Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

1971050 .. 1972779

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAGGCATCTCTGAAGGGCAGTTACGACACTGAAAAGAGCGGCGCCGCCGCAAACGTCGCCGTCTTCGCCAGCGATGTCAAGTTCCGAGCTTCACTTACCGACGCCACCTTCGCCGCCGGACCCAGCTTACACGGCCTGGTCCTCGCGGTCGAGAAACCCGGCTTCTTCATCGTCGATTACAACGTCCCCAAAAAAGACTTTAGGTTTCAGTTCATGAGCTCGGTTAGGGTTGCGGGGAAGCCGTTGAATTTGAATTACATTCACATGAGGGGAGACAACCGGACGATTCTTGACGGAACCCTGGTGCTCGATTCGGCCAACAAGGTGTCGGCGAATCACGTGCTCGGCTCGAGGAACGGGAAGTTCAAGTACTCTTATCTGCACGGCGGAGCGACGACGTTTGAGCCGTCTTACGACTTGGCCAAGGAATCGTGGGATTTCGCGGTGTCCCGGAGGTTTTATGATGATGTGTTCAGGGCTTCGTACCAGACCTCGAGCAAGCTGTTGGGGTTGGAGTGGTCGAGGAGTTCTAAAATCAATGGCACTTTTAAGGTTTCAGCGTCTGTCAATTTGGCTGAGGAACGAAAGATGCCAAGGTTAACAGCCGAGAGTACGTGGGATATTGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.38

Weight (kDa)

9.42

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	42
AccII	CGCG	2 cut(s)	149, 446
AciI	CCGC	8 cut(s)	42, 48, 51, 117, 149, 236, 390, 446
AcoI	YGGCCR	2 cut(s)	318, 423
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	35
AcvI	CACGTG	1 cut(s)	343
AcyI	GRCGYC	2 cut(s)	45, 105
AfaI	GTAC	3 cut(s)	374, 488, 616
AgsI	TTSAA	3 cut(s)	250, 256, 370
AjnI	CCWGG	2 cut(s)	138, 303
AluBI	AGCT	4 cut(s)	92, 129, 222, 505
AluI	AGCT	4 cut(s)	92, 129, 222, 505
Alw21I	GWGCWC	3 cut(s)	224, 312, 348
Alw26I	GTCTC	1 cut(s)	270
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	2 cut(s)	352, 496
AoxI	GGCC	3 cut(s)	136, 318, 423
ApoI	RAATTY	1 cut(s)	250
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	122, 142
AsuC2I	CCSGG	2 cut(s)	162, 454
AvaI	CYCGRG	2 cut(s)	352, 496
AvaII	GGWCC	2 cut(s)	122, 142
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	4 cut(s)	8, 40, 356, 388
BbrPI	CACGTG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	3 cut(s)	224, 312, 348
BbvCI	CCTCAGC	1 cut(s)	579
BceAI	ACGGC	5 cut(s)	47, 151, 229, 394, 403
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	140, 305
BcnI	CCSGG	2 cut(s)	162, 454
BcoDI	GTCTC	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	4 cut(s)	43, 48, 51, 117
BlsI	GCNGC	4 cut(s)	44, 49, 52, 118
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	4 cut(s)	140, 162, 305, 454
Bme18I	GGWCC	2 cut(s)	122, 142
BmeT110I	CYCGRG	2 cut(s)	352, 496
BmgT120I	GGNCC	2 cut(s)	122, 142
BmiI	GGNNCC	3 cut(s)	46, 124, 301
BmrFI	CCNGG	4 cut(s)	140, 162, 305, 454
BmsI	GCATC	2 cut(s)	17, 582
BpiI	GAAGAC	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	579
BpuMI	CCSGG	2 cut(s)	162, 454
BsaAI	YACGTR	2 cut(s)	343, 618
BsaHI	GRCGYC	2 cut(s)	45, 105
BsaJI	CCNNGG	3 cut(s)	303, 426, 596
BsaWI	WCCGGW	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	140, 305
BseDI	CCNNGG	3 cut(s)	303, 426, 596
BseMII	CTCAG	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	149, 446
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	138, 320, 425
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	3 cut(s)	224, 312, 348
BsiHKCI	CYCGRG	2 cut(s)	352, 496
BsiSI	CCGG	4 cut(s)	120, 162, 283, 454
BslFI	GGGAC	2 cut(s)	173, 436
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	2 cut(s)	173, 436
BsnI	GGCC	3 cut(s)	138, 320, 425
BsoBI	CYCGRG	2 cut(s)	352, 496
Bsp1286I	GDGCHC	3 cut(s)	224, 312, 348
BspACI	CCGC	8 cut(s)	42, 48, 51, 117, 149, 236, 390, 446
BspANI	GGCC	3 cut(s)	138, 320, 425
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	2 cut(s)	149, 446
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	3 cut(s)	46, 124, 301
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	303, 426, 596
BssNI	GRCGYC	2 cut(s)	45, 105
BssT1I	CCWWGG	2 cut(s)	426, 596
Bst2UI	CCWGG	2 cut(s)	140, 305
BstACI	GRCGYC	2 cut(s)	45, 105
BstBAI	YACGTR	2 cut(s)	343, 618
BstC8I	GCNNGC	2 cut(s)	73, 503
BstDEI	CTNAG	1 cut(s)	579
BstFNI	CGCG	2 cut(s)	149, 446
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
BstNI	CCWGG	2 cut(s)	140, 305
BstSCI	CCNGG	4 cut(s)	138, 160, 303, 452
BstUI	CGCG	2 cut(s)	149, 446
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	138, 320, 425
BtgZI	GCGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	73, 503
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	122, 142
CseI	GACGC	2 cut(s)	113, 552
Csp6I	GTAC	3 cut(s)	373, 487, 615
CviAII	CATG	2 cut(s)	217, 268
CviQI	GTAC	3 cut(s)	373, 487, 615
DdeI	CTNAG	1 cut(s)	579
DinI	GGCGCC	1 cut(s)	46
EaeI	YGGCCR	2 cut(s)	318, 423
EciI	GGCGGA	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	426, 596
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	122, 142
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	35
Eco72I	CACGTG	1 cut(s)	343
Eco88I	CYCGRG	2 cut(s)	352, 496
EcoICRI	GAGCTC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	138, 303
EcoT14I	CCWWGG	2 cut(s)	426, 596
EcoT38I	GRGCYC	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	426, 596
FaeI	CATG	2 cut(s)	220, 271
FaiI	YATR	4 cut(s)	218, 269, 465, 632
FaqI	GGGAC	2 cut(s)	173, 436
FatI	CATG	2 cut(s)	216, 267
FauI	CCCGC	1 cut(s)	229
Fnu4HI	GCNGC	4 cut(s)	43, 48, 51, 117
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	4 cut(s)	43, 48, 51, 117
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	43, 48, 51, 117
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	138, 320, 425
HapII	CCGG	4 cut(s)	120, 162, 283, 454
HgaI	GACGC	2 cut(s)	113, 552
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 105
Hin1II	CATG	2 cut(s)	220, 271
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	4 cut(s)	289, 314, 337, 431
HpaI	GTTAAC	1 cut(s)	603
HpaII	CCGG	4 cut(s)	120, 162, 283, 454
Hpy166II	GTNNAC	1 cut(s)	603
Hpy188I	TCNGA	2 cut(s)	15, 89
Hpy188III	TCNNGA	3 cut(s)	154, 217, 293
Hpy8I	GTNNAC	1 cut(s)	603
Hpy99I	CGWCG	5 cut(s)	62, 107, 179, 400, 403
HpyAV	CCTTC	2 cut(s)	10, 121
HpyCH4IV	ACGT	5 cut(s)	57, 186, 342, 401, 617
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
HpyF3I	CTNAG	1 cut(s)	579
HpySE526I	ACGT	5 cut(s)	57, 186, 342, 401, 617
Hsp92I	GRCGYC	2 cut(s)	45, 105
Hsp92II	CATG	2 cut(s)	220, 271
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KspAI	GTTAAC	1 cut(s)	603
LmnI	GCTCC	1 cut(s)	392
LweI	GCATC	2 cut(s)	17, 582
MaeII	ACGT	5 cut(s)	57, 186, 342, 401, 617
MaeIII	GTNAC	1 cut(s)	23
MbiI	CCGCTC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	58, 160
MhlI	GDGCHC	3 cut(s)	224, 312, 348
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	3 cut(s)	250, 256, 571
MluNI	TGGCCA	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	7 cut(s)	155, 264, 348, 450, 505, 519, 574
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	2 cut(s)	552, 602
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	425
MspI	CCGG	4 cut(s)	120, 162, 283, 454
MspR9I	CCNGG	4 cut(s)	140, 162, 305, 454
MvaI	CCWGG	2 cut(s)	140, 305
MvnI	CGCG	2 cut(s)	149, 446
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 113, 135
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	2 cut(s)	162, 454
NlaIII	CATG	2 cut(s)	220, 271
NlaIV	GGNNCC	3 cut(s)	46, 124, 301
NmeAIII	GCCGAG	2 cut(s)	327, 634
PaeR7I	CTCGAG	2 cut(s)	352, 496
PagI	TCATGA	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	183, 407
PfeI	GAWTC	4 cut(s)	289, 314, 337, 431
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	44, 49, 52, 118
PluTI	GGCGCC	1 cut(s)	48
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	2 cut(s)	343, 618
Psp124BI	GAGCTC	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	138, 303
PspCI	CACGTG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	138, 303
PspN4I	GGNNCC	3 cut(s)	46, 124, 301
PspPI	GGNCC	2 cut(s)	122, 142
PspXI	VCTCGAGB	2 cut(s)	352, 496
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	3 cut(s)	374, 488, 616
RsaNI	GTAC	3 cut(s)	373, 487, 615
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	552, 602
SatI	GCNGC	4 cut(s)	43, 48, 51, 117
Sau96I	GGNCC	2 cut(s)	122, 142
ScaI	AGTACT	1 cut(s)	374
ScrFI	CCNGG	4 cut(s)	140, 162, 305, 454
SduI	GDGCHC	3 cut(s)	224, 312, 348
SfaNI	GCATC	2 cut(s)	17, 582
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	2 cut(s)	352, 496
SinI	GGWCC	2 cut(s)	122, 142
SlaI	CTCGAG	2 cut(s)	352, 496
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	352, 496
SmoI	CTYRAG	2 cut(s)	352, 496
Sse9I	AATT	3 cut(s)	250, 256, 571
SsiI	CCGC	8 cut(s)	42, 48, 51, 117, 149, 236, 390, 446
SspDI	GGCGCC	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	4 cut(s)	138, 160, 303, 452
StyI	CCWWGG	2 cut(s)	426, 596
TaiI	ACGT	5 cut(s)	60, 189, 345, 404, 620
TaqI	TCGA	6 cut(s)	153, 177, 312, 353, 497, 524
TasI	AATT	3 cut(s)	250, 256, 571
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	4 cut(s)	45, 50, 53, 119
TfiI	GAWTC	4 cut(s)	289, 314, 337, 431
Tru1I	TTAA	2 cut(s)	552, 602
Tru9I	TTAA	2 cut(s)	552, 602
TscAI	CASTG	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	17, 160, 205
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	122, 142
XapI	RAATTY	1 cut(s)	250
XhoI	CTCGAG	2 cut(s)	352, 496
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.