Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006707

Physical Location & Seq

Genomic Coordinates Forward (+)

64346196 .. 64348870

Gene Structure 2675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG419100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACGATGAAGGCATCTTTGAAGGGTAGGTACGACACAGACAAGAGCGGCGCCGCCGCTAACGTCGCCGTTTTCGCCAGCGACGTCAAGCTCCGAGCTTCTCTCACCGATGCCACCGTCGTCGGTGGCCCCAGCCTCAACGGCTTGGTTCTCGCCGTCGAAAAACCCGGCGTCTTCATCGTCGACTACAACGTCCCCAAAAAGGACTTTAGGTTTCAGTTTATGAACACAATTAGGGTTGCAGAAAAGCCCTTGAATTTGACTTACATTCACAGCAAAGGTGACAACAGGACTATTTTGGACGGGACTCTGGTGCTTAATCCGGCCAACAAGGTCTCGGCCAATCACGTACTCGGTACCGGAAATGGGAAGCTCAAGTACAGTTATCTGCACGGTGGGGTGACCACGTTCGAGCCTAGCTATGATGTGGCCAAGAATTCGTGGGATTTTGCGGTTTCGAGGAGGGTTTATGGTGATGATGTGTTCAGGGCTAGTTACCAGACTTCGAGCAAGCTCTTGGGGCTGGAATGGTCGAGGAATTCGAAAGTGAATGGCTCTTTCAAGGTAATTGAATTTTGTTGTTTGTATTTAAATTTGCTATCTATAATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005261 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015288 GO:0015318 GO:0016020 GO:0016021 GO:0019867 GO:0022803 GO:0022829 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032879 GO:0032991 GO:0034220 GO:0034425 GO:0034426 GO:0034762 GO:0034765 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046930 GO:0050789 GO:0051049 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0098588 GO:0098655 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.37

Weight (kDa)

9.45

Isoelectric Point (pI)

13.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45170 AT1G45170 AT5G42960
fragaria_vesca	FvH4_2g39980
malus_domestica	MD01G1018700.v1.1 MD08G1033600.v1.1 MD15G1030300.v1.1
prunus_persica	Prupe.1G381300_v2.0.a1
pyrus_communis	pycom08g02690 pycom15g02660
rosa_chinensis	RchiOBHm_Chr6g0300771
rosa_laevigata	RLG00000001484 RLG00000011303
rosa_multiflora	Rmu_sc0028577.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352990 Rroxscaffold_7G00167430 Rroxscaffold_7G00213200
rosa_rugosa	Rorug06G0299100
rosa_samantha	Rh1CG245300 Rh2BG493100 Rh5AG065000 Rh6AG411900 Rh6BG133300 Rh6BG419100 Rh6CG426600
rosa_wichuraiana	Rw7G034350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AatII	GACGTC	1 cut(s)	87
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	50, 356
AccBSI	CCGCTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	4 cut(s)	48, 54, 57, 452
AcoI	YGGCCR	3 cut(s)	324, 339, 429
AcsI	RAATTY	5 cut(s)	256, 436, 538, 572, 592
AcyI	GRCGYC	3 cut(s)	51, 84, 171
AfaI	GTAC	4 cut(s)	32, 351, 358, 380
AfiI	CCNNNNNNNGG	2 cut(s)	202, 366
AgsI	TTSAA	4 cut(s)	22, 256, 562, 572
AluBI	AGCT	5 cut(s)	91, 98, 373, 420, 514
AluI	AGCT	5 cut(s)	91, 98, 373, 420, 514
Alw26I	GTCTC	1 cut(s)	340
AoxI	GGCC	4 cut(s)	127, 324, 339, 429
ApoI	RAATTY	5 cut(s)	256, 436, 538, 572, 592
Asp718I	GGTACC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	4 cut(s)	97, 293, 412, 485
AsuII	TTCGAA	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	50, 356
BarI	GAAGNNNNNNTAC	4 cut(s)	14, 46, 362, 394
BbsI	GAAGAC	1 cut(s)	166
BceAI	ACGGC	3 cut(s)	53, 140, 157
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	2 cut(s)	417, 492
BfoI	RGCGCY	1 cut(s)	54
BglI	GCCNNNNNGGC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	49, 54, 57
BlsI	GCNGC	3 cut(s)	50, 55, 58
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	52, 130, 358
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	23, 100
BpiI	GAAGAC	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	3 cut(s)	51, 84, 171
BsaI	GGTCTC	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 366
BseLI	CCNNNNNNNGG	2 cut(s)	202, 366
BseRI	GAGGAG	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	374
BshFI	GGCC	4 cut(s)	129, 326, 341, 431
BshNI	GGYRCC	2 cut(s)	50, 356
BsiSI	CCGG	3 cut(s)	168, 323, 360
BslFI	GGGAC	2 cut(s)	179, 319
BslI	CCNNNNNNNGG	2 cut(s)	202, 366
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	179, 319
BsnI	GGCC	4 cut(s)	129, 326, 341, 431
Bso31I	GGTCTC	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	542
BspACI	CCGC	4 cut(s)	48, 54, 57, 452
BspANI	GGCC	4 cut(s)	129, 326, 341, 431
BspLI	GGNNCC	3 cut(s)	52, 130, 358
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	2 cut(s)	50, 356
BspTNI	GGTCTC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	48
BssNI	GRCGYC	3 cut(s)	51, 84, 171
Bst4CI	ACNGT	3 cut(s)	118, 383, 395
BstACI	GRCGYC	3 cut(s)	51, 84, 171
BstBAI	YACGTR	1 cut(s)	349
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	79, 512
BstEII	GGTNACC	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 74, 141, 520
BstPI	GGTNACC	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	129, 326, 341, 431
Cac8I	GCNNGC	2 cut(s)	79, 512
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	4 cut(s)	31, 350, 357, 379
CviQI	GTAC	4 cut(s)	31, 350, 357, 379
DinI	GGCGCC	1 cut(s)	52
DraI	TTTAAA	1 cut(s)	591
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	3 cut(s)	324, 339, 429
Eco31I	GGTCTC	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	400
EcoO65I	GGTNACC	1 cut(s)	400
EcoRI	GAATTC	2 cut(s)	436, 538
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaiI	YATR	4 cut(s)	224, 423, 471, 605
FaqI	GGGAC	2 cut(s)	179, 319
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	49, 54, 57
Fsp4HI	GCNGC	3 cut(s)	49, 54, 57
FspBI	CTAG	2 cut(s)	417, 492
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	49, 54, 57
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	129, 326, 341, 431
HapII	CCGG	3 cut(s)	168, 323, 360
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	3 cut(s)	51, 84, 171
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	3 cut(s)	168, 323, 360
HphI	GGTGA	4 cut(s)	97, 293, 412, 485
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	6 cut(s)	68, 86, 122, 125, 161, 185
HpyAV	CCTTC	2 cut(s)	4, 16
HpyCH4III	ACNGT	3 cut(s)	118, 383, 395
HpyCH4IV	ACGT	5 cut(s)	63, 84, 192, 348, 407
HpyCH4V	TGCA	2 cut(s)	242, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 74, 141, 520
HpySE526I	ACGT	5 cut(s)	63, 84, 192, 348, 407
Hsp92I	GRCGYC	3 cut(s)	51, 84, 171
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	96
LweI	GCATC	2 cut(s)	23, 100
MaeI	CTAG	2 cut(s)	417, 492
MaeII	ACGT	5 cut(s)	63, 84, 192, 348, 407
MaeIII	GTNAC	3 cut(s)	281, 400, 494
MbiI	CCGCTC	1 cut(s)	48
MboII	GAAGA	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	431
MluCI	AATT	8 cut(s)	231, 256, 436, 538, 567, 572, 592, 606
MluNI	TGGCCA	1 cut(s)	431
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	4 cut(s)	146, 453, 456, 528
Mox20I	TGGCCA	1 cut(s)	431
MscI	TGGCCA	1 cut(s)	431
MseI	TTAA	2 cut(s)	318, 590
Msp20I	TGGCCA	1 cut(s)	431
MspI	CCGG	3 cut(s)	168, 323, 360
MspR9I	CCNGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	65, 74, 141, 520
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	168
NlaIV	GGNNCC	3 cut(s)	52, 130, 358
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	281, 400
NspV	TTCGAA	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 189, 539
PkrI	GCNGC	3 cut(s)	50, 55, 58
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	3 cut(s)	52, 130, 358
PspPI	GGNCC	1 cut(s)	128
RsaI	GTAC	4 cut(s)	32, 351, 358, 380
RsaNI	GTAC	4 cut(s)	31, 350, 357, 379
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	318, 590
SatI	GCNGC	3 cut(s)	49, 54, 57
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	168
SfaNI	GCATC	2 cut(s)	23, 100
SfoI	GGCGCC	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	542
SmiI	ATTTAAAT	1 cut(s)	591
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	8 cut(s)	231, 256, 436, 538, 567, 572, 592, 606
SsiI	CCGC	4 cut(s)	48, 54, 57, 452
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	417, 492
StyD4I	CCNGG	1 cut(s)	166
SwaI	ATTTAAAT	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	118, 383, 395
TaiI	ACGT	5 cut(s)	66, 87, 195, 351, 410
TaqI	TCGA	7 cut(s)	159, 183, 411, 458, 506, 533, 542
TasI	AATT	8 cut(s)	231, 256, 436, 538, 567, 572, 592, 606
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	3 cut(s)	51, 56, 59
Tru1I	TTAA	2 cut(s)	318, 590
Tru9I	TTAA	2 cut(s)	318, 590
TseFI	GTSAC	2 cut(s)	281, 400
Tsp45I	GTSAC	2 cut(s)	281, 400
TspDTI	ATGAA	3 cut(s)	23, 166, 239
XapI	RAATTY	5 cut(s)	256, 436, 538, 572, 592
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	2 cut(s)	417, 492
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.