AT1G76900

Tubby-like F-box protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
28881539 .. 28885023
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76900.2

Sequence Viewer

Length: 1368 bp
ATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAGATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTTAAGCAGCTTGAACAAAGAAGGTGGTAAATCCCGTGGTTCGGTTCAAGATTCTCATGAGGAACAACTTGTAGTAACGATTCAAGAAACACCGTGGGCGAATCTACCTCCAGAGTTATTACGTGATGTGATCAAAAGACTTGAAGAGAGTGAAAGTGTGTGGCCTGCTCGTAGACATGTTGTTGCTTGTGCTTCTGTTTGCAGGTCATGGAGAGATATGTGTAAAGAGATTGTTCAAAGTCCGGAGCTCTCAGGCAAAATCACATTTCCTGTTTCGTTGAAACAGCCTGGACCAAGAGATGCAACAATGCAATGCTTTATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGCTTTGTTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAACGCATAAGAAGAACTACATACACCGAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAATACCTACATTGGCAAAATCAGGTCTAATTTTCTGGGGACGAAGTTTATAATATACGATACACAACCAGCATACAACAGCAACATCGCTCGAGCGGTCCAACCGGTAGGTCTTAGCCGCAGATTCTACTCAAAGAGAGTCTCTCCCAAAGTACCTAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTAAACGTTCTTGGTACCCGTGGTCCGAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCCTCTTCCCTTGCGGAAGGCGGAACTGTGCCTGGACAGCCCGATATCATTGTCCCGCGCTCTATTCTCGACGAATCGTTCCGCAGCATTACCTCTTCGTCATCGAGAAAAATCACTTACGATTACTCGAATGATTTTAGCAGTGCACGGTTTTCCGACATTCTTGGCCCGTTAAGCGAAGACCAAGAAGTGGTATTAGAAGAAGGGAAAGAGCGGAATTCGCCACCACTTGTGCTTAAGAACAAGCCGCCGAGGTGGCATGAACAGCTTCAGTGTTGGTGTTTAAACTTCAGGGGACGTGTAACAGTCGCATCAGTTAAGAACTTTCAGCTCATTGCAGCAAACCAACCACAGCCTCAGCCTCAGCCTCAACCGCAACCTCAACCCCTAACTCAGCCGCAACCGTCTGGTCAGACCGATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATGGATTTCCGGTATCCGCTCTCTGCGTTTCAGGCTTTCGCTATCTGTTTGAGCAGTTTCGACACAAAACTTGCTTGCGAATAA

Protein Analysis

455

Amino Acids

51.19

Weight (kDa)

9.46

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 57 - 100 3.1e-06 F-box-like
Tub PF01167 118 - 450 1.7e-103 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 608
Acc16I TGCGCA 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 267, 727
Acc65I GGTACC 1 cut(s) 764
AccB1I GGYRCC 1 cut(s) 764
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccBSI CCGCTC 3 cut(s) 653, 1024, 1303
AccI GTMKAC 1 cut(s) 247
AccII CGCG 1 cut(s) 868
AccIII TCCGGA 1 cut(s) 316
AclI AACGTT 1 cut(s) 756
AcsI RAATTY 1 cut(s) 1027
AcuI CTGAAG 2 cut(s) 1064, 1084
AfaI GTAC 3 cut(s) 518, 711, 766
AfiI CCNNNNNNNGG 2 cut(s) 115, 1000
AflII CTTAAG 1 cut(s) 1046
AflIII ACRYGT 3 cut(s) 250, 1108, 1275
AgeI ACCGGT 1 cut(s) 661
AgsI TTSAA 6 cut(s) 88, 122, 158, 218, 311, 355
AhdI GACNNNNNGTC 1 cut(s) 1230
AjiI CACGTC 1 cut(s) 1109
AjnI CCWGG 2 cut(s) 361, 841
AluBI AGCT 6 cut(s) 84, 322, 723, 751, 1078, 1141
AluI AGCT 6 cut(s) 84, 322, 723, 751, 1078, 1141
Alw21I GWGCWC 2 cut(s) 324, 958
Alw26I GTCTC 2 cut(s) 443, 703
Alw44I GTGCAC 1 cut(s) 954
Ama87I CYCGRG 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 2 cut(s) 236, 976
ApaLI GTGCAC 1 cut(s) 954
ApeKI GCWGC 3 cut(s) 81, 894, 1148
ApoI RAATTY 1 cut(s) 1027
AsiGI ACCGGT 1 cut(s) 661
Asp700I GAANNNNTTC 1 cut(s) 1077
Asp718I GGTACC 1 cut(s) 764
AspLEI GCGC 2 cut(s) 736, 870
AspS9I GGNCC 5 cut(s) 365, 655, 773, 977, 1232
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 4 cut(s) 365, 655, 773, 1232
BaeGI GKGCMC 1 cut(s) 958
BanI GGYRCC 1 cut(s) 764
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 996
Bbv12I GWGCWC 2 cut(s) 324, 958
BbvCI CCTCAGC 2 cut(s) 1167, 1173
BbvI GCAGC 3 cut(s) 93, 906, 1160
BccI CCATC 2 cut(s) 1223, 1279
BcgI CGANNNNNNTGC 2 cut(s) 766, 800
BciT130I CCWGG 2 cut(s) 363, 843
BciVI GTATCC 1 cut(s) 1308
BclI TGATCA 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 443, 703
BfaI CTAG 1 cut(s) 714
BfrI CTTAAG 1 cut(s) 1046
BfuAI ACCTGC 2 cut(s) 267, 727
BfuI GTATCC 1 cut(s) 1308
BglI GCCNNNNNGGC 1 cut(s) 1066
BisI GCNGC 6 cut(s) 82, 676, 895, 1058, 1149, 1208
BlsI GCNGC 6 cut(s) 83, 677, 896, 1059, 1150, 1209
Bme1390I CCNGG 2 cut(s) 363, 843
Bme18I GGWCC 4 cut(s) 365, 655, 773, 1232
BmeRI GACNNNNNGTC 1 cut(s) 1230
BmeT110I CYCGRG 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 1109
BmgT120I GGNCC 5 cut(s) 365, 655, 773, 977, 1232
BmiI GGNNCC 2 cut(s) 766, 1234
BmrFI CCNGG 2 cut(s) 363, 843
BmsI GCATC 2 cut(s) 364, 1130
BpiI GAAGAC 1 cut(s) 996
BplI GAGNNNNNCTC 2 cut(s) 685, 717
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 2 cut(s) 1167, 1173
BsaAI YACGTR 2 cut(s) 197, 520
BsaJI CCNNGG 5 cut(s) 109, 167, 769, 776, 1061
BsaWI WCCGGW 3 cut(s) 316, 661, 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 1000
Bse118I RCCGGY 1 cut(s) 661
Bse3DI GCAATG 2 cut(s) 392, 1143
BseAI TCCGGA 1 cut(s) 316
BseBI CCWGG 2 cut(s) 363, 843
BseDI CCNNGG 5 cut(s) 109, 167, 769, 776, 1061
BseLI CCNNNNNNNGG 2 cut(s) 115, 1000
BseMI GCAATG 2 cut(s) 392, 1143
BseMII CTCAG 5 cut(s) 339, 454, 1181, 1187, 1217
BseRI GAGGAG 1 cut(s) 793
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 3 cut(s) 93, 906, 1160
Bsh1236I CGCG 1 cut(s) 868
BshFI GGCC 2 cut(s) 238, 978
BshNI GGYRCC 1 cut(s) 764
BshTI ACCGGT 1 cut(s) 661
BsiHKAI GWGCWC 2 cut(s) 324, 958
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 3 cut(s) 317, 662, 1294
BslFI GGGAC 4 cut(s) 610, 848, 1119, 1218
BslI CCNNNNNNNGG 2 cut(s) 115, 1000
BsmAI GTCTC 2 cut(s) 443, 703
BsmFI GGGAC 4 cut(s) 610, 848, 1119, 1218
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 2 cut(s) 238, 978
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 2 cut(s) 324, 958
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 204, 522, 551, 1242
BspANI GGCC 2 cut(s) 238, 978
BspCNI CTCAG 5 cut(s) 338, 453, 1180, 1186, 1216
BspEI TCCGGA 1 cut(s) 316
BspFNI CGCG 1 cut(s) 868
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 766, 1234
BspMI ACCTGC 2 cut(s) 267, 727
BspT107I GGYRCC 1 cut(s) 764
BspTI CTTAAG 1 cut(s) 1046
BsrBI CCGCTC 3 cut(s) 653, 1024, 1303
BsrDI GCAATG 2 cut(s) 392, 1143
BsrFI RCCGGY 1 cut(s) 661
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 5 cut(s) 109, 167, 769, 776, 1061
BssMI GATC 4 cut(s) 204, 522, 551, 1242
Bst2UI CCWGG 2 cut(s) 363, 843
Bst4CI ACNGT 5 cut(s) 168, 838, 960, 1117, 1215
Bst6I CTCTTC 3 cut(s) 213, 820, 910
BstAFI CTTAAG 1 cut(s) 1046
BstBAI YACGTR 2 cut(s) 197, 520
BstC8I GCNNGC 3 cut(s) 240, 534, 1360
BstDEI CTNAG 6 cut(s) 325, 440, 671, 1167, 1173, 1203
BstDSI CCRYGG 3 cut(s) 109, 167, 769
BstFNI CGCG 1 cut(s) 868
BstHHI GCGC 2 cut(s) 736, 870
BstKTI GATC 4 cut(s) 207, 525, 554, 1245
BstMAI GTCTC 2 cut(s) 443, 703
BstMBI GATC 4 cut(s) 204, 522, 551, 1242
BstMWI GCNNNNNNNGC 7 cut(s) 847, 984, 1030, 1066, 1075, 1183, 1316
BstNI CCWGG 2 cut(s) 363, 843
BstNSI RCATGY 2 cut(s) 254, 1279
BstSCI CCNGG 2 cut(s) 361, 841
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 1 cut(s) 868
BstV1I GCAGC 3 cut(s) 93, 906, 1160
BstV2I GAAGAC 1 cut(s) 996
BsuI GTATCC 1 cut(s) 1308
BsuRI GGCC 2 cut(s) 238, 978
BtgI CCRYGG 3 cut(s) 109, 167, 769
BtgZI GCGATG 2 cut(s) 628, 809
BtrI CACGTC 1 cut(s) 1109
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 2 cut(s) 958, 1088
BveI ACCTGC 2 cut(s) 267, 727
Cac8I GCNNGC 3 cut(s) 240, 534, 1360
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 736, 870
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 5 cut(s) 365, 655, 773, 977, 1232
Csp6I GTAC 3 cut(s) 517, 710, 765
CspAI ACCGGT 1 cut(s) 661
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 5 cut(s) 131, 251, 282, 1070, 1276
CviQI GTAC 3 cut(s) 517, 710, 765
DdeI CTNAG 6 cut(s) 325, 440, 671, 1167, 1173, 1203
DpnI GATC 4 cut(s) 206, 524, 553, 1244
DpnII GATC 4 cut(s) 204, 522, 551, 1242
DraI TTTAAA 1 cut(s) 1095
DriI GACNNNNNGTC 1 cut(s) 1230
Eam1104I CTCTTC 3 cut(s) 213, 820, 910
Eam1105I GACNNNNNGTC 1 cut(s) 1230
EarI CTCTTC 3 cut(s) 213, 820, 910
EciI GGCGGA 1 cut(s) 846
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 856
Eco47I GGWCC 4 cut(s) 365, 655, 773, 1232
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 1064, 1084
Eco88I CYCGRG 1 cut(s) 648
EcoICRI GAGCTC 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 361, 841
EcoRV GATATC 1 cut(s) 856
EcoT22I ATGCAT 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 5 cut(s) 134, 254, 285, 1073, 1279
FaqI GGGAC 4 cut(s) 610, 848, 1119, 1218
FatI CATG 5 cut(s) 130, 250, 281, 1069, 1275
FauI CCCGC 2 cut(s) 817, 873
FbaI TGATCA 1 cut(s) 204
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 6 cut(s) 82, 676, 895, 1058, 1149, 1208
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 6 cut(s) 82, 676, 895, 1058, 1149, 1208
FspBI CTAG 1 cut(s) 714
FspI TGCGCA 1 cut(s) 735
GlaI GCGC 2 cut(s) 735, 869
GluI GCNGC 6 cut(s) 82, 676, 895, 1058, 1149, 1208
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 238, 978
HapII CCGG 3 cut(s) 317, 662, 1294
HhaI GCGC 2 cut(s) 736, 870
Hin1II CATG 5 cut(s) 134, 254, 285, 1073, 1279
Hin6I GCGC 2 cut(s) 734, 868
HinP1I GCGC 2 cut(s) 734, 868
HinfI GANTC 6 cut(s) 125, 154, 175, 681, 696, 884
HpaII CCGG 3 cut(s) 317, 662, 1294
Hpy166II GTNNAC 3 cut(s) 248, 956, 1281
Hpy188I TCNGA 3 cut(s) 777, 967, 1224
Hpy8I GTNNAC 3 cut(s) 248, 956, 1281
Hpy99I CGWCG 1 cut(s) 884
HpyAV CCTTC 3 cut(s) 89, 821, 1007
HpyCH4III ACNGT 5 cut(s) 168, 838, 960, 1117, 1215
HpyCH4IV ACGT 4 cut(s) 196, 519, 756, 1108
HpyCH4V TGCA 9 cut(s) 276, 377, 385, 485, 532, 787, 956, 1148, 1252
HpyF10VI GCNNNNNNNGC 7 cut(s) 847, 984, 1030, 1066, 1075, 1183, 1316
HpyF3I CTNAG 6 cut(s) 325, 440, 671, 1167, 1173, 1203
HpySE526I ACGT 4 cut(s) 196, 519, 756, 1108
Hsp92II CATG 5 cut(s) 134, 254, 285, 1073, 1279
HspAI GCGC 2 cut(s) 734, 868
Kpn2I TCCGGA 1 cut(s) 316
KpnI GGTACC 1 cut(s) 768
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 4 cut(s) 204, 522, 551, 1242
LmnI GCTCC 2 cut(s) 319, 720
Lsp1109I GCAGC 3 cut(s) 93, 906, 1160
LweI GCATC 2 cut(s) 364, 1130
MaeI CTAG 1 cut(s) 714
MaeII ACGT 4 cut(s) 196, 519, 756, 1108
MaeIII GTNAC 2 cut(s) 148, 1111
MalI GATC 4 cut(s) 206, 524, 553, 1244
MbiI CCGCTC 3 cut(s) 653, 1024, 1303
MboI GATC 4 cut(s) 204, 522, 551, 1242
MboII GAAGA 7 cut(s) 230, 467, 510, 807, 897, 1001, 1022
MhlI GDGCHC 2 cut(s) 324, 958
MluCI AATT 4 cut(s) 586, 729, 804, 1027
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 2 cut(s) 682, 990
Mph1103I ATGCAT 1 cut(s) 789
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 6 cut(s) 72, 77, 983, 1047, 1094, 1128
MspCI CTTAAG 1 cut(s) 1046
MspI CCGG 3 cut(s) 317, 662, 1294
MspR9I CCNGG 2 cut(s) 363, 843
MssI GTTTAAAC 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 789
MvaI CCWGG 2 cut(s) 363, 843
MvnI CGCG 1 cut(s) 868
MwoI GCNNNNNNNGC 7 cut(s) 847, 984, 1030, 1066, 1075, 1183, 1316
NdeII GATC 4 cut(s) 204, 522, 551, 1242
NlaIII CATG 5 cut(s) 134, 254, 285, 1073, 1279
NlaIV GGNNCC 2 cut(s) 766, 1234
NmeAIII GCCGAG 1 cut(s) 1086
NsbI TGCGCA 1 cut(s) 735
NsiI ATGCAT 1 cut(s) 789
NspI RCATGY 2 cut(s) 254, 1279
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 1 cut(s) 130
PciI ACATGT 2 cut(s) 250, 1275
PctI GAATGC 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 5 cut(s) 125, 154, 175, 681, 884
PflMI CCANNNNNTGG 1 cut(s) 1000
PinAI ACCGGT 1 cut(s) 661
PkrI GCNGC 6 cut(s) 83, 677, 896, 1059, 1150, 1209
PleI GAGTC 1 cut(s) 704
PmeI GTTTAAAC 1 cut(s) 1095
PpsI GAGTC 1 cut(s) 704
Ppu21I YACGTR 2 cut(s) 197, 520
PscI ACATGT 2 cut(s) 250, 1275
PsiI TTATAA 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 324
Psp1406I AACGTT 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 361, 841
PspGI CCWGG 2 cut(s) 361, 841
PspN4I GGNNCC 2 cut(s) 766, 1234
PspPI GGNCC 5 cut(s) 365, 655, 773, 977, 1232
PspXI VCTCGAGB 1 cut(s) 648
RsaI GTAC 3 cut(s) 518, 711, 766
RsaNI GTAC 3 cut(s) 517, 710, 765
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 6 cut(s) 72, 77, 983, 1047, 1094, 1128
SatI GCNGC 6 cut(s) 82, 676, 895, 1058, 1149, 1208
Sau3AI GATC 4 cut(s) 204, 522, 551, 1242
Sau96I GGNCC 5 cut(s) 365, 655, 773, 977, 1232
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 2 cut(s) 363, 843
SduI GDGCHC 2 cut(s) 324, 958
SfaNI GCATC 2 cut(s) 364, 1130
Sfr274I CTCGAG 1 cut(s) 648
SinI GGWCC 4 cut(s) 365, 655, 773, 1232
SlaI CTCGAG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 648, 1046
SmoI CTYRAG 2 cut(s) 648, 1046
Sse9I AATT 4 cut(s) 586, 729, 804, 1027
SspMI CTAG 1 cut(s) 714
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 361, 841
TaaI ACNGT 5 cut(s) 168, 838, 960, 1117, 1215
TaiI ACGT 4 cut(s) 199, 522, 759, 1111
TaqI TCGA 8 cut(s) 53, 66, 548, 649, 879, 914, 938, 1344
TaqII GACCGA 1 cut(s) 1241
TasI AATT 4 cut(s) 586, 729, 804, 1027
TauI GCSGC 3 cut(s) 678, 1060, 1210
TfiI GAWTC 5 cut(s) 125, 154, 175, 681, 884
Tru1I TTAA 6 cut(s) 72, 77, 983, 1047, 1094, 1128
Tru9I TTAA 6 cut(s) 72, 77, 983, 1047, 1094, 1128
TscAI CASTG 2 cut(s) 958, 1088
TseI GCWGC 3 cut(s) 81, 894, 1148
TspDTI ATGAA 2 cut(s) 812, 1086
TspRI CASTG 2 cut(s) 958, 1088
Van91I CCANNNNNTGG 1 cut(s) 1000
Vha464I CTTAAG 1 cut(s) 1046
VneI GTGCAC 1 cut(s) 954
VpaK11BI GGWCC 4 cut(s) 365, 655, 773, 1232
XapI RAATTY 1 cut(s) 1027
XceI RCATGY 2 cut(s) 254, 1279
XhoI CTCGAG 1 cut(s) 648
XmiI GTMKAC 1 cut(s) 247
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 1 cut(s) 714
Zsp2I ATGCAT 1 cut(s) 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.