Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

16208140 .. 16211010

Gene Structure 2871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001484

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCTCCGAGCTTCCCTCACCGACGACACCATCGTTGGCTGCCCCAGCCTCAACAGCTTGGTTCTAGCAGTAAAAAAACCCGGTGTGTTCATCGTCGACTACAGCATCCCCAAAAAGGTACACATAAATTTTCACTCTCATAACTTCAATCACCGCCAAGACGTGGCCATTTTTACCAACTCCCCCAATTTCAATTGTGGTTGTAGAACTTCAACCTTCAAGATTCAGTTTATGAACACAGTTAGGATTGCTGACAAGCCCTTGAATTTGACTTACATTCACAGCAAAGGTGATAACATGTCTATTTTGGACCGGACTCAGGTGCTCAATCTAGCCAACAAGATCTCGGGCAATCACATACTCGGCACCGGAAATGACCACCATCTGCTCGTCATCATCGTCCTCAGCGGACTAGGTGCTCTGCCAAGCTTCAAGAAGGTGAAGGAGTCATATTTGGGGAAGAGAGTGACGAAGCTGCACAGGAAGCTGAGCTTTTTAAATGAGTATCTACTGGAGGATAAGAAGCCGGTTCATGCTTGGTCTGTGATTCTATTCGTTGCTGCTTTGGCTTTTGCAGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.58

Weight (kDa)

9.77

Isoelectric Point (pI)

17.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	2 cut(s)	154, 408
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	127, 265
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	115, 163, 319
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	148, 193, 213, 220, 265, 433
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	6 cut(s)	11, 57, 429, 475, 487, 492
AluI	AGCT	6 cut(s)	11, 57, 429, 475, 487, 492
Alw21I	GWGCWC	2 cut(s)	327, 421
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	39, 475, 560
ApoI	RAATTY	2 cut(s)	127, 265
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	4 cut(s)	10, 143, 302, 451
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	327, 421
BbvCI	CCTCAGC	1 cut(s)	404
BbvI	GCAGC	3 cut(s)	26, 462, 547
BccI	CCATC	2 cut(s)	38, 390
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	3 cut(s)	65, 332, 413
BfmI	CTRYAG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	566
BglII	AGATCT	1 cut(s)	342
BisI	GCNGC	3 cut(s)	40, 476, 561
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	3 cut(s)	41, 477, 562
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	114
BplI	GAGNNNNNCTC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	81
BsaWI	WCCGGW	2 cut(s)	312, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 163, 319
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	115, 163, 319
BseMII	CTCAG	3 cut(s)	332, 418, 479
BseNI	ACTGG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	26, 462, 547
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	2 cut(s)	327, 421
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	81, 313, 369, 527
BslI	CCNNNNNNNGG	3 cut(s)	115, 163, 319
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	327, 421
Bsp143I	GATC	1 cut(s)	342
Bsp1720I	GCTNAGC	1 cut(s)	488
BspACI	CCGC	2 cut(s)	154, 408
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	3 cut(s)	331, 417, 480
BspLI	GGNNCC	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	526
BssMI	GATC	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	318, 404, 488
BstF5I	GGATG	1 cut(s)	105
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 54, 484, 566
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	3 cut(s)	26, 462, 547
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	566
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	3 cut(s)	298, 533, 582
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	318, 404, 488
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	346
FaeI	CATG	3 cut(s)	301, 536, 585
FaiI	YATR	8 cut(s)	125, 141, 233, 299, 359, 451, 534, 583
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	3 cut(s)	297, 532, 581
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	40, 476, 561
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	40, 476, 561
FspBI	CTAG	3 cut(s)	65, 332, 413
GluI	GCNGC	3 cut(s)	40, 476, 561
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	4 cut(s)	81, 313, 369, 527
Hin1II	CATG	3 cut(s)	301, 536, 585
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	4 cut(s)	223, 316, 446, 547
HpaII	CCGG	4 cut(s)	81, 313, 369, 527
HphI	GGTGA	4 cut(s)	10, 143, 302, 451
Hpy166II	GTNNAC	2 cut(s)	97, 121
Hpy188I	TCNGA	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	220, 433
Hpy8I	GTNNAC	2 cut(s)	97, 121
Hpy99I	CGWCG	2 cut(s)	26, 98
HpyAV	CCTTC	3 cut(s)	226, 430, 436
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	478, 575, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 54, 484, 566
HpyF3I	CTNAG	3 cut(s)	318, 404, 488
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	301, 536, 585
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	9 cut(s)	58, 94, 305, 326, 382, 466, 497, 540, 561
Lsp1109I	GCAGC	3 cut(s)	26, 462, 547
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	3 cut(s)	65, 332, 413
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	472
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	327, 421
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	4 cut(s)	127, 187, 193, 265
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	310, 455
MnlI	CCTC	4 cut(s)	26, 59, 413, 508
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	4 cut(s)	81, 313, 369, 527
MspR9I	CCNGG	1 cut(s)	81
MunI	CAATTG	1 cut(s)	193
MwoI	GCNNNNNNNGC	4 cut(s)	45, 54, 484, 566
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	3 cut(s)	301, 536, 585
NlaIV	GGNNCC	1 cut(s)	367
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	466
NspI	RCATGY	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	566
PciI	ACATGT	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 396
PfeI	GAWTC	2 cut(s)	223, 547
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	41, 477, 562
PleI	GAGTC	2 cut(s)	310, 454
PpsI	GAGTC	2 cut(s)	310, 454
PscI	ACATGT	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	3 cut(s)	40, 476, 561
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	310, 455
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	327, 421
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	4 cut(s)	127, 187, 193, 265
SsiI	CCGC	2 cut(s)	154, 408
SspMI	CTAG	3 cut(s)	65, 332, 413
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	96
TasI	AATT	4 cut(s)	127, 187, 193, 265
TfiI	GAWTC	2 cut(s)	223, 547
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	39, 475, 560
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	79, 248, 521
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	2 cut(s)	127, 265
XceI	RCATGY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	3 cut(s)	65, 332, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.