Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

17095980 .. 17098041

Gene Structure 2062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G45170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATGAAGGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTAGCGTTGCTTCGCTTACCTTCAACGCCGGCAATGCTAAGCTACGAGCCACCATGACTGATGCTTCCTTCGTCGCCGGTCCTAGCTTTAATGGTCTCTCTCTCGCCGTTGAGAAGCCTGGCTTCTTCATCATCGACTACAACGTCCCTAAAAAGGATGTTAGGTTTCAGTTTATGAACACTATCAGAATTGCAGAGAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACGATTGTTGACGGGAGTTTTGTGATTGATCCAGCAAACAAGTTGTCTGCTAATTACATGGTGGGTACAAAGAATTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCTTGTTATGACGTGGCTAAGAATATGTGGGACTTTGCGATTTCTCATAAACTTTATGGTGGTGATAATCTCAAGGCAACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAACAACTCTAAATCAACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCTGAGGAATTGAAGCCGCCAAAACTGACCGCAGAAACTACATGGAACCTGGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.59

Weight (kDa)

9.22

Isoelectric Point (pI)

11.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	2 cut(s)	36, 377
AciI	CCGC	3 cut(s)	45, 599, 612
AclWI	GGATC	2 cut(s)	311, 559
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	19, 70, 253, 559, 595
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	163, 630
AluBI	AGCT	5 cut(s)	88, 132, 370, 401, 584
AluI	AGCT	5 cut(s)	88, 132, 370, 401, 584
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	311, 559
ArsI	GACNNNNNNTTYG	4 cut(s)	290, 317, 322, 349
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	125
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BbvCI	CCTCAGC	1 cut(s)	585
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	165, 632
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	129, 504, 581
BisI	GCNGC	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	600
Bme1390I	CCNGG	2 cut(s)	165, 632
Bme18I	GGWCC	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	629
BmrFI	CCNGG	2 cut(s)	165, 632
BmsI	GCATC	3 cut(s)	97, 501, 578
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	2 cut(s)	74, 122
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	165, 632
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	75, 123, 286
BslFI	GGGAC	2 cut(s)	176, 455
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	176, 455
Bso31I	GGTCTC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	316, 551
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	45, 599, 612
BspCNI	CTCAG	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	311, 559
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	74, 122
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	2 cut(s)	74, 122
BssMI	GATC	2 cut(s)	316, 551
BssNAI	GTATAC	1 cut(s)	378
Bst1107I	GTATAC	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	165, 632
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	84, 429, 585
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	319, 554
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	316, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	165, 632
BstSCI	CCNGG	2 cut(s)	163, 630
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BstZ17I	GTATAC	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	74, 122
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	4 cut(s)	100, 346, 389, 624
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	3 cut(s)	84, 429, 585
DpnI	GATC	2 cut(s)	318, 553
DpnII	GATC	2 cut(s)	316, 551
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	163, 630
FaeI	CATG	4 cut(s)	103, 349, 392, 627
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	176, 455
FatI	CATG	4 cut(s)	99, 345, 388, 623
FauNDI	CATATG	1 cut(s)	270
FblI	GTMKAC	2 cut(s)	36, 377
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	599
FspBI	CTAG	3 cut(s)	129, 504, 581
GluI	GCNGC	1 cut(s)	599
HapII	CCGG	3 cut(s)	75, 123, 286
Hin1II	CATG	4 cut(s)	103, 349, 392, 627
HincII	GTYRAC	2 cut(s)	37, 298
HindII	GTYRAC	2 cut(s)	37, 298
HinfI	GANTC	2 cut(s)	253, 577
HpaII	CCGG	3 cut(s)	75, 123, 286
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	37, 298, 378
Hpy188I	TCNGA	3 cut(s)	233, 258, 498
Hpy8I	GTNNAC	3 cut(s)	37, 298, 378
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	76, 124
HpyCH4IV	ACGT	2 cut(s)	189, 423
HpyCH4V	TGCA	2 cut(s)	239, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	84, 429, 585
HpySE526I	ACGT	2 cut(s)	189, 423
Hsp92II	CATG	4 cut(s)	103, 349, 392, 627
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	316, 551
LpnPI	CCDG	8 cut(s)	88, 136, 150, 177, 299, 333, 534, 617
LweI	GCATC	3 cut(s)	97, 501, 578
MaeI	CTAG	3 cut(s)	129, 504, 581
MaeII	ACGT	2 cut(s)	189, 423
MalI	GATC	2 cut(s)	318, 553
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	2 cut(s)	316, 551
MboII	GAAGA	1 cut(s)	163
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	4 cut(s)	234, 340, 361, 590
MnlI	CCTC	3 cut(s)	269, 386, 580
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	3 cut(s)	75, 123, 286
MspR9I	CCNGG	2 cut(s)	165, 632
MvaI	CCWGG	2 cut(s)	165, 632
MwoI	GCNNNNNNNGC	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	76
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	2 cut(s)	316, 551
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	4 cut(s)	103, 349, 392, 627
NlaIV	GGNNCC	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	253, 577
PkrI	GCNGC	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	163, 630
PspGI	CCWGG	2 cut(s)	163, 630
PspN4I	GGNNCC	1 cut(s)	629
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
RseI	CAYNNNNRTG	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	2 cut(s)	316, 551
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	165, 632
SfaNI	GCATC	3 cut(s)	97, 501, 578
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	234, 340, 361, 590
SsiI	CCGC	3 cut(s)	45, 599, 612
SspMI	CTAG	3 cut(s)	129, 504, 581
StyD4I	CCNGG	2 cut(s)	163, 630
TaiI	ACGT	2 cut(s)	192, 426
TaqI	TCGA	4 cut(s)	30, 36, 180, 530
TasI	AATT	4 cut(s)	234, 340, 361, 590
TauI	GCSGC	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	253, 577
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TspDTI	ATGAA	6 cut(s)	20, 163, 236, 257, 377, 590
VpaK11BI	GGWCC	1 cut(s)	125
XmiI	GTMKAC	2 cut(s)	36, 377
XspI	CTAG	3 cut(s)	129, 504, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.