Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

7994042 .. 7994269

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1018700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTGTGATATGCTTCTGGGCGGAACCTTGGTGCTCGATTCGGCCAACAAGGTGTCGGTGAATCATGTGCTCGGCTCGAGGAACGGGAAGTTCAAGTACTTTCATTTGCACGGCGGAGCGACAACTTTTGAGCCATCGTATGGTTTGGGCAAGAATTCATGGGATCTCGCGGTGGCCCAGAGGGTTTATGATGATGTTGTTGGGGTTGGAGTGGTCGAGCAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.12

Weight (kDa)

6.23

Isoelectric Point (pI)

21.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	1 cut(s)	170
AciI	CCGC	3 cut(s)	21, 114, 170
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	94
Alw21I	GWGCWC	2 cut(s)	36, 72
AlwI	GGATC	1 cut(s)	171
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	2 cut(s)	42, 174
ApoI	RAATTY	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
Bbv12I	GWGCWC	2 cut(s)	36, 72
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	44, 176
BsiHKAI	GWGCWC	2 cut(s)	36, 72
BsiHKCI	CYCGRG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	140
BsnI	GGCC	2 cut(s)	44, 176
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	36, 72
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	21, 114, 170
BspANI	GGCC	2 cut(s)	44, 176
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstUI	CGCG	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	44, 176
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	2 cut(s)	65, 159
CviJI	RGCY	4 cut(s)	44, 75, 133, 176
CviKI_1	RGCY	4 cut(s)	44, 75, 133, 176
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	42
EciI	GGCGGA	2 cut(s)	36, 129
Eco130I	CCWWGG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	2 cut(s)	68, 162
FaiI	YATR	5 cut(s)	11, 66, 141, 160, 189
FatI	CATG	2 cut(s)	64, 158
HaeIII	GGCC	2 cut(s)	44, 176
Hin1II	CATG	2 cut(s)	68, 162
HinfI	GANTC	2 cut(s)	38, 61
HphI	GGTGA	1 cut(s)	70
HpyCH4V	TGCA	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	68, 162
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	2 cut(s)	2, 191
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	2 cut(s)	36, 72
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	72, 174
MvnI	CGCG	1 cut(s)	170
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	68, 162
NlaIV	GGNNCC	1 cut(s)	25
NmeAIII	GCCGAG	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	38, 61
PflMI	CCANNNNNTGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	36, 72
SetI	ASST	2 cut(s)	29, 54
Sfr274I	CTCGAG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	21, 114, 170
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	3 cut(s)	36, 77, 216
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	38, 61
TspDTI	ATGAA	2 cut(s)	92, 147
Van91I	CCANNNNNTGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.