Rorug06G0091400

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003737
Physical Location & Seq
Reverse (-)
12195324 .. 12196914
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0091400.1

Sequence Viewer

Length: 546 bp
ATGGCGGACTGTAAGCGAATGGCGGTCGTCGACTCTTCCACCGCCTCCGCAGCCGACGAAGACCACTCTCCGTCCAAGAGAAGGAAAATCCTCACTGCTTCTTCGCCTCCGGAGACAATGCTTCATCATCATCATCATCAGCTCGGCGATTCTCGCAGTTTCAAGCTCCTTCGTTCCACGAGTTCCTGCTCCGACGAGCACTCTCCTCCTTCTTCCTCTTGCTGCTCCAGCAACGAGTTCAACGACGTCGTTCTAATCAGCTCGCCGCTTCTGGATCTGGAGGCCAAGAGTTGTGAAACCGTCTATACTGCGCCGGCCGGCAATAAATTCAGAGAAACGACGCCGTCGAGCGAGCTGTGCCTGGAGAACTCCGACGAGATGGAGTCGCCGGCGGTTAGCAAAGCGCCTCCGAGTGACGAGATCGAAGAGTTCTTCGCCACGGCCGAGAAGTACGAGCAAAAGCGCTTCGCAGAAAAGTACAACTTTGATATCGTGAAGGAGGCGCCGTTGGAGGGCCGGTACCAGTGGGTTCGTTTGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Tub

Protein Analysis

181

Amino Acids

20.17

Weight (kDa)

5.27

Isoelectric Point (pI)

73.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDI PF02234 136 - 179 4.4e-18 Cyclin-dependent kinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
Acc65I GGTACC 1 cut(s) 519
AccB1I GGYRCC 2 cut(s) 502, 519
AccI GTMKAC 1 cut(s) 30
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 6 cut(s) 5, 23, 42, 48, 266, 392
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 2 cut(s) 315, 441
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 3 cut(s) 246, 341, 503
AfaI GTAC 3 cut(s) 452, 479, 521
AfeI AGCGCT 1 cut(s) 464
AfiI CCNNNNNNNGG 2 cut(s) 81, 512
AgsI TTSAA 3 cut(s) 163, 241, 538
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 4 cut(s) 142, 166, 261, 355
AluI AGCT 4 cut(s) 142, 166, 261, 355
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 282
Aor13HI TCCGGA 1 cut(s) 109
Aor51HI AGCGCT 1 cut(s) 464
AoxI GGCC 4 cut(s) 282, 315, 441, 514
ApeKI GCWGC 2 cut(s) 50, 222
ApoI RAATTY 1 cut(s) 326
Asp718I GGTACC 1 cut(s) 519
AspLEI GCGC 4 cut(s) 313, 406, 465, 505
AspS9I GGNCC 1 cut(s) 514
BanI GGYRCC 2 cut(s) 502, 519
BauI CACGAG 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 62, 209
BccI CCATC 1 cut(s) 373
BceAI ACGGC 3 cut(s) 328, 456, 490
BciT130I CCWGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 107
BfoI RGCGCY 3 cut(s) 407, 466, 506
BisI GCNGC 3 cut(s) 51, 223, 266
BlsI GCNGC 3 cut(s) 52, 224, 267
Bme1390I CCNGG 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 504, 521
BmrFI CCNGG 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 3 cut(s) 211, 299, 383
BsaHI GRCGYC 3 cut(s) 246, 341, 503
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 4 cut(s) 491, 503, 521, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 512
Bse118I RCCGGY 4 cut(s) 313, 317, 388, 516
Bse1I ACTGG 1 cut(s) 523
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 81, 512
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 1 cut(s) 195
BseX3I CGGCCG 2 cut(s) 315, 441
BseXI GCAGC 2 cut(s) 62, 209
Bsh1285I CGRYCG 3 cut(s) 27, 318, 444
BshFI GGCC 4 cut(s) 284, 317, 443, 516
BshNI GGYRCC 2 cut(s) 502, 519
BsiEI CGRYCG 3 cut(s) 27, 318, 444
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 5 cut(s) 110, 314, 318, 389, 517
BslI CCNNNNNNNGG 2 cut(s) 81, 512
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 4 cut(s) 284, 317, 443, 516
Bsp1286I GDGCHC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 274, 420
BspACI CCGC 6 cut(s) 5, 23, 42, 48, 266, 392
BspANI GGCC 4 cut(s) 284, 317, 443, 516
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 504, 521
BspPI GGATC 1 cut(s) 282
BspT107I GGYRCC 2 cut(s) 502, 519
BsrFI RCCGGY 4 cut(s) 313, 317, 388, 516
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 4 cut(s) 313, 317, 388, 516
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 274, 420
BssNI GRCGYC 3 cut(s) 246, 341, 503
BssSI CACGAG 1 cut(s) 178
Bst2BI CACGAG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 2 cut(s) 11, 301
Bst6I CTCTTC 2 cut(s) 40, 420
BstACI GRCGYC 3 cut(s) 246, 341, 503
BstC8I GCNNGC 5 cut(s) 263, 315, 319, 353, 390
BstDSI CCRYGG 1 cut(s) 438
BstH2I RGCGCY 3 cut(s) 407, 466, 506
BstHHI GCGC 4 cut(s) 313, 406, 465, 505
BstKTI GATC 2 cut(s) 277, 423
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 274, 420
BstMCI CGRYCG 3 cut(s) 27, 318, 444
BstMWI GCNNNNNNNGC 4 cut(s) 50, 153, 228, 357
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 62, 209
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BstZI CGGCCG 2 cut(s) 315, 441
BsuRI GGCC 4 cut(s) 284, 317, 443, 516
BtgI CCRYGG 1 cut(s) 438
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 530
Cac8I GCNNGC 5 cut(s) 263, 315, 319, 353, 390
CfoI GCGC 4 cut(s) 313, 406, 465, 505
Cfr10I RCCGGY 4 cut(s) 313, 317, 388, 516
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 1 cut(s) 349
Csp6I GTAC 3 cut(s) 451, 478, 520
CviAII CATG 1 cut(s) 543
CviQI GTAC 3 cut(s) 451, 478, 520
DinI GGCGCC 1 cut(s) 504
DpnI GATC 2 cut(s) 276, 422
DpnII GATC 2 cut(s) 274, 420
EaeI YGGCCR 2 cut(s) 315, 441
EagI CGGCCG 2 cut(s) 315, 441
Eam1104I CTCTTC 2 cut(s) 40, 420
EarI CTCTTC 2 cut(s) 40, 420
EciI GGCGGA 1 cut(s) 20
EclXI CGGCCG 2 cut(s) 315, 441
Eco32I GATATC 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 464
Eco52I CGGCCG 2 cut(s) 315, 441
EcoRII CCWGG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 490
EgeI GGCGCC 1 cut(s) 504
EheI GGCGCC 1 cut(s) 504
FaeI CATG 1 cut(s) 546
FaiI YATR 2 cut(s) 306, 544
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 1 cut(s) 542
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 51, 223, 266
Fsp4HI GCNGC 3 cut(s) 51, 223, 266
GlaI GCGC 4 cut(s) 312, 405, 464, 504
GluI GCNGC 3 cut(s) 51, 223, 266
GsuI CTGGAG 3 cut(s) 211, 299, 383
HaeII RGCGCY 3 cut(s) 407, 466, 506
HaeIII GGCC 4 cut(s) 284, 317, 443, 516
HapII CCGG 5 cut(s) 110, 314, 318, 389, 517
HgaI GACGC 1 cut(s) 349
HhaI GCGC 4 cut(s) 313, 406, 465, 505
Hin1I GRCGYC 3 cut(s) 246, 341, 503
Hin1II CATG 1 cut(s) 546
Hin6I GCGC 4 cut(s) 311, 404, 463, 503
HinP1I GCGC 4 cut(s) 311, 404, 463, 503
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 32, 149, 383
HpaII CCGG 5 cut(s) 110, 314, 318, 389, 517
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 4 cut(s) 193, 332, 373, 411
Hpy188III TCNNGA 4 cut(s) 110, 272, 278, 493
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 8 cut(s) 32, 59, 197, 248, 251, 343, 349, 377
HpyAV CCTTC 4 cut(s) 75, 179, 219, 490
HpyCH4III ACNGT 2 cut(s) 11, 301
HpyCH4IV ACGT 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 153, 228, 357
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 3 cut(s) 246, 341, 503
Hsp92II CATG 1 cut(s) 546
HspAI GCGC 4 cut(s) 311, 404, 463, 503
KasI GGCGCC 1 cut(s) 502
Kpn2I TCCGGA 1 cut(s) 109
KpnI GGTACC 1 cut(s) 523
KroI GCCGGC 3 cut(s) 313, 317, 388
KroNI GCCGGC 3 cut(s) 315, 319, 390
Kzo9I GATC 2 cut(s) 274, 420
LmnI GCTCC 3 cut(s) 171, 194, 230
Lsp1109I GCAGC 2 cut(s) 62, 209
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 413
MalI GATC 2 cut(s) 276, 422
MboI GATC 2 cut(s) 274, 420
MboII GAAGA 6 cut(s) 27, 71, 93, 204, 424, 437
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 326
Mly113I GGCGCC 1 cut(s) 503
MlyI GAGTC 2 cut(s) 26, 392
MmeI TCCRAC 3 cut(s) 216, 396, 489
MnlI CCTC 9 cut(s) 55, 101, 117, 216, 226, 274, 417, 493, 505
MreI CGCCGGCG 1 cut(s) 388
MroI TCCGGA 1 cut(s) 109
MroNI GCCGGC 3 cut(s) 313, 317, 388
MspI CCGG 5 cut(s) 110, 314, 318, 389, 517
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 4 cut(s) 50, 153, 228, 357
NaeI GCCGGC 3 cut(s) 315, 319, 390
NarI GGCGCC 1 cut(s) 503
NdeII GATC 2 cut(s) 274, 420
NgoMIV GCCGGC 3 cut(s) 313, 317, 388
NlaIII CATG 1 cut(s) 546
NlaIV GGNNCC 2 cut(s) 504, 521
NmeAIII GCCGAG 2 cut(s) 123, 469
NmuCI GTSAC 1 cut(s) 413
PcsI WCGNNNNNNNCGW 3 cut(s) 240, 344, 441
PdiI GCCGGC 3 cut(s) 315, 319, 390
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 52, 224, 267
PleI GAGTC 2 cut(s) 26, 391
PluTI GGCGCC 1 cut(s) 506
PpsI GAGTC 2 cut(s) 26, 391
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 504, 521
PspPI GGNCC 1 cut(s) 514
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 343
RsaI GTAC 3 cut(s) 452, 479, 521
RsaNI GTAC 3 cut(s) 451, 478, 520
SalI GTCGAC 1 cut(s) 29
SatI GCNGC 3 cut(s) 51, 223, 266
Sau3AI GATC 2 cut(s) 274, 420
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 26, 392
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 201
SetI ASST 5 cut(s) 144, 168, 249, 263, 357
SfoI GGCGCC 1 cut(s) 504
SgrAI CRCCGGYG 1 cut(s) 388
Sse9I AATT 1 cut(s) 326
SsiI CCGC 6 cut(s) 5, 23, 42, 48, 266, 392
SspDI GGCGCC 1 cut(s) 502
StyD4I CCNGG 1 cut(s) 360
TaaI ACNGT 2 cut(s) 11, 301
TaiI ACGT 1 cut(s) 249
TaqI TCGA 3 cut(s) 30, 347, 423
TasI AATT 1 cut(s) 326
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 2 cut(s) 100, 530
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 50, 222
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 2 cut(s) 100, 530
Tth111I GACNNNGTC 1 cut(s) 343
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 30
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.