, 949
BstUI CGCG 2 cut(s) 24, 490
BstV1I GCAGC 7 cut(s) 63, 168, 241, 358, 717, 809, 1269
BstZI CGGCCG 1 cut(s) 1089
Bsu15I ATCGAT 1 cut(s) 360
BsuI GTATCC 1 cut(s) 1227
BsuRI GGCC 6 cut(s) 226, 338, 760, 831, 947, 1091
BsuTUI ATCGAT 1 cut(s) 360
BtgI CCRYGG 2 cut(s) 522, 1203
BtgZI GCGATG 2 cut(s) 39, 700
BtsCI GGATG 6 cut(s) 40, 373, 375, 532, 774, 800
BtsI GCAGTG 3 cut(s) 772, 925, 1028
BtsIMutI CAGTG 7 cut(s) 339, 386, 637, 699, 772, 925, 1028
Cac8I GCNNGC 4 cut(s) 163, 236, 833, 1108
CciNI GCGGCCGC 1 cut(s) 1089
CfoI GCGC 2 cut(s) 24, 1112
Cfr10I RCCGGY 1 cut(s) 1212
Cfr13I GGNCC 4 cut(s) 112, 758, 945, 946
ClaI ATCGAT 1 cut(s) 360
CseI GACGC 1 cut(s) 858
Csp6I GTAC 1 cut(s) 559
CspAI ACCGGT 1 cut(s) 1212
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 3 cut(s) 434, 636, 837
DpnI GATC 6 cut(s) 268, 359, 363, 518, 547, 1247
DpnII GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
EaeI YGGCCR 2 cut(s) 829, 1089
EagI CGGCCG 1 cut(s) 1089
EclXI CGGCCG 1 cut(s) 1089
Eco130I CCWWGG 3 cut(s) 522, 1001, 1203
Eco24I GRGCYC 1 cut(s) 949
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 1089
Eco57I CTGAAG 1 cut(s) 1154
EcoO109I RGGNCCY 1 cut(s) 945
EcoRII CCWGG 5 cut(s) 79, 353, 649, 811, 826
EcoT14I CCWWGG 3 cut(s) 522, 1001, 1203
EcoT38I GRGCYC 1 cut(s) 949
ErhI CCWWGG 3 cut(s) 522, 1001, 1203
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 2 cut(s) 410, 809
Fnu4HI GCNGC 9 cut(s) 77, 182, 255, 347, 706, 798, 1089, 1092, 1258
FokI GGATG 6 cut(s) 47, 362, 380, 539, 781, 787
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 9 cut(s) 77, 182, 255, 347, 706, 798, 1089, 1092, 1258
FspBI CTAG 3 cut(s) 162, 210, 587
GlaI GCGC 2 cut(s) 23, 1111
GluI GCNGC 9 cut(s) 77, 182, 255, 347, 706, 798, 1089, 1092, 1258
HaeIII GGCC 6 cut(s) 226, 338, 760, 831, 947, 1091
HapII CCGG 2 cut(s) 1042, 1213
HgaI GACGC 1 cut(s) 858
HhaI GCGC 2 cut(s) 24, 1112
Hin6I GCGC 2 cut(s) 22, 1110
HinP1I GCGC 2 cut(s) 22, 1110
HinfI GANTC 5 cut(s) 666, 841, 863, 902, 927
HpaII CCGG 2 cut(s) 1042, 1213
HphI GGTGA 2 cut(s) 82, 1063
Hpy166II GTNNAC 2 cut(s) 923, 1200
Hpy188I TCNGA 6 cut(s) 299, 848, 872, 934, 990, 1150
Hpy188III TCNNGA 6 cut(s) 54, 173, 305, 365, 391, 543
Hpy8I GTNNAC 2 cut(s) 923, 1200
Hpy99I CGWCG 2 cut(s) 666, 852
HpyAV CCTTC 6 cut(s) 237, 337, 759, 892, 1041, 1110
HpyCH4III ACNGT 3 cut(s) 632, 1017, 1057
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 944, 1235, 1257
HpyF3I CTNAG 3 cut(s) 434, 636, 837
HspAI GCGC 2 cut(s) 22, 1110
Kzo9I GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
LmnI GCTCC 2 cut(s) 699, 857
Lsp1109I GCAGC 7 cut(s) 63, 168, 241, 358, 717, 809, 1269
LweI GCATC 4 cut(s) 517, 759, 809, 925
MaeI CTAG 3 cut(s) 162, 210, 587
MaeIII GTNAC 1 cut(s) 1051
MalI GATC 6 cut(s) 268, 359, 363, 518, 547, 1247
MboI GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
MboII GAAGA 5 cut(s) 331, 461, 968, 971, 977
MfeI CAATTG 1 cut(s) 894
MhlI GDGCHC 4 cut(s) 221, 637, 925, 949
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 9 cut(s) 308, 406, 464, 569, 580, 596, 894, 981, 1271
MluNI TGGCCA 1 cut(s) 831
MlyI GAGTC 1 cut(s) 857
MmeI TCCRAC 1 cut(s) 871
Mox20I TGGCCA 1 cut(s) 831
MroXI GAANNNNTTC 1 cut(s) 877
MscI TGGCCA 1 cut(s) 831
MseI TTAA 4 cut(s) 410, 737, 980, 1034
MslI CAYNNNNRTG 1 cut(s) 1003
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 2 cut(s) 1042, 1213
MspR9I CCNGG 6 cut(s) 81, 355, 651, 813, 828, 1043
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 5 cut(s) 81, 355, 651, 813, 828
MvnI CGCG 2 cut(s) 24, 490
MwoI GCNNNNNNNGC 4 cut(s) 254, 944, 1235, 1257
NciI CCSGG 1 cut(s) 1043
NcoI CCATGG 2 cut(s) 522, 1203
NdeII GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
NheI GCTAGC 1 cut(s) 161
NlaIV GGNNCC 6 cut(s) 373, 592, 759, 946, 947, 999
NmuCI GTSAC 1 cut(s) 1051
NotI GCGGCCGC 1 cut(s) 1089
NspI RCATGY 2 cut(s) 242, 1281
OliI CACNNNNGTG 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 760
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 666, 841, 902, 927
PflFI GACNNNGTC 1 cut(s) 1160
PflMI CCANNNNNTGG 1 cut(s) 136
PfoI TCCNGGA 1 cut(s) 353
PinAI ACCGGT 1 cut(s) 1212
PkrI GCNGC 9 cut(s) 78, 183, 256, 348, 707, 799, 1090, 1093, 1259
Ple19I CGATCG 1 cut(s) 364
PleI GAGTC 1 cut(s) 857
PpsI GAGTC 1 cut(s) 857
PshBI ATTAAT 1 cut(s) 980
Psp6I CCWGG 5 cut(s) 79, 353, 649, 811, 826
PspGI CCWGG 5 cut(s) 79, 353, 649, 811, 826
PspN4I GGNNCC 6 cut(s) 373, 592, 759, 946, 947, 999
PspOMI GGGCCC 1 cut(s) 945
PspPI GGNCC 4 cut(s) 112, 758, 945, 946
PstI CTGCAG 1 cut(s) 799
PsyI GACNNNGTC 1 cut(s) 1160
PvuI CGATCG 1 cut(s) 364
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
RseI CAYNNNNRTG 1 cut(s) 1003
SaqAI TTAA 4 cut(s) 410, 737, 980, 1034
SatI GCNGC 9 cut(s) 77, 182, 255, 347, 706, 798, 1089, 1092, 1258
Sau3AI GATC 6 cut(s) 266, 357, 361, 516, 545, 1245
Sau96I GGNCC 4 cut(s) 112, 758, 945, 946
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 6 cut(s) 81, 355, 651, 813, 828, 1043
SduI GDGCHC 4 cut(s) 221, 637, 925, 949
SfaNI GCATC 4 cut(s) 517, 759, 809, 925
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 1003
SmlI CTYRAG 3 cut(s) 806, 857, 1252
SmoI CTYRAG 3 cut(s) 806, 857, 1252
Sse9I AATT 9 cut(s) 308, 406, 464, 569, 580, 596, 894, 981, 1271
SsiI CCGC 4 cut(s) 10, 490, 1088, 1092
SspI AATATT 1 cut(s) 538
SspMI CTAG 3 cut(s) 162, 210, 587
StyD4I CCNGG 6 cut(s) 79, 353, 649, 811, 826, 1041
StyI CCWWGG 3 cut(s) 522, 1001, 1203
TaaI ACNGT 3 cut(s) 632, 1017, 1057
TaqI TCGA 3 cut(s) 360, 664, 1263
TaqII GACCGA 1 cut(s) 100
TasI AATT 9 cut(s) 308, 406, 464, 569, 580, 596, 894, 981, 1271
TatI WGTACW 1 cut(s) 558
TauI GCSGC 2 cut(s) 1091, 1094
TfiI GAWTC 4 cut(s) 666, 841, 902, 927
Tru1I TTAA 4 cut(s) 410, 737, 980, 1034
Tru9I TTAA 4 cut(s) 410, 737, 980, 1034
TscAI CASTG 7 cut(s) 339, 386, 637, 706, 779, 925, 1028
TseFI GTSAC 1 cut(s) 1051
TseI GCWGC 7 cut(s) 76, 181, 254, 346, 705, 797, 1257
Tsp45I GTSAC 1 cut(s) 1051
TspDTI ATGAA 1 cut(s) 1026
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 7 cut(s) 339, 386, 637, 706, 779, 925, 1028
Tth111I GACNNNGTC 1 cut(s) 1160
Van91I CCANNNNNTGG 1 cut(s) 136
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 980
XapI RAATTY 3 cut(s) 308, 464, 596
XceI RCATGY 2 cut(s) 242, 1281
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 3 cut(s) 162, 210, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.