Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Reverse (-)

8323785 .. 8325695

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011303

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGGCATCTTTGAAGGGTAGGTACGACACAGACAAGAGCGGCGCCGCCGCTAACGTCGCCGTTTTCGCCAGCGACGTCAAGCTCCGAGCTTCTCTCACCGATGCCACCGTCGTCGGTGGCCCCAGCCTCAACGGCTTGGTTCTCGCCGTCGAAAAACCCGGCGTCTTCATCGTCGACTACAACGTCCCCAAAAAGGACTTTAGGTTTCAGTTTATGAACACAGTTAGGGTTGCAGAAAAGCCCTTGAATTTGACTTACATTCACAGCAAAGGTGACAACAGGACTATTTTGGACGGGACTCTGGTGCTTAATCCGGCCAACAAGGTCTCGGCCAATCACGTACTCGGCACCGGAAATGGGAAGCTCAAGTACAGTTATCTGCACGGTGGGGTGACCACGTTCGAGCCTAGCTATGATGTGGCCAAGAATTCGTGGGATTTTGCAGTTTCGAGAAGGGTTTATGGTGATGATGTGTTCAGGGCTAGTTACCAGACTTCGAGCAAGCTCTTGGGGCTGGAATGGTCGAGGAATTCGAAAGTGAATGGCTCTTTCAAGGTGTCAGCATCTGTCAACTTGGCCGAGGAACGTAAAGTGCCTAAGTTAACAGCTGAGAGTACTTGGGATTTTGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.19

Weight (kDa)

9.47

Isoelectric Point (pI)

13.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	2 cut(s)	44, 350
AccBSI	CCGCTC	1 cut(s)	42
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	3 cut(s)	42, 48, 51
AcoI	YGGCCR	4 cut(s)	318, 333, 423, 579
AcsI	RAATTY	3 cut(s)	250, 430, 532
AcyI	GRCGYC	3 cut(s)	45, 78, 165
AfaI	GTAC	4 cut(s)	26, 345, 374, 619
AfiI	CCNNNNNNNGG	2 cut(s)	196, 360
AgsI	TTSAA	3 cut(s)	16, 250, 556
AluBI	AGCT	6 cut(s)	85, 92, 367, 414, 508, 611
AluI	AGCT	6 cut(s)	85, 92, 367, 414, 508, 611
Alw26I	GTCTC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	5 cut(s)	121, 318, 333, 423, 579
ApoI	RAATTY	3 cut(s)	250, 430, 532
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	4 cut(s)	91, 287, 406, 479
AsuII	TTCGAA	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	425
BanI	GGYRCC	2 cut(s)	44, 350
BarI	GAAGNNNNNNTAC	4 cut(s)	8, 40, 356, 388
BbsI	GAAGAC	1 cut(s)	160
BceAI	ACGGC	3 cut(s)	47, 134, 151
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	411, 486
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	3 cut(s)	43, 48, 51
BlsI	GCNGC	3 cut(s)	44, 49, 52
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	3 cut(s)	46, 124, 352
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	3 cut(s)	17, 94, 575
BpiI	GAAGAC	1 cut(s)	160
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	353
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	3 cut(s)	45, 78, 165
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 360
BseDI	CCNNGG	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	196, 360
BseMII	CTCAG	1 cut(s)	603
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	368
BshFI	GGCC	5 cut(s)	123, 320, 335, 425, 581
BshNI	GGYRCC	2 cut(s)	44, 350
BsiSI	CCGG	3 cut(s)	162, 317, 354
BslFI	GGGAC	2 cut(s)	173, 313
BslI	CCNNNNNNNGG	2 cut(s)	196, 360
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	2 cut(s)	173, 313
BsnI	GGCC	5 cut(s)	123, 320, 335, 425, 581
Bso31I	GGTCTC	1 cut(s)	334
Bsp119I	TTCGAA	1 cut(s)	536
BspACI	CCGC	3 cut(s)	42, 48, 51
BspANI	GGCC	5 cut(s)	123, 320, 335, 425, 581
BspCNI	CTCAG	1 cut(s)	604
BspLI	GGNNCC	3 cut(s)	46, 124, 352
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	44, 350
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	582
BssNI	GRCGYC	3 cut(s)	45, 78, 165
Bst4CI	ACNGT	4 cut(s)	112, 226, 377, 389
BstACI	GRCGYC	3 cut(s)	45, 78, 165
BstBAI	YACGTR	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	73, 506
BstDEI	CTNAG	2 cut(s)	600, 612
BstEII	GGTNACC	1 cut(s)	394
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstMAI	GTCTC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 68, 135, 514
BstPI	GGTNACC	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	160
BsuRI	GGCC	5 cut(s)	123, 320, 335, 425, 581
Cac8I	GCNNGC	2 cut(s)	73, 506
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	4 cut(s)	25, 344, 373, 618
CviQI	GTAC	4 cut(s)	25, 344, 373, 618
DdeI	CTNAG	2 cut(s)	600, 612
DinI	GGCGCC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EaeI	YGGCCR	4 cut(s)	318, 333, 423, 579
Eco31I	GGTCTC	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	394
EcoRI	GAATTC	2 cut(s)	430, 532
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaiI	YATR	4 cut(s)	218, 417, 465, 637
FaqI	GGGAC	2 cut(s)	173, 313
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	3 cut(s)	43, 48, 51
Fsp4HI	GCNGC	3 cut(s)	43, 48, 51
FspBI	CTAG	2 cut(s)	411, 486
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	43, 48, 51
GsaI	CCCAGC	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	5 cut(s)	123, 320, 335, 425, 581
HapII	CCGG	3 cut(s)	162, 317, 354
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	3 cut(s)	45, 78, 165
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	3 cut(s)	178, 574, 606
HindII	GTYRAC	3 cut(s)	178, 574, 606
HinfI	GANTC	1 cut(s)	301
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	3 cut(s)	162, 317, 354
HphI	GGTGA	4 cut(s)	91, 287, 406, 479
Hpy166II	GTNNAC	3 cut(s)	178, 574, 606
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	3 cut(s)	178, 574, 606
Hpy99I	CGWCG	6 cut(s)	62, 80, 116, 119, 155, 179
HpyAV	CCTTC	2 cut(s)	10, 450
HpyCH4III	ACNGT	4 cut(s)	112, 226, 377, 389
HpyCH4IV	ACGT	6 cut(s)	57, 78, 186, 342, 401, 589
HpyCH4V	TGCA	3 cut(s)	236, 385, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 68, 135, 514
HpyF3I	CTNAG	2 cut(s)	600, 612
HpySE526I	ACGT	6 cut(s)	57, 78, 186, 342, 401, 589
Hsp92I	GRCGYC	3 cut(s)	45, 78, 165
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KspAI	GTTAAC	1 cut(s)	606
LmnI	GCTCC	1 cut(s)	90
LweI	GCATC	3 cut(s)	17, 94, 575
MaeI	CTAG	2 cut(s)	411, 486
MaeII	ACGT	6 cut(s)	57, 78, 186, 342, 401, 589
MaeIII	GTNAC	3 cut(s)	275, 394, 488
MbiI	CCGCTC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	3 cut(s)	250, 430, 532
MluNI	TGGCCA	1 cut(s)	425
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	3 cut(s)	140, 522, 577
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	2 cut(s)	312, 605
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	162, 317, 354
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	59, 68, 135, 514
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	162
NlaIV	GGNNCC	3 cut(s)	46, 124, 352
NmeAIII	GCCGAG	3 cut(s)	311, 327, 607
NmuCI	GTSAC	2 cut(s)	275, 394
NspV	TTCGAA	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 183, 533
PkrI	GCNGC	3 cut(s)	44, 49, 52
PleI	GAGTC	1 cut(s)	295
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	46, 124, 352
PspPI	GGNCC	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	569
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	4 cut(s)	26, 345, 374, 619
RsaNI	GTAC	4 cut(s)	25, 344, 373, 618
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	312, 605
SatI	GCNGC	3 cut(s)	43, 48, 51
Sau96I	GGNCC	1 cut(s)	122
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	17, 94, 575
SfoI	GGCGCC	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	250, 430, 532
SsiI	CCGC	3 cut(s)	42, 48, 51
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	2 cut(s)	411, 486
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	112, 226, 377, 389
TaiI	ACGT	6 cut(s)	60, 81, 189, 345, 404, 592
TaqI	TCGA	7 cut(s)	153, 177, 405, 452, 500, 527, 536
TasI	AATT	3 cut(s)	250, 430, 532
TatI	WGTACW	2 cut(s)	372, 617
TauI	GCSGC	3 cut(s)	45, 50, 53
Tru1I	TTAA	2 cut(s)	312, 605
Tru9I	TTAA	2 cut(s)	312, 605
TseFI	GTSAC	2 cut(s)	275, 394
Tsp45I	GTSAC	2 cut(s)	275, 394
TspDTI	ATGAA	3 cut(s)	17, 160, 233
XapI	RAATTY	3 cut(s)	250, 430, 532
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	411, 486
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.