Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Forward (+)

5451429 .. 5452124

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG065000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAAGGCCCTACACAAAAGGCAATTGGACATGATCACTCTACAACTAAGAAGCGGACTCATTGCTCTGCGAAGCTTCAAGAAGGTGAAGGAGTCGTATTTGGGGAAGAGAGAGATGAAGCTGCGCAAGAAGCTGAGCTTTTTGAATGAGGATCTGCCGGAGGATAAGAAGCTTGTTCATGCTTGGTCTGTGATTCTATTCATTGCTGCTTTGGCTTTTGCAAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

76

Amino Acids

8.81

Weight (kDa)

10.29

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	79, 145
AluBI	AGCT	5 cut(s)	75, 121, 133, 138, 172
AluI	AGCT	5 cut(s)	75, 121, 133, 138, 172
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	121, 206
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	108, 193
BclI	TGATCA	1 cut(s)	33
BisI	GCNGC	2 cut(s)	122, 207
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	2 cut(s)	123, 208
BmgT120I	GGNCC	1 cut(s)	7
Bpu1102I	GCTNAGC	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	60, 201
BseMI	GCAATG	2 cut(s)	60, 201
BseMII	CTCAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	108, 193
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	158
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	33, 151
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	126
BspPI	GGATC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	60, 201
BssMI	GATC	2 cut(s)	33, 151
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	47, 134
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	36, 154
BstMBI	GATC	2 cut(s)	33, 151
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 212
BstV1I	GCAGC	2 cut(s)	108, 193
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	2 cut(s)	31, 179
CviJI	RGCY	7 cut(s)	8, 75, 121, 133, 138, 172, 215
CviKI_1	RGCY	7 cut(s)	8, 75, 121, 133, 138, 172, 215
DdeI	CTNAG	2 cut(s)	47, 134
DpnI	GATC	2 cut(s)	35, 153
DpnII	GATC	2 cut(s)	33, 151
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	7
FaeI	CATG	2 cut(s)	34, 182
FaiI	YATR	2 cut(s)	32, 180
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	2 cut(s)	30, 178
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	122, 207
Fsp4HI	GCNGC	2 cut(s)	122, 207
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	122, 207
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	34, 182
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	73, 170
HinfI	GANTC	3 cut(s)	57, 92, 193
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	76, 82
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 212
HpyF3I	CTNAG	2 cut(s)	47, 134
Hsp92II	CATG	2 cut(s)	34, 182
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	33, 151
LpnPI	CCDG	1 cut(s)	171
Lsp1109I	GCAGC	2 cut(s)	108, 193
MalI	GATC	2 cut(s)	35, 153
MboI	GATC	2 cut(s)	33, 151
MboII	GAAGA	1 cut(s)	118
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	51, 101
MnlI	CCTC	2 cut(s)	142, 154
MspI	CCGG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	130, 212
NdeII	GATC	2 cut(s)	33, 151
NlaIII	CATG	2 cut(s)	34, 182
NsbI	TGCGCA	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	123, 208
PleI	GAGTC	2 cut(s)	51, 100
PpsI	GAGTC	2 cut(s)	51, 100
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	151
SatI	GCNGC	2 cut(s)	122, 207
Sau3AI	GATC	2 cut(s)	33, 151
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	2 cut(s)	51, 101
SetI	ASST	6 cut(s)	77, 87, 123, 135, 140, 174
SgeI	CNNG	7 cut(s)	43, 91, 139, 170, 185, 191, 195
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	1 cut(s)	54
TasI	AATT	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	121, 206
TspDTI	ATGAA	4 cut(s)	17, 131, 167, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.