Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Forward (+)

34347858 .. 34350242

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G381300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATGAAGGCATCTCTGAAGGGCAAGTACGAGACAGACAAGAGCGGCGCGGCCGCAAACATCTCCGTTTTCGCCAGCGATGTCAAGTTCCGAGCTTCACTTACCGACGCCACCTTCGCCGCCGGACCCAGCTTAAACGGCTTGGTTCTAGCCGTAGAAAAACCCGGCTCCTTCATCGTCGATTACAACGTTCCCAAAAAGGACTTTAGGTTTCAGTTCTTGAACTCAGTTAGGGTTGCTGGTAAGCCGTTGAATTTGAATTACATTCACAGCAGAGGTGACAATAGAACTATTTTGGACGGAACCCTGGTGCTCGATTCGGCCAACAAGGTATCGGCTAATCACGTGCTTGGCTCGAGGAATGGCAAGTTCAAGTACTCTTATCTGCACGGCGGCGTGACCACGTTTGAGCCCTCCTACGATTTGGCTAAGAACTCGTGGGATTTTGCGGTTTCTCGGAGGGTTTATGGTGATGATGTGTTTAGGGCTTCGTACCAGACGTCGAGCAAGCTGTTGGGGTTGGAATGGTCGAGGAATTCAAAAATTAATGGCTCTTTCAGGGTTTTAGCATCCGTCAATTTGGCTGAGGAACAAAAAATCCCAAAATTAACTGCTGAGAGTACCTGGGATTTCGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.53

Weight (kDa)

9.5

Isoelectric Point (pI)

18.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	50
AciI	CCGC	6 cut(s)	45, 50, 54, 120, 393, 449
AclI	AACGTT	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	51, 321
AcsI	RAATTY	2 cut(s)	253, 535
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	346
AcyI	GRCGYC	2 cut(s)	108, 500
AfaI	GTAC	4 cut(s)	29, 377, 494, 622
AgsI	TTSAA	5 cut(s)	223, 253, 259, 373, 540
AjnI	CCWGG	2 cut(s)	306, 623
AloI	GAACNNNNNNTCC	2 cut(s)	582, 614
AluBI	AGCT	3 cut(s)	95, 132, 511
AluI	AGCT	3 cut(s)	95, 132, 511
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	51, 321
ApoI	RAATTY	2 cut(s)	253, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	290, 482
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	414
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	1 cut(s)	436
BbrPI	CACGTG	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	585
BceAI	ACGGC	4 cut(s)	137, 154, 232, 406
BciT130I	CCWGG	2 cut(s)	308, 625
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	5 cut(s)	46, 51, 54, 120, 394
BlsI	GCNGC	5 cut(s)	47, 52, 55, 121, 395
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	3 cut(s)	165, 308, 625
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	127, 169, 304
BmrFI	CCNGG	3 cut(s)	165, 308, 625
BmsI	GCATC	2 cut(s)	20, 578
Bpu10I	CCTNAGC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	2 cut(s)	108, 500
BsaJI	CCNNGG	2 cut(s)	306, 624
BseBI	CCWGG	2 cut(s)	308, 625
BseDI	CCNNGG	2 cut(s)	306, 624
BseGI	GGATG	1 cut(s)	569
BseMII	CTCAG	3 cut(s)	240, 576, 606
BseX3I	CGGCCG	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	53, 323
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	123, 165
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	53, 323
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	315, 414
BspACI	CCGC	6 cut(s)	45, 50, 54, 120, 393, 449
BspANI	GGCC	2 cut(s)	53, 323
BspCNI	CTCAG	3 cut(s)	239, 577, 607
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	127, 169, 304
BsrBI	CCGCTC	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	306, 624
BssNI	GRCGYC	2 cut(s)	108, 500
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	308, 625
BstACI	GRCGYC	2 cut(s)	108, 500
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	76, 509
BstDEI	CTNAG	4 cut(s)	226, 429, 585, 615
BstF5I	GGATG	1 cut(s)	569
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	26
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 138
BstNI	CCWGG	2 cut(s)	308, 625
BstSCI	CCNGG	3 cut(s)	163, 306, 623
BstUI	CGCG	1 cut(s)	50
BstZI	CGGCCG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	53, 323
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	569
Cac8I	GCNNGC	2 cut(s)	76, 509
CciNI	GCGGCCGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	28, 376, 493, 621
CviQI	GTAC	4 cut(s)	28, 376, 493, 621
DdeI	CTNAG	4 cut(s)	226, 429, 585, 615
EaeI	YGGCCR	2 cut(s)	51, 321
EagI	CGGCCG	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	306, 623
EcoT38I	GRGCYC	1 cut(s)	414
FaiI	YATR	1 cut(s)	468
Fnu4HI	GCNGC	5 cut(s)	46, 51, 54, 120, 394
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	5 cut(s)	46, 51, 54, 120, 394
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	5 cut(s)	46, 51, 54, 120, 394
GsaI	CCCAGC	1 cut(s)	132
HaeIII	GGCC	2 cut(s)	53, 323
HapII	CCGG	2 cut(s)	123, 165
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	108, 500
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	2 cut(s)	123, 165
HphI	GGTGA	2 cut(s)	290, 482
Hpy188I	TCNGA	3 cut(s)	18, 92, 459
Hpy188III	TCNNGA	2 cut(s)	220, 634
Hpy99I	CGWCG	3 cut(s)	110, 182, 505
HpyAV	CCTTC	3 cut(s)	13, 124, 181
HpyCH4IV	ACGT	4 cut(s)	189, 345, 404, 500
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 138
HpyF3I	CTNAG	4 cut(s)	226, 429, 585, 615
HpySE526I	ACGT	4 cut(s)	189, 345, 404, 500
Hsp92I	GRCGYC	2 cut(s)	108, 500
HspAI	GCGC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	173
LweI	GCATC	2 cut(s)	20, 578
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	4 cut(s)	189, 345, 404, 500
MaeIII	GTNAC	2 cut(s)	278, 397
MbiI	CCGCTC	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	315, 414
MluCI	AATT	6 cut(s)	253, 259, 535, 543, 577, 605
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	6 cut(s)	269, 351, 424, 453, 525, 580
MseI	TTAA	3 cut(s)	134, 546, 608
MspI	CCGG	2 cut(s)	123, 165
MspR9I	CCNGG	3 cut(s)	165, 308, 625
MvaI	CCWGG	2 cut(s)	308, 625
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	116, 138
NciI	CCSGG	1 cut(s)	165
NlaIV	GGNNCC	3 cut(s)	127, 169, 304
NmuCI	GTSAC	2 cut(s)	278, 397
NotI	GCGGCCGC	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 497
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	47, 52, 55, 121, 395
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	306, 623
PspCI	CACGTG	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	2 cut(s)	306, 623
PspN4I	GGNNCC	3 cut(s)	127, 169, 304
PspPI	GGNCC	1 cut(s)	125
PspXI	VCTCGAGB	1 cut(s)	355
RsaI	GTAC	4 cut(s)	29, 377, 494, 622
RsaNI	GTAC	4 cut(s)	28, 376, 493, 621
SaqAI	TTAA	3 cut(s)	134, 546, 608
SatI	GCNGC	5 cut(s)	46, 51, 54, 120, 394
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	1 cut(s)	377
ScrFI	CCNGG	3 cut(s)	165, 308, 625
SduI	GDGCHC	2 cut(s)	315, 414
SfaNI	GCATC	2 cut(s)	20, 578
Sfr274I	CTCGAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	6 cut(s)	253, 259, 535, 543, 577, 605
SsiI	CCGC	6 cut(s)	45, 50, 54, 120, 393, 449
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	163, 306, 623
TaiI	ACGT	4 cut(s)	192, 348, 407, 503
TaqI	TCGA	6 cut(s)	180, 315, 356, 503, 530, 633
TasI	AATT	6 cut(s)	253, 259, 535, 543, 577, 605
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	5 cut(s)	48, 53, 56, 122, 396
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	3 cut(s)	134, 546, 608
Tru9I	TTAA	3 cut(s)	134, 546, 608
TseFI	GTSAC	2 cut(s)	278, 397
Tsp45I	GTSAC	2 cut(s)	278, 397
TspDTI	ATGAA	2 cut(s)	20, 163
TspGWI	ACGGA	3 cut(s)	55, 315, 562
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	253, 535
XhoI	CTCGAG	1 cut(s)	355
XspI	CTAG	1 cut(s)	149
ZraI	GACGTC	1 cut(s)	501
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.