Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Forward (+)

17235092 .. 17236679

Gene Structure 1588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCGATGAAGGCTTCTATCAAAGGCAAGTACGATACTGACAAAACCAGTGGAATCGGTTCACTTGCTTTCAACGCCGGCGATATTAAGCTACGCGCCACCATGACCGATGCTACTCTCGTCGCCGGTCCTACTTTGACCGGTCTCGCTCTCGCTGTAGAGAAGCCTGGTTCCTTCATCGTCGAGTACAACGTCCCTAAAAAGGATGTTAGGTTTCAGTTCATGAACACAGTAAGAATTGCAGAGAAGCCTTTGAATTTGACTTACATTCATAGCAGAGCTGATAACAGAACAATTGTCGATGGGAGCCTTGTGATTGATTCTGCAAACAAACTCTCTGCTAACCACATGGTTGGGACAAACAACTGTAAGATTAAGTATACCTATGCTCATGGAGGGTTAGCTACGTTCGAGCCGTGTTATGACTTGGCGAAAAATACATGGGATTTTGCGGTTTCTCGAAGATTTTATAGTGGTGATAATGTGAGGGCAACTTATCAGACGTCTAGTAAGTTGTTGGGTATGGAATGGTCAAGGAACAACAAAGCAAGTGGATTCAAGGTATGTGCGTCTGTGAATCTTGCGGATGAACTGAAAACGCCGAAATTGACCGCAGAAACTACATGGAACCTTGAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.41

Weight (kDa)

9.27

Isoelectric Point (pI)

13.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	380
AccII	CGCG	1 cut(s)	96
AciI	CCGC	3 cut(s)	452, 584, 612
AcsI	RAATTY	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	2 cut(s)	32, 188
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	73, 256, 559, 635
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	3 cut(s)	91, 281, 404
AluI	AGCT	3 cut(s)	91, 281, 404
Alw26I	GTCTC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	256
AsiGI	ACCGGT	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	128
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	172, 308, 629
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	3 cut(s)	77, 125, 140
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	211, 592
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	96
BshTI	ACCGGT	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	78, 126, 141
BslFI	GGGAC	2 cut(s)	179, 370
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	2 cut(s)	179, 370
Bso31I	GGTCTC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	452, 584, 612
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	172, 308, 629
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	3 cut(s)	77, 125, 140
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	3 cut(s)	77, 125, 140
BssNAI	GTATAC	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	503
Bst1107I	GTATAC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	232, 368
BstACI	GRCGYC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	211, 592
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 74
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	211, 592
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	98
Cfr10I	RCCGGY	3 cut(s)	77, 125, 140
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	31, 187
CspAI	ACCGGT	1 cut(s)	140
CspCI	CAANNNNNGTGG	4 cut(s)	31, 66, 532, 567
CviAII	CATG	6 cut(s)	103, 223, 349, 392, 441, 624
CviJI	RGCY	8 cut(s)	14, 91, 166, 250, 281, 309, 404, 415
CviKI_1	RGCY	8 cut(s)	14, 91, 166, 250, 281, 309, 404, 415
CviQI	GTAC	2 cut(s)	31, 187
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	166
FaeI	CATG	6 cut(s)	106, 226, 352, 395, 444, 627
FaqI	GGGAC	2 cut(s)	179, 370
FatI	CATG	6 cut(s)	102, 222, 348, 391, 440, 623
FblI	GTMKAC	1 cut(s)	380
FokI	GGATG	2 cut(s)	218, 599
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	1 cut(s)	97
HapII	CCGG	3 cut(s)	78, 126, 141
HgaI	GACGC	1 cut(s)	558
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	106, 226, 352, 395, 444, 627
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HinfI	GANTC	4 cut(s)	54, 320, 555, 577
HpaII	CCGG	3 cut(s)	78, 126, 141
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	62, 381
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	223, 459
Hpy8I	GTNNAC	2 cut(s)	62, 381
Hpy99I	CGWCG	2 cut(s)	125, 185
HpyAV	CCTTC	2 cut(s)	4, 184
HpyCH4III	ACNGT	2 cut(s)	232, 368
HpyCH4IV	ACGT	3 cut(s)	192, 407, 503
HpyCH4V	TGCA	2 cut(s)	242, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 74
HpySE526I	ACGT	3 cut(s)	192, 407, 503
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	6 cut(s)	106, 226, 352, 395, 444, 627
HspAI	GCGC	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	306
LpnPI	CCDG	6 cut(s)	61, 91, 139, 153, 154, 180
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	3 cut(s)	192, 407, 503
MboII	GAAGA	1 cut(s)	474
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	4 cut(s)	237, 256, 294, 605
MnlI	CCTC	2 cut(s)	389, 480
MreI	CGCCGGCG	1 cut(s)	77
MroNI	GCCGGC	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	2 cut(s)	87, 375
MspI	CCGG	3 cut(s)	78, 126, 141
MspR9I	CCNGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	11, 74
NaeI	GCCGGC	1 cut(s)	79
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	6 cut(s)	106, 226, 352, 395, 444, 627
NlaIV	GGNNCC	3 cut(s)	172, 308, 629
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 413
PdiI	GCCGGC	1 cut(s)	79
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	4 cut(s)	54, 320, 555, 577
PinAI	ACCGGT	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	3 cut(s)	172, 308, 629
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	2 cut(s)	32, 188
RsaNI	GTAC	2 cut(s)	31, 187
SaqAI	TTAA	2 cut(s)	87, 375
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	156
SgrAI	CRCCGGYG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	128
Sse9I	AATT	4 cut(s)	237, 256, 294, 605
SsiI	CCGC	3 cut(s)	452, 584, 612
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	232, 368
TaiI	ACGT	3 cut(s)	195, 410, 506
TaqI	TCGA	4 cut(s)	183, 300, 411, 460
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	4 cut(s)	237, 256, 294, 605
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	4 cut(s)	54, 320, 555, 577
Tru1I	TTAA	2 cut(s)	87, 375
Tru9I	TTAA	2 cut(s)	87, 375
TscAI	CASTG	1 cut(s)	55
TspDTI	ATGAA	6 cut(s)	23, 166, 211, 239, 260, 603
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	1 cut(s)	507
ZraI	GACGTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.