Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

28593289 .. 28595717

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGACGATGAAGGCATCTTTGAAGGGTAAGTACGACACAGACAAGAGCGGCGCCGCCGCAAACGTCGCCGTTTTCGCCAGCGACGTCAAGCTCCGCGCTTCTCTCACCGACGCCACCGTCGTCGGCGGCCCCAGCCTCAACGGCCTCGTTCTCGCCGTCGAAAAACCCGGCCTCTTCATCGTCGACTACAACGTCCCCAAAAAGGACTTTAGGTTTCAGTTCATGAACTCGGTTAGGGTTGTGGATAAGCCGTTGAATTTGACTTATATTCATAGCCAAGGTGACAATAGGACTATTCTGGACGGGACTCTGGTGCTGAACTCGGCCAACAAGGTCTCGGCGAATCACGTGCTCGGCACCGGAAATGGGAAGTTCAAGTACAGTTATGTGCACGGTGGGTTGACCACGTTCGAGCCCAGCTATGACTTAGCTAAGAACTCGTGGGATTTCGCGGTTTCGAGGAGGGTTTATGGAGATGATGTGTTCAGGGCTAGTTACCAGACTTCGAGCAAGCTGTTGGGGCTCGAATGGTCCAGGAATTCCAAAGTTAATGGCTCTTTCAAGGTGTCAGCTTCTTACAACTTGGCCGAGGAACACAAGGTGCCAAAGTTAACCGCCGAGAGTACTTGGGATTTTGAGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.51

Weight (kDa)

9.24

Isoelectric Point (pI)

13.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	116, 191
AatII	GACGTC	1 cut(s)	87
AccB1I	GGYRCC	3 cut(s)	50, 356, 601
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	2 cut(s)	96, 452
AciI	CCGC	7 cut(s)	48, 54, 57, 94, 126, 452, 615
AcoI	YGGCCR	2 cut(s)	324, 585
AcsI	RAATTY	2 cut(s)	256, 538
AcvI	CACGTG	1 cut(s)	349
AcyI	GRCGYC	3 cut(s)	51, 84, 111
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	3 cut(s)	32, 380, 625
AfiI	CCNNNNNNNGG	2 cut(s)	202, 366
AgsI	TTSAA	4 cut(s)	22, 256, 376, 562
AjnI	CCWGG	1 cut(s)	533
AluBI	AGCT	5 cut(s)	91, 420, 431, 514, 572
AluI	AGCT	5 cut(s)	91, 420, 431, 514, 572
Alw21I	GWGCWC	2 cut(s)	354, 393
Alw26I	GTCTC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	389
AoxI	GGCC	5 cut(s)	127, 142, 169, 324, 585
ApaLI	GTGCAC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	256, 538
AspLEI	GCGC	2 cut(s)	53, 98
AspS9I	GGNCC	2 cut(s)	128, 531
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	97, 293
AvaII	GGWCC	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	3 cut(s)	50, 356, 601
BanII	GRGCYC	2 cut(s)	417, 525
BarI	GAAGNNNNNNTAC	4 cut(s)	14, 46, 362, 394
BauI	CACGAG	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	354, 393
BceAI	ACGGC	4 cut(s)	53, 140, 157, 235
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	49, 54, 57, 127
BlsI	GCNGC	4 cut(s)	50, 55, 58, 128
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	168, 535
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	2 cut(s)	128, 531
BmiI	GGNNCC	4 cut(s)	52, 130, 358, 603
BmrFI	CCNGG	2 cut(s)	168, 535
BmsI	GCATC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	3 cut(s)	51, 84, 111
BsaI	GGTCTC	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	277, 588
BsaWI	WCCGGW	1 cut(s)	359
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 366
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	277, 588
BseLI	CCNNNNNNNGG	2 cut(s)	202, 366
BseRI	GAGGAG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	393
BseYI	CCCAGC	2 cut(s)	131, 416
Bsh1236I	CGCG	2 cut(s)	96, 452
BshFI	GGCC	5 cut(s)	129, 144, 171, 326, 587
BshNI	GGYRCC	3 cut(s)	50, 356, 601
BsiHKAI	GWGCWC	2 cut(s)	354, 393
BsiSI	CCGG	2 cut(s)	168, 360
BslFI	GGGAC	2 cut(s)	179, 319
BslI	CCNNNNNNNGG	2 cut(s)	202, 366
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	179, 319
BsnI	GGCC	5 cut(s)	129, 144, 171, 326, 587
Bso31I	GGTCTC	1 cut(s)	340
Bsp1286I	GDGCHC	4 cut(s)	354, 393, 417, 525
BspACI	CCGC	7 cut(s)	48, 54, 57, 94, 126, 452, 615
BspANI	GGCC	5 cut(s)	129, 144, 171, 326, 587
BspFNI	CGCG	2 cut(s)	96, 452
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	52, 130, 358, 603
BspT107I	GGYRCC	3 cut(s)	50, 356, 601
BspTNI	GGTCTC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	277, 588
BssNI	GRCGYC	3 cut(s)	51, 84, 111
BssSI	CACGAG	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	118, 383, 395
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	3 cut(s)	51, 84, 111
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	79, 512
BstDEI	CTNAG	2 cut(s)	427, 432
BstFNI	CGCG	2 cut(s)	96, 452
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 98
BstMAI	GTCTC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 132, 141, 520
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	166, 533
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	2 cut(s)	96, 452
BsuRI	GGCC	5 cut(s)	129, 144, 171, 326, 587
Cac8I	GCNNGC	2 cut(s)	79, 512
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	53, 98
Cfr13I	GGNCC	2 cut(s)	128, 531
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	3 cut(s)	31, 379, 624
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	3 cut(s)	31, 379, 624
DdeI	CTNAG	2 cut(s)	427, 432
DinI	GGCGCC	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	601
DrdI	GACNNNNNNGTC	2 cut(s)	116, 191
DseDI	GACNNNNNNGTC	2 cut(s)	116, 191
EaeI	YGGCCR	2 cut(s)	324, 585
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	2 cut(s)	417, 525
Eco31I	GGTCTC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	531
Eco72I	CACGTG	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	417, 525
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	226
FaiI	YATR	6 cut(s)	224, 267, 273, 387, 423, 471
FaqI	GGGAC	2 cut(s)	179, 319
FatI	CATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	4 cut(s)	49, 54, 57, 127
FriOI	GRGCYC	2 cut(s)	417, 525
Fsp4HI	GCNGC	4 cut(s)	49, 54, 57, 127
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	2 cut(s)	52, 97
GluI	GCNGC	4 cut(s)	49, 54, 57, 127
GsaI	CCCAGC	2 cut(s)	135, 420
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	5 cut(s)	129, 144, 171, 326, 587
HapII	CCGG	2 cut(s)	168, 360
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	2 cut(s)	53, 98
Hin1I	GRCGYC	3 cut(s)	51, 84, 111
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	2 cut(s)	51, 96
HinP1I	GCGC	2 cut(s)	51, 96
HincII	GTYRAC	3 cut(s)	184, 402, 612
HindII	GTYRAC	3 cut(s)	184, 402, 612
HinfI	GANTC	2 cut(s)	307, 343
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	2 cut(s)	168, 360
HphI	GGTGA	2 cut(s)	97, 293
Hpy166II	GTNNAC	4 cut(s)	184, 391, 402, 612
Hpy188III	TCNNGA	2 cut(s)	223, 299
Hpy8I	GTNNAC	4 cut(s)	184, 391, 402, 612
Hpy99I	CGWCG	7 cut(s)	68, 86, 113, 122, 125, 161, 185
HpyAV	CCTTC	2 cut(s)	4, 16
HpyCH4III	ACNGT	3 cut(s)	118, 383, 395
HpyCH4IV	ACGT	5 cut(s)	63, 84, 192, 348, 407
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 132, 141, 520
HpyF3I	CTNAG	2 cut(s)	427, 432
HpySE526I	ACGT	5 cut(s)	63, 84, 192, 348, 407
Hsp92I	GRCGYC	3 cut(s)	51, 84, 111
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	2 cut(s)	51, 96
KasI	GGCGCC	1 cut(s)	50
KspAI	GTTAAC	1 cut(s)	612
LmnI	GCTCC	1 cut(s)	96
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	5 cut(s)	63, 84, 192, 348, 407
MaeIII	GTNAC	2 cut(s)	281, 494
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	4 cut(s)	354, 393, 417, 525
MluCI	AATT	2 cut(s)	256, 538
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	146, 155, 182, 453, 456, 583
MseI	TTAA	2 cut(s)	549, 611
MspI	CCGG	2 cut(s)	168, 360
MspR9I	CCNGG	2 cut(s)	168, 535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	2 cut(s)	96, 452
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 132, 141, 520
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	168
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	4 cut(s)	52, 130, 358, 603
NmeAIII	GCCGAG	5 cut(s)	302, 317, 333, 613, 643
NmuCI	GTSAC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	4 cut(s)	81, 117, 153, 189
PfeI	GAWTC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	50, 55, 58, 128
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	349
PmlI	CACGTG	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	533
PspCI	CACGTG	1 cut(s)	349
PspFI	CCCAGC	2 cut(s)	131, 416
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	4 cut(s)	52, 130, 358, 603
PspPI	GGNCC	2 cut(s)	128, 531
RsaI	GTAC	3 cut(s)	32, 380, 625
RsaNI	GTAC	3 cut(s)	31, 379, 624
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	549, 611
SatI	GCNGC	4 cut(s)	49, 54, 57, 127
Sau96I	GGNCC	2 cut(s)	128, 531
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	168, 535
SduI	GDGCHC	4 cut(s)	354, 393, 417, 525
SfaNI	GCATC	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	531
Sse9I	AATT	2 cut(s)	256, 538
SsiI	CCGC	7 cut(s)	48, 54, 57, 94, 126, 452, 615
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	166, 533
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	118, 383, 395
TaiI	ACGT	5 cut(s)	66, 87, 195, 351, 410
TaqI	TCGA	6 cut(s)	159, 183, 411, 458, 506, 525
TasI	AATT	2 cut(s)	256, 538
TatI	WGTACW	2 cut(s)	378, 623
TauI	GCSGC	4 cut(s)	51, 56, 59, 129
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	549, 611
Tru9I	TTAA	2 cut(s)	549, 611
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	23, 166, 211, 239, 260
VneI	GTGCAC	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	531
XapI	RAATTY	2 cut(s)	256, 538
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	85
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.