AT1G47128

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
17282749 .. 17285749
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47128.1

Sequence Viewer

Length: 1389 bp
ATGGGGTTCCTTAAGCCAACCATGGCGATTCTTTTTCTAGCGATGGTCGCCGTTTCATCAGCCGTGGACATGTCAATCATCTCCTACGACGAGAAACATGGCGTCTCCACCACCGGTGGCCGTAGCGAAGCCGAGGTTATGAGTATCTACGAGGCATGGTTGGTGAAACACGGCAAGGCTCAGAGCCAGAACTCTCTTGTTGAGAAAGATCGACGGTTCGAGATCTTTAAAGACAATCTTCGTTTCGTCGATGAACATAACGAGAAGAATCTTAGTTATAGATTGGGTTTGACTCGTTTTGCGGATCTTACTAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGAGAAGAAAGGTGAGAGAAGGACTAGCCTACGGTACGAGGCTCGTGTCGGTGATGAGCTACCGGAGTCTATTGACTGGAGGAAGAAAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTGGTTGCGGGAGTTGTTGGGCGTTTTCAACCATTGGAGCAGTGGAGGGAATAAACCAGATCGTAACCGGAGACCTAATAACCTTGTCTGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTTGTAACGGAGGTCTTATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATACAGACAAAGATTATCCTTACAAGGGTGTTGATGGAACTTGTGACCAGATCAGGAAAAACGCTAAAGTTGTCACTATCGATTCATATGAGGATGTTCCAACTTACAGCGAGGAATCGTTGAAGAAAGCAGTTGCTCATCAACCCATTAGCATTGCCATTGAGGCTGGTGGTCGTGCGTTCCAGCTCTATGATTCGGGTATATTTGATGGAAGTTGTGGAACACAACTAGACCACGGAGTTGTGGCGGTTGGATACGGAACTGAGAACGGCAAAGATTACTGGATTGTGAGAAACTCATGGGGTAAAAGCTGGGGAGAGAGTGGATACCTAAGGATGGCGCGTAACATTGCGTCTTCATCAGGAAAATGTGGAATCGCGATTGAACCTTCATACCCGATAAAGAATGGCGAAAACCCGCCAAACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACCCAATGTGACAGTTACTACACTTGTCCTGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGCAAGTATTGCTTTGCTTGGGGATGTTGCCCACTAGAAGCAGCCACTTGCTGTGATGACAACTATAGTTGCTGCCCTCACGAGTACCCGGTTTGTGACCTTGATCAAGGAACCTGTTTATTGAGCAAGAACAGTCCATTTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAGGCAGAAAGAACATTGCCTAA

Protein Analysis

462

Amino Acids

50.97

Weight (kDa)

5.26

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 50 - 108 1e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 137 - 352 6.8e-86 Papain family cysteine protease
Granulin PF00396 386 - 433 3.9e-09 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012766)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 997, 1034
AciI CCGC 5 cut(s) 302, 474, 902, 1073, 1347
AclWI GGATC 2 cut(s) 312, 321
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 386, 1265
AfiI CCNNNNNNNGG 3 cut(s) 680, 991, 1082
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 69
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 3 cut(s) 495, 778, 1040
AluBI AGCT 4 cut(s) 344, 409, 841, 966
AluI AGCT 4 cut(s) 344, 409, 841, 966
Alw26I GTCTC 2 cut(s) 109, 531
AlwI GGATC 2 cut(s) 312, 321
Ama87I CYCGRG 1 cut(s) 1081
AoxI GGCC 2 cut(s) 118, 1329
ApeKI GCWGC 2 cut(s) 1220, 1251
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AsiGI ACCGGT 1 cut(s) 113
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 1 cut(s) 1085
AsuC2I CCSGG 3 cut(s) 1082, 1083, 1268
AsuHPI GGTGA 4 cut(s) 175, 374, 413, 1083
AvaI CYCGRG 1 cut(s) 1081
AvaII GGWCC 1 cut(s) 1085
AxyI CCTNAGG 1 cut(s) 986
BauI CACGAG 2 cut(s) 393, 1259
BbsI GAAGAC 1 cut(s) 1002
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 1232, 1238
BccI CCATC 7 cut(s) 37, 343, 683, 857, 985, 1105, 1112
BceAI ACGGC 6 cut(s) 35, 47, 105, 187, 428, 940
BciVI GTATCC 2 cut(s) 902, 974
BclI TGATCA 1 cut(s) 1282
BcnI CCSGG 3 cut(s) 1082, 1083, 1268
BcoDI GTCTC 2 cut(s) 109, 531
BfaI CTAG 4 cut(s) 38, 375, 884, 1214
BfmI CTRYAG 1 cut(s) 1243
BfrI CTTAAG 1 cut(s) 11
BfuI GTATCC 2 cut(s) 902, 974
BglI GCCNNNNNGGC 1 cut(s) 818
BglII AGATCT 1 cut(s) 222
BisI GCNGC 2 cut(s) 1221, 1252
BlsI GCNGC 2 cut(s) 1222, 1253
Bme1390I CCNGG 3 cut(s) 1082, 1083, 1268
Bme18I GGWCC 1 cut(s) 1085
BmeT110I CYCGRG 1 cut(s) 1081
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 4 cut(s) 8, 442, 1086, 1291
BmrFI CCNGG 3 cut(s) 1082, 1083, 1268
BpiI GAAGAC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 448
Bpu10I CCTNAGC 1 cut(s) 450
BpuMI CCSGG 3 cut(s) 1082, 1083, 1268
Bsa29I ATCGAT 2 cut(s) 654, 735
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 6 cut(s) 21, 63, 132, 444, 889, 1081
BsaWI WCCGGW 3 cut(s) 113, 412, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 680, 991, 1082
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 431, 941
Bse21I CCTNAGG 1 cut(s) 986
Bse3DI GCAATG 3 cut(s) 807, 1002, 1380
BseCI ATCGAT 2 cut(s) 654, 735
BseDI CCNNGG 6 cut(s) 21, 63, 132, 444, 889, 1081
BseGI GGATG 3 cut(s) 754, 996, 1208
BseLI CCNNNNNNNGG 3 cut(s) 680, 991, 1082
BseMI GCAATG 3 cut(s) 807, 1002, 1380
BseMII CTCAG 4 cut(s) 194, 441, 909, 1137
BseNI ACTGG 2 cut(s) 431, 941
BseXI GCAGC 2 cut(s) 1232, 1238
BseYI CCCAGC 1 cut(s) 966
Bsh1236I CGCG 2 cut(s) 997, 1034
BshFI GGCC 2 cut(s) 120, 1331
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 2 cut(s) 654, 735
BsiHKCI CYCGRG 1 cut(s) 1081
BsiSI CCGG 5 cut(s) 114, 413, 534, 1082, 1268
BslFI GGGAC 1 cut(s) 1098
BslI CCNNNNNNNGG 3 cut(s) 680, 991, 1082
BsmAI GTCTC 2 cut(s) 109, 531
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 1098
BsnI GGCC 2 cut(s) 120, 1331
Bso31I GGTCTC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 1081
Bsp143I GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
Bsp19I CCATGG 1 cut(s) 21
Bsp68I TCGCGA 1 cut(s) 1034
BspACI CCGC 5 cut(s) 302, 474, 902, 1073, 1347
BspANI GGCC 2 cut(s) 120, 1331
BspCNI CTCAG 4 cut(s) 193, 442, 910, 1138
BspDI ATCGAT 2 cut(s) 654, 735
BspFNI CGCG 2 cut(s) 997, 1034
BspLI GGNNCC 4 cut(s) 8, 442, 1086, 1291
BspPI GGATC 2 cut(s) 312, 321
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 3 cut(s) 807, 1002, 1380
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 2 cut(s) 431, 941
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 6 cut(s) 21, 63, 132, 444, 889, 1081
BssMI GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 2 cut(s) 393, 1259
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 2 cut(s) 393, 1259
Bst4CI ACNGT 4 cut(s) 216, 384, 1130, 1313
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 1188
BstDEI CTNAG 7 cut(s) 180, 272, 345, 450, 918, 986, 1146
BstDSI CCRYGG 4 cut(s) 21, 63, 444, 889
BstF5I GGATG 3 cut(s) 754, 996, 1208
BstFNI CGCG 2 cut(s) 997, 1034
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 8 cut(s) 211, 225, 307, 329, 463, 528, 708, 1285
BstMAI GTCTC 2 cut(s) 109, 531
BstMBI GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
BstMWI GCNNNNNNNGC 3 cut(s) 47, 818, 1188
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 1080, 1081, 1266
BstSFI CTRYAG 1 cut(s) 1243
BstUI CGCG 2 cut(s) 997, 1034
BstV1I GCAGC 2 cut(s) 1232, 1238
BstV2I GAAGAC 1 cut(s) 1002
BstX2I RGATCY 3 cut(s) 222, 304, 326
BstYI RGATCY 3 cut(s) 222, 304, 326
Bsu15I ATCGAT 2 cut(s) 654, 735
Bsu36I CCTNAGG 1 cut(s) 986
BsuI GTATCC 2 cut(s) 902, 974
BsuRI GGCC 2 cut(s) 120, 1331
BsuTUI ATCGAT 2 cut(s) 654, 735
BtgI CCRYGG 4 cut(s) 21, 63, 444, 889
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 3 cut(s) 754, 996, 1208
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
BtuMI TCGCGA 1 cut(s) 1034
CfoI GCGC 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 1085
Cfr9I CCCGGG 1 cut(s) 1081
ClaI ATCGAT 2 cut(s) 654, 735
CseI GACGC 2 cut(s) 91, 996
Csp6I GTAC 2 cut(s) 385, 1264
CspAI ACCGGT 1 cut(s) 113
CspCI CAANNNNNGTGG 2 cut(s) 628, 663
CviAII CATG 5 cut(s) 22, 70, 98, 156, 954
CviQI GTAC 2 cut(s) 385, 1264
DdeI CTNAG 7 cut(s) 180, 272, 345, 450, 918, 986, 1146
DpnI GATC 8 cut(s) 210, 224, 306, 328, 462, 527, 707, 1284
DpnII GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 1331
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 1085
Eco81I CCTNAGG 1 cut(s) 986
Eco88I CYCGRG 1 cut(s) 1081
EcoO109I RGGNCCY 1 cut(s) 1085
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 5 cut(s) 25, 73, 101, 159, 957
FalI AAGNNNNNCTT 4 cut(s) 222, 254, 1175, 1207
FaqI GGGAC 1 cut(s) 1098
FatI CATG 5 cut(s) 21, 69, 97, 155, 953
FauI CCCGC 3 cut(s) 467, 1080, 1354
FauNDI CATATG 1 cut(s) 742
FbaI TGATCA 1 cut(s) 1282
Fnu4HI GCNGC 2 cut(s) 1221, 1252
FokI GGATG 3 cut(s) 761, 1003, 1215
Fsp4HI GCNGC 2 cut(s) 1221, 1252
FspBI CTAG 4 cut(s) 38, 375, 884, 1214
GlaI GCGC 1 cut(s) 996
GluI GCNGC 2 cut(s) 1221, 1252
GsaI CCCAGC 1 cut(s) 970
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 120, 1331
HapII CCGG 5 cut(s) 114, 413, 534, 1082, 1268
HgaI GACGC 2 cut(s) 91, 996
HhaI GCGC 1 cut(s) 997
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 5 cut(s) 25, 73, 101, 159, 957
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HinfI GANTC 9 cut(s) 28, 268, 292, 416, 651, 737, 770, 848, 1029
HpaII CCGG 5 cut(s) 114, 413, 534, 1082, 1268
HphI GGTGA 4 cut(s) 175, 374, 413, 1083
Hpy166II GTNNAC 2 cut(s) 67, 1343
Hpy188I TCNGA 2 cut(s) 183, 556
Hpy188III TCNNGA 7 cut(s) 220, 640, 709, 1017, 1033, 1145, 1259
Hpy8I GTNNAC 2 cut(s) 67, 1343
Hpy99I CGWCG 3 cut(s) 92, 216, 251
HpyAV CCTTC 4 cut(s) 363, 587, 1053, 1098
HpyCH4III ACNGT 4 cut(s) 216, 384, 1130, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 818, 1188
HpyF3I CTNAG 7 cut(s) 180, 272, 345, 450, 918, 986, 1146
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 5 cut(s) 25, 73, 101, 159, 957
HspAI GCGC 1 cut(s) 995
Ksp22I TGATCA 1 cut(s) 1282
Kzo9I GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
LmnI GCTCC 3 cut(s) 341, 440, 503
Lsp1109I GCAGC 2 cut(s) 1232, 1238
MaeI CTAG 4 cut(s) 38, 375, 884, 1214
MalI GATC 8 cut(s) 210, 224, 306, 328, 462, 527, 707, 1284
MboI GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
MboII GAAGA 6 cut(s) 230, 277, 367, 445, 790, 1002
MflI RGATCY 3 cut(s) 222, 304, 326
MlyI GAGTC 2 cut(s) 286, 425
MmeI TCCRAC 3 cut(s) 779, 886, 1139
MseI TTAA 4 cut(s) 12, 228, 1326, 1334
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 5 cut(s) 114, 413, 534, 1082, 1268
MspR9I CCNGG 3 cut(s) 1082, 1083, 1268
MvnI CGCG 2 cut(s) 997, 1034
MwoI GCNNNNNNNGC 3 cut(s) 47, 818, 1188
NciI CCSGG 3 cut(s) 1082, 1083, 1268
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 742
NdeII GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
NlaIII CATG 5 cut(s) 25, 73, 101, 159, 957
NlaIV GGNNCC 4 cut(s) 8, 442, 1086, 1291
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 6 cut(s) 575, 698, 727, 1124, 1274, 1362
NruI TCGCGA 1 cut(s) 1034
NspI RCATGY 1 cut(s) 73
PceI AGGCCT 1 cut(s) 1331
PciI ACATGT 1 cut(s) 69
PfeI GAWTC 7 cut(s) 28, 268, 651, 737, 770, 848, 1029
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 2 cut(s) 1222, 1253
PleI GAGTC 2 cut(s) 286, 424
PpsI GAGTC 2 cut(s) 286, 424
PpuMI RGGWCCY 1 cut(s) 1085
PscI ACATGT 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 1085
PspFI CCCAGC 1 cut(s) 966
PspN4I GGNNCC 4 cut(s) 8, 442, 1086, 1291
PspPI GGNCC 1 cut(s) 1085
PspPPI RGGWCCY 1 cut(s) 1085
PsuI RGATCY 3 cut(s) 222, 304, 326
RruI TCGCGA 1 cut(s) 1034
RsaI GTAC 2 cut(s) 386, 1265
RsaNI GTAC 2 cut(s) 385, 1264
SaqAI TTAA 4 cut(s) 12, 228, 1326, 1334
SatI GCNGC 2 cut(s) 1221, 1252
Sau3AI GATC 8 cut(s) 208, 222, 304, 326, 460, 525, 705, 1282
Sau96I GGNCC 1 cut(s) 1085
SchI GAGTC 2 cut(s) 286, 425
ScrFI CCNGG 3 cut(s) 1082, 1083, 1268
SfcI CTRYAG 1 cut(s) 1243
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 1 cut(s) 1085
SmaI CCCGGG 1 cut(s) 1083
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SseBI AGGCCT 1 cut(s) 1331
SsiI CCGC 5 cut(s) 302, 474, 902, 1073, 1347
SspMI CTAG 4 cut(s) 38, 375, 884, 1214
StuI AGGCCT 1 cut(s) 1331
StyD4I CCNGG 3 cut(s) 1080, 1081, 1266
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 4 cut(s) 216, 384, 1130, 1313
TaqI TCGA 6 cut(s) 211, 219, 249, 570, 654, 735
TfiI GAWTC 7 cut(s) 28, 268, 651, 737, 770, 848, 1029
Tru1I TTAA 4 cut(s) 12, 228, 1326, 1334
Tru9I TTAA 4 cut(s) 12, 228, 1326, 1334
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 6 cut(s) 575, 698, 727, 1124, 1274, 1362
TseI GCWGC 2 cut(s) 1220, 1251
Tsp45I GTSAC 6 cut(s) 575, 698, 727, 1124, 1274, 1362
TspDTI ATGAA 7 cut(s) 45, 267, 573, 622, 729, 1002, 1035
TspGWI ACGGA 3 cut(s) 618, 906, 927
TspMI CCCGGG 1 cut(s) 1081
TspRI CASTG 1 cut(s) 513
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 1085
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmaI CCCGGG 1 cut(s) 1081
XspI CTAG 4 cut(s) 38, 375, 884, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.