Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012766

Physical Location & Seq

Genomic Coordinates Forward (+)

64348582 .. 64351576

Gene Structure 2995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG478500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGGTCCGTACCGATCATCATCATCGCCGATCATGGCGATCCTCTTCCTCGCCATGTTCGCCTTGTCCTCCGCCGCCGACGACATGTCGATCATCGCCTACGACAACAGCCACACCTCCTCTGCCGGCTGGAGGACCGACGAGGAGGTGATGTCACTGTACGAGGGGTGGTTGGCCAAGCACGGCAAGTCCTACAACGGCTTGGGAGAGAAGGAGAAGCGCTTCCAGATCTTCAAAGACAACCTCAGGTTCATCGACGACCACAACGCTCTCAACCTCAGCTACAAGCTCGGTCTGACTAAGTTCGCCGATCTGTCCAACGAGGAGTACCGGTCAACGTACCTAGGGACCAAGCCCCGCGCTCTGAATAGGCTCTCCAAGACAAAGAGCGACCGGTACGCGCCACGTGTCGGCGATCAGTTGCCTGACGCTGTTGATTGGAGGAAGGAAGGCGTCGTCAACCCTGTCAAAGACCAAGGCCAGTGTGGGAGTTGCTGGGCATTCTCAACAATCTCTGCTGTGGAAGGAATCAATAAGATAGTGACTGGCGATCTTATCTCACTATCTGAGCAGGAGTTGGTTGATTGTGATAAAACTTATAATGAAGGATGCAATGGAGGGCTCATGGACTATGCCTTCGAGTTCATCATTAACAATGGTGGCATTGACAGTGAAGATGACTATCCTTACAAAGGATATGATTCCACATGTGACACCTACAGGAAAAATGCCAAGGTGGTTTCAATTGATTCTTATGAAGATGTTCCCACATACGATGAGCAAGCGTTGCAAAAGGCTGTTGCCAATCAGCCAATTGCTGTTGCTATTGAAGGAGGAGGCAGGGAATTCCAGTTATATTCATCAGGTGTGTTTACTGGACGGTGTGGGACAGCACTAGACCATGGTGTTACTGTTGTTGGATACGGCACAGACCATGGCGTTGATTACTGGATTGTGAGGAATTCATGGGGTGCCAGCTGGGGAGAGGCAGGGTACATCAGAATGGAGCGTAATCTGGGTAACACCGCAACCGGGAAATGTGGAATTGCAATGGAGGCTTCTTACCCCGTCAAGGTAGGACAGAATCCCCCTAACCCTGGTCCATCTCCTCCATCTCCGATAAAACCTCCTCAGGTTTGTGACAACTACTTCTCCTGCCCCGAGAGCAACACCTGCTGCTGTATCTATCAGTATGCAAACTACTGCTTTGCTTGGGGATGCTGTCCTCTTGAAGGTGCCACCTGCTGTGATGACCATTACAGTTGCTGCCCATCAGACTACCCCGTCTGCAATGTCAATGCAGGAACCTGTCAGCTGGTCAGATCAACTAAATTTTACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010494 GO:0016787 GO:0019538 GO:0030054 GO:0030163 GO:0032991 GO:0035770 GO:0036464 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

447

Amino Acids

49.2

Weight (kDa)

4.88

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	54 - 110	1e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	141 - 357	1.7e-85	Papain family cysteine protease
Granulin	PF00396	391 - 438	2.3e-08	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47128 AT5G43060
fragaria_vesca	FvH4_2g33910
malus_domestica	MD08G1065500.v1.1 MD08G1093900.v1.1 MD15G1078300.v1.1
prunus_persica	Prupe.1G431000_v2.0.a1
pyrus_communis	pycom08g07660 pycom15g07310
rosa_chinensis	RchiOBHm_Chr6g0308501
rosa_laevigata	RLG00000010637
rosa_multiflora	Rmu_sc0020439.1_g000004
rosa_roxburghii	Rroxscaffold_7G00160070
rosa_rugosa	Rorug06G0367300
rosa_samantha	Rh6AG477200 Rh6BG487400 Rh6DG478500
rosa_wichuraiana	Rw6G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AarI	CACCTGC	2 cut(s)	1181, 1250
AasI	GACNNNNNNGTC	1 cut(s)	1283
Acc36I	ACCTGC	2 cut(s)	1181, 1250
AccB1I	GGYRCC	2 cut(s)	971, 1235
AccII	CGCG	2 cut(s)	360, 401
AciI	CCGC	4 cut(s)	72, 75, 358, 1026
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	845, 961, 1331
AcvI	CACGTG	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	6 cut(s)	11, 161, 329, 341, 398, 995
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	7 cut(s)	132, 410, 692, 1032, 1072, 1097, 1232
AflIII	ACRYGT	3 cut(s)	84, 406, 707
AgeI	ACCGGT	2 cut(s)	330, 393
AgsI	TTSAA	4 cut(s)	235, 744, 830, 1232
AhdI	GACNNNNNGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	1096
AluBI	AGCT	4 cut(s)	282, 289, 978, 1315
AluI	AGCT	4 cut(s)	282, 289, 978, 1315
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	1266
Ama87I	CYCGRG	1 cut(s)	1160
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	2 cut(s)	174, 478
ApeKI	GCWGC	2 cut(s)	1176, 1266
ApoI	RAATTY	3 cut(s)	845, 961, 1331
ArsI	GACNNNNNNTTYG	2 cut(s)	620, 652
AsiGI	ACCGGT	2 cut(s)	330, 393
Asp700I	GAANNNNTTC	2 cut(s)	221, 762
AspA2I	CCTAGG	1 cut(s)	343
AspLEI	GCGC	3 cut(s)	222, 362, 403
AspS9I	GGNCC	4 cut(s)	5, 135, 348, 1100
AsuC2I	CCSGG	1 cut(s)	1033
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	1160
AvaII	GGWCC	4 cut(s)	5, 135, 348, 1100
AvrII	CCTAGG	1 cut(s)	343
AxyI	CCTNAGG	2 cut(s)	245, 1131
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	971, 1235
BanII	GRGCYC	1 cut(s)	624
BbrPI	CACGTG	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	1163, 1253
BccI	CCATC	3 cut(s)	1111, 1120, 1279
BceAI	ACGGC	3 cut(s)	199, 214, 940
BciT130I	CCWGG	1 cut(s)	1098
BciVI	GTATCC	1 cut(s)	914
BcnI	CCSGG	1 cut(s)	1033
BfaI	CTAG	2 cut(s)	344, 896
BfmI	CTRYAG	1 cut(s)	718
BfoI	RGCGCY	1 cut(s)	223
BfuAI	ACCTGC	2 cut(s)	1181, 1250
BfuI	GTATCC	1 cut(s)	914
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	3 cut(s)	75, 1177, 1267
BlnI	CCTAGG	1 cut(s)	343
BlsI	GCNGC	3 cut(s)	76, 1178, 1268
Bme1390I	CCNGG	2 cut(s)	1033, 1098
Bme18I	GGWCC	4 cut(s)	5, 135, 348, 1100
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	1160
BmgT120I	GGNCC	4 cut(s)	5, 135, 348, 1100
BmiI	GGNNCC	5 cut(s)	6, 349, 973, 1237, 1306
BmrFI	CCNGG	2 cut(s)	1033, 1098
BmsI	GCATC	2 cut(s)	599, 1208
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	1033
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	2 cut(s)	19, 681
BsaHI	GRCGYC	1 cut(s)	453
BsaJI	CCNNGG	6 cut(s)	343, 475, 732, 901, 934, 1096
BsaWI	WCCGGW	2 cut(s)	330, 393
BsaXI	ACNNNNNCTCC	6 cut(s)	137, 167, 317, 347, 1136, 1166
Bsc4I	CCNNNNNNNGG	7 cut(s)	132, 410, 692, 1032, 1072, 1097, 1232
Bse118I	RCCGGY	3 cut(s)	125, 330, 393
Bse1I	ACTGG	5 cut(s)	481, 550, 850, 880, 953
Bse21I	CCTNAGG	2 cut(s)	245, 1131
Bse3DI	GCAATG	3 cut(s)	619, 1056, 1297
Bse8I	GATNNNNATC	2 cut(s)	19, 681
BseBI	CCWGG	1 cut(s)	1098
BseDI	CCNNGG	6 cut(s)	343, 475, 732, 901, 934, 1096
BseGI	GGATG	2 cut(s)	614, 1223
BseJI	GATNNNNATC	2 cut(s)	19, 681
BseLI	CCNNNNNNNGG	7 cut(s)	132, 410, 692, 1032, 1072, 1097, 1232
BseMI	GCAATG	3 cut(s)	619, 1056, 1297
BseMII	CTCAG	4 cut(s)	259, 292, 558, 1145
BseNI	ACTGG	5 cut(s)	481, 550, 850, 880, 953
BseRI	GAGGAG	6 cut(s)	109, 158, 338, 849, 1098, 1119
BseXI	GCAGC	2 cut(s)	1163, 1253
BseYI	CCCAGC	2 cut(s)	495, 978
Bsh1236I	CGCG	2 cut(s)	360, 401
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	176, 480
BshNI	GGYRCC	2 cut(s)	971, 1235
BshTI	ACCGGT	2 cut(s)	330, 393
BsiEI	CGRYCG	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	1160
BsiSI	CCGG	4 cut(s)	126, 331, 394, 1032
BslFI	GGGAC	2 cut(s)	361, 901
BslI	CCNNNNNNNGG	7 cut(s)	132, 410, 692, 1032, 1072, 1097, 1232
BsmFI	GGGAC	2 cut(s)	361, 901
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	176, 480
BsoBI	CYCGRG	1 cut(s)	1160
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
Bsp19I	CCATGG	2 cut(s)	901, 934
BspACI	CCGC	4 cut(s)	72, 75, 358, 1026
BspANI	GGCC	2 cut(s)	176, 480
BspCNI	CTCAG	4 cut(s)	258, 291, 559, 1144
BspFNI	CGCG	2 cut(s)	360, 401
BspLI	GGNNCC	5 cut(s)	6, 349, 973, 1237, 1306
BspMI	ACCTGC	2 cut(s)	1181, 1250
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	2 cut(s)	971, 1235
BsrDI	GCAATG	3 cut(s)	619, 1056, 1297
BsrFI	RCCGGY	3 cut(s)	125, 330, 393
BsrI	ACTGG	5 cut(s)	481, 550, 850, 880, 953
BssAI	RCCGGY	3 cut(s)	125, 330, 393
BssECI	CCNNGG	6 cut(s)	343, 475, 732, 901, 934, 1096
BssMI	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
BssNI	GRCGYC	1 cut(s)	453
BssT1I	CCWWGG	5 cut(s)	343, 475, 732, 901, 934
Bst2UI	CCWGG	1 cut(s)	1098
Bst4CI	ACNGT	5 cut(s)	159, 671, 882, 913, 1262
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	1 cut(s)	453
BstAPI	GCANNNNNTGC	2 cut(s)	787, 1173
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	127, 783, 976
BstDEI	CTNAG	5 cut(s)	245, 278, 300, 567, 1131
BstDSI	CCRYGG	2 cut(s)	901, 934
BstENI	CCTNNNNNAGG	2 cut(s)	690, 1230
BstF5I	GGATG	2 cut(s)	614, 1223
BstFNI	CGCG	2 cut(s)	360, 401
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	3 cut(s)	222, 362, 403
BstKTI	GATC	9 cut(s)	17, 33, 42, 93, 231, 313, 418, 553, 1325
BstMBI	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 787, 1055, 1164, 1173
BstNI	CCWGG	1 cut(s)	1098
BstNSI	RCATGY	2 cut(s)	88, 711
BstSCI	CCNGG	2 cut(s)	1031, 1096
BstSFI	CTRYAG	1 cut(s)	718
BstUI	CGCG	2 cut(s)	360, 401
BstV1I	GCAGC	2 cut(s)	1163, 1253
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu36I	CCTNAGG	2 cut(s)	245, 1131
BsuI	GTATCC	1 cut(s)	914
BsuRI	GGCC	2 cut(s)	176, 480
BtgI	CCRYGG	2 cut(s)	901, 934
BtgZI	GCGATG	2 cut(s)	9, 79
BtsCI	GGATG	2 cut(s)	614, 1223
BtsIMutI	CAGTG	3 cut(s)	155, 488, 676
BveI	ACCTGC	2 cut(s)	1181, 1250
Cac8I	GCNNGC	3 cut(s)	127, 783, 976
CaiI	CAGNNNCTG	1 cut(s)	1266
CfoI	GCGC	3 cut(s)	222, 362, 403
Cfr10I	RCCGGY	3 cut(s)	125, 330, 393
Cfr13I	GGNCC	4 cut(s)	5, 135, 348, 1100
CseI	GACGC	2 cut(s)	437, 442
Csp6I	GTAC	6 cut(s)	10, 160, 328, 340, 397, 994
CspAI	ACCGGT	2 cut(s)	330, 393
CviAII	CATG	8 cut(s)	34, 55, 85, 625, 708, 902, 935, 966
CviQI	GTAC	6 cut(s)	10, 160, 328, 340, 397, 994
DdeI	CTNAG	5 cut(s)	245, 278, 300, 567, 1131
DpnI	GATC	9 cut(s)	16, 32, 41, 92, 230, 312, 417, 552, 1324
DpnII	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
DrdI	GACNNNNNNGTC	1 cut(s)	1283
DriI	GACNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	1283
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	5 cut(s)	343, 475, 732, 901, 934
Eco24I	GRGCYC	1 cut(s)	624
Eco47I	GGWCC	4 cut(s)	5, 135, 348, 1100
Eco47III	AGCGCT	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	407
Eco81I	CCTNAGG	2 cut(s)	245, 1131
Eco88I	CYCGRG	1 cut(s)	1160
EcoNI	CCTNNNNNAGG	2 cut(s)	690, 1230
EcoRI	GAATTC	2 cut(s)	845, 961
EcoRII	CCWGG	1 cut(s)	1096
EcoT14I	CCWWGG	5 cut(s)	343, 475, 732, 901, 934
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	5 cut(s)	343, 475, 732, 901, 934
FaeI	CATG	8 cut(s)	37, 58, 88, 628, 711, 905, 938, 969
FaqI	GGGAC	2 cut(s)	361, 901
FatI	CATG	8 cut(s)	33, 54, 84, 624, 707, 901, 934, 965
FauI	CCCGC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	75, 1177, 1267
FokI	GGATG	2 cut(s)	621, 1230
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	75, 1177, 1267
FspBI	CTAG	2 cut(s)	344, 896
GlaI	GCGC	3 cut(s)	221, 361, 402
GluI	GCNGC	3 cut(s)	75, 1177, 1267
GsaI	CCCAGC	2 cut(s)	499, 982
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	176, 480
HapII	CCGG	4 cut(s)	126, 331, 394, 1032
HgaI	GACGC	2 cut(s)	437, 442
HhaI	GCGC	3 cut(s)	222, 362, 403
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	8 cut(s)	37, 58, 88, 628, 711, 905, 938, 969
Hin6I	GCGC	3 cut(s)	220, 360, 401
HinP1I	GCGC	3 cut(s)	220, 360, 401
HincII	GTYRAC	2 cut(s)	336, 460
HindII	GTYRAC	2 cut(s)	336, 460
HinfI	GANTC	4 cut(s)	528, 701, 749, 1084
HpaII	CCGG	4 cut(s)	126, 331, 394, 1032
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	336, 460, 873
Hpy188I	TCNGA	7 cut(s)	297, 366, 568, 1001, 1119, 1276, 1322
Hpy188III	TCNNGA	2 cut(s)	226, 1229
Hpy8I	GTNNAC	3 cut(s)	336, 460, 873
Hpy99I	CGWCG	4 cut(s)	83, 143, 260, 458
HpyAV	CCTTC	8 cut(s)	205, 439, 443, 518, 599, 646, 824, 1226
HpyCH4III	ACNGT	5 cut(s)	159, 671, 882, 913, 1262
HpyCH4IV	ACGT	2 cut(s)	338, 406
HpyCH4V	TGCA	6 cut(s)	612, 790, 1049, 1196, 1290, 1301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 787, 1055, 1164, 1173
HpyF3I	CTNAG	5 cut(s)	245, 278, 300, 567, 1131
HpySE526I	ACGT	2 cut(s)	338, 406
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	8 cut(s)	37, 58, 88, 628, 711, 905, 938, 969
HspAI	GCGC	3 cut(s)	220, 360, 401
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
LmnI	GCTCC	1 cut(s)	1006
Lsp1109I	GCAGC	2 cut(s)	1163, 1253
LweI	GCATC	2 cut(s)	599, 1208
MaeI	CTAG	2 cut(s)	344, 896
MaeII	ACGT	2 cut(s)	338, 406
MaeIII	GTNAC	6 cut(s)	153, 541, 710, 907, 1019, 1139
MalI	GATC	9 cut(s)	16, 32, 41, 92, 230, 312, 417, 552, 1324
MboI	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
MboII	GAAGA	4 cut(s)	37, 223, 686, 770
MfeI	CAATTG	2 cut(s)	744, 813
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	624
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	6 cut(s)	744, 813, 845, 961, 1044, 1331
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	342, 898
Mox20I	TGGCCA	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	2 cut(s)	221, 762
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	2 cut(s)	978, 1315
MspI	CCGG	4 cut(s)	126, 331, 394, 1032
MspR9I	CCNGG	2 cut(s)	1033, 1098
MunI	CAATTG	2 cut(s)	744, 813
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	1098
MvnI	CGCG	2 cut(s)	360, 401
MwoI	GCNNNNNNNGC	5 cut(s)	59, 787, 1055, 1164, 1173
NaeI	GCCGGC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	1033
NcoI	CCATGG	2 cut(s)	901, 934
NdeII	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	8 cut(s)	37, 58, 88, 628, 711, 905, 938, 969
NlaIV	GGNNCC	5 cut(s)	6, 349, 973, 1237, 1306
NmuCI	GTSAC	4 cut(s)	153, 541, 710, 1139
NspI	RCATGY	2 cut(s)	88, 711
PaqCI	CACCTGC	2 cut(s)	1181, 1250
PciI	ACATGT	2 cut(s)	84, 707
PctI	GAATGC	1 cut(s)	500
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	221, 762
PfeI	GAWTC	4 cut(s)	528, 701, 749, 1084
PinAI	ACCGGT	2 cut(s)	330, 393
PkrI	GCNGC	3 cut(s)	76, 1178, 1268
PmaCI	CACGTG	1 cut(s)	407
PmlI	CACGTG	1 cut(s)	407
Ppu21I	YACGTR	1 cut(s)	407
PscI	ACATGT	2 cut(s)	84, 707
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	1096
PspCI	CACGTG	1 cut(s)	407
PspFI	CCCAGC	2 cut(s)	495, 978
PspGI	CCWGG	1 cut(s)	1096
PspN4I	GGNNCC	5 cut(s)	6, 349, 973, 1237, 1306
PspPI	GGNCC	4 cut(s)	5, 135, 348, 1100
PstNI	CAGNNNCTG	1 cut(s)	1266
PsuI	RGATCY	1 cut(s)	228
PvuII	CAGCTG	2 cut(s)	978, 1315
RsaI	GTAC	6 cut(s)	11, 161, 329, 341, 398, 995
RsaNI	GTAC	6 cut(s)	10, 160, 328, 340, 397, 994
RseI	CAYNNNNRTG	1 cut(s)	1001
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	3 cut(s)	75, 1177, 1267
Sau3AI	GATC	9 cut(s)	14, 30, 39, 90, 228, 310, 415, 550, 1322
Sau96I	GGNCC	4 cut(s)	5, 135, 348, 1100
ScrFI	CCNGG	2 cut(s)	1033, 1098
SduI	GDGCHC	1 cut(s)	624
SfaNI	GCATC	2 cut(s)	599, 1208
SfcI	CTRYAG	1 cut(s)	718
SinI	GGWCC	4 cut(s)	5, 135, 348, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	1001
Sse9I	AATT	6 cut(s)	744, 813, 845, 961, 1044, 1331
SsiI	CCGC	4 cut(s)	72, 75, 358, 1026
SspMI	CTAG	2 cut(s)	344, 896
StyD4I	CCNGG	2 cut(s)	1031, 1096
StyI	CCWWGG	5 cut(s)	343, 475, 732, 901, 934
TaaI	ACNGT	5 cut(s)	159, 671, 882, 913, 1262
TaiI	ACGT	2 cut(s)	341, 409
TaqI	TCGA	3 cut(s)	89, 255, 639
TaqII	GACCGA	2 cut(s)	152, 281
TasI	AATT	6 cut(s)	744, 813, 845, 961, 1044, 1331
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	4 cut(s)	528, 701, 749, 1084
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	162, 488, 676
TseFI	GTSAC	4 cut(s)	153, 541, 710, 1139
TseI	GCWGC	2 cut(s)	1176, 1266
Tsp45I	GTSAC	4 cut(s)	153, 541, 710, 1139
TspDTI	ATGAA	6 cut(s)	241, 618, 634, 771, 849, 954
TspRI	CASTG	3 cut(s)	162, 488, 676
VpaK11BI	GGWCC	4 cut(s)	5, 135, 348, 1100
XagI	CCTNNNNNAGG	2 cut(s)	690, 1230
XapI	RAATTY	3 cut(s)	845, 961, 1331
XceI	RCATGY	2 cut(s)	88, 711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmaJI	CCTAGG	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	221, 762
XspI	CTAG	2 cut(s)	344, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.