Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Forward (+)

50894241 .. 50895473

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G034350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATAAACAAGCATCTTTACAAGGTAGGTACAACACAGATAAGAGCGCTGCCGCCACAAACTTCTTCGTTTTCTCCAAAGACGCCAAGCTCCGAGCTTCCCTCACCGACGACACCATCGTCGACGGCCCCAGCCTCAACGGCTTGGTTCTAGTCGTCAAAAAACCCGGTGTGTTCATTGTCGACTACAACGTCCCCAAAAAGTTTATGAACACAGTTAGGTTTGCAGACAAGCCCTTGAATTTGACTTACATTCACAGCAAAGGTGATAACAGGTCTATTTTGGACTGGACTCAAGTGCTCAATCTAGCCAACAAGATCTCGGGCAATCACGTACTCGACACTGGAAATGATTTGTTAGTAAAATCTGACAAGATAAATATATTCTGGCAGCAAAGTATCCAAGACTTCAAACACACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.83

Weight (kDa)

9.13

Isoelectric Point (pI)

10.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 191
AccI	GTMKAC	2 cut(s)	123, 183
AciI	CCGC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	32, 336
AfeI	AGCGCT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	241, 412
AluBI	AGCT	2 cut(s)	91, 98
AluI	AGCT	2 cut(s)	91, 98
Alw21I	GWGCWC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	49
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	50, 391
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	97, 278
AvaI	CYCGRG	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	37, 403
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	2 cut(s)	142, 157
BciVI	GTATCC	1 cut(s)	410
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	2 cut(s)	152, 308
BfoI	RGCGCY	1 cut(s)	51
BfuI	GTATCC	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	141
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	3 cut(s)	51, 54, 392
BlsI	GCNGC	3 cut(s)	52, 55, 393
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	84
Bse1I	ACTGG	2 cut(s)	293, 349
BseNI	ACTGG	2 cut(s)	293, 349
BseXI	GCAGC	2 cut(s)	37, 403
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	293, 349
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	37, 403
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	342, 417
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	31, 335
CviJI	RGCY	7 cut(s)	91, 98, 129, 135, 144, 235, 311
CviKI_1	RGCY	7 cut(s)	91, 98, 129, 135, 144, 235, 311
CviQI	GTAC	2 cut(s)	31, 335
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DrdI	GACNNNNNNGTC	2 cut(s)	119, 191
DseDI	GACNNNNNNGTC	2 cut(s)	119, 191
Eco47III	AGCGCT	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	322
FaiI	YATR	2 cut(s)	209, 383
FaqI	GGGAC	1 cut(s)	179
FblI	GTMKAC	2 cut(s)	123, 183
Fnu4HI	GCNGC	3 cut(s)	51, 54, 392
Fsp4HI	GCNGC	3 cut(s)	51, 54, 392
FspBI	CTAG	2 cut(s)	152, 308
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	51, 54, 392
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	2 cut(s)	124, 184
HindII	GTYRAC	2 cut(s)	124, 184
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	97, 278
Hpy166II	GTNNAC	2 cut(s)	124, 184
Hpy188I	TCNGA	2 cut(s)	95, 370
Hpy8I	GTNNAC	2 cut(s)	124, 184
Hpy99I	CGWCG	3 cut(s)	113, 125, 128
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	192, 333
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	192, 333
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	96
LpnPI	CCDG	6 cut(s)	145, 181, 259, 274, 330, 373
Lsp1109I	GCAGC	2 cut(s)	37, 403
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	152, 308
MaeII	ACGT	2 cut(s)	192, 333
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	286
MnlI	CCTC	2 cut(s)	113, 146
MseI	TTAA	1 cut(s)	424
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 189
PkrI	GCNGC	3 cut(s)	52, 55, 393
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	32, 336
RsaNI	GTAC	2 cut(s)	31, 335
SalI	GTCGAC	2 cut(s)	122, 182
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	3 cut(s)	51, 54, 392
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	9 cut(s)	28, 32, 93, 100, 195, 224, 268, 278, 336
SfaNI	GCATC	1 cut(s)	23
SgrDI	CGTCGACG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	152, 308
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	195, 336
TaqI	TCGA	3 cut(s)	123, 183, 339
TasI	AATT	1 cut(s)	241
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	2 cut(s)	349, 424
TseI	GCWGC	2 cut(s)	50, 391
TspDTI	ATGAA	2 cut(s)	166, 224
TspRI	CASTG	2 cut(s)	349, 424
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	2 cut(s)	123, 183
XspI	CTAG	2 cut(s)	152, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.