AT5G43060

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17269310 .. 17272298
2989 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G43060.1

Sequence Viewer

Length: 1392 bp
ATGGGTTTCTTAAAGTTATCTCCAATGATCCTTCTCCTAGCAATGATCGGCGTTTCATATGCCATGGACATGTCAATCATCTCCTACGACGAAAACCACCACATCACCACCGAGACCAGCCGTAGCGACTCGGAGGTTGAGAGAATCTACGAAGCGTGGATGGTGGAACACGGGAAGAAGAAGATGAATCAAAACGGTCTTGGTGCAGAGAAAGATCAAAGATTCGAGATCTTTAAAGATAATCTTCGTTTCATCGATGAACATAACACCAAAAACCTCAGTTATAAACTTGGTTTAACCCGGTTTGCTGATTTAACCAATGAGGAGTACCGATCTATGTACCTTGGTGCTAAACCGACCAAGAGGGTTTTGAAAACCAGTGATCGGTATCAGGCGCGTGTTGGTGACGCGCTTCCTGATTCGGTTGACTGGAGAAAAGAAGGTGCCGTCGCTGATGTTAAAGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCAACTATTGGAGCAGTGGAAGGAATAAACAAGATTGTGACAGGAGATTTAATATCTTTGTCTGAACAAGAATTGGTTGATTGTGACACATCTTATAACCAAGGATGTAATGGTGGTTTAATGGACTATGCGTTTGAGTTTATTATCAAAAATGGTGGTATTGATACCGAAGCGGATTATCCTTACAAGGCTGCTGATGGTCGTTGTGACCAGAACAGGAAAAATGCTAAGGTTGTTACCATTGATTCATATGAAGATGTCCCTGAGAACAGCGAGGCGTCTCTAAAGAAAGCTTTGGCTCACCAGCCTATTAGTGTCGCCATTGAAGCGGGTGGTCGCGCTTTCCAGCTCTATTCTTCGGGTGTATTTGATGGACTTTGTGGGACGGAGTTAGACCACGGTGTTGTGGCTGTGGGTTATGGAACCGAGAACGGAAAGGACTACTGGATTGTGAGAAACTCATGGGGAAACAGATGGGGAGAGAGCGGATACATAAAGATGGCACGTAACATTGAAGCGCCAACAGGAAAGTGTGGAATCGCTATGGAGGCTTCGTATCCGATCAAGAAAGGTCAGAACCCACCAAACCCTGGCCCGTCACCACCATCTCCCATTAAGCCACCAACCACATGTGACAAGTACTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGTATGGTAAGTACTGCTTCGGATGGGGATGTTGCCCGCTCGAAGCTGCTACTTGCTGCGATGATAACTCAAGTTGCTGTCCTCATGAGTACCCGGTTTGTGACGTTAACCGCGGAACCTGTTTGATGAGCAAGAACAGTCCGTTTAGCGTGAAGGCTTTAAAGCGTACACCCGCAATACCGTTCTGGGCAAAGAGCAGAAAGCACATTGCGTAA

Protein Analysis

463

Amino Acids

51.2

Weight (kDa)

5.86

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 50 - 110 2.1e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 138 - 353 1.3e-88 Papain family cysteine protease
Granulin PF00396 387 - 434 6.3e-09 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012766)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 285, 591
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccBSI CCGCTC 2 cut(s) 981, 1216
AccII CGCG 4 cut(s) 397, 410, 834, 1290
AciI CCGC 7 cut(s) 668, 824, 981, 1214, 1288, 1290, 1350
AclWI GGATC 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 773
AfaI GTAC 6 cut(s) 329, 341, 1136, 1190, 1268, 1345
AfiI CCNNNNNNNGG 2 cut(s) 384, 1085
AflIII ACRYGT 2 cut(s) 69, 1124
AgsI TTSAA 3 cut(s) 373, 821, 1010
AjnI CCWGG 1 cut(s) 1084
AluBI AGCT 4 cut(s) 474, 788, 844, 1223
AluI AGCT 4 cut(s) 474, 788, 844, 1223
Alw26I GTCTC 3 cut(s) 107, 780, 1175
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 1087
ApeKI GCWGC 3 cut(s) 686, 1223, 1233
ArsI GACNNNNNNTTYG 2 cut(s) 611, 643
AspLEI GCGC 4 cut(s) 397, 412, 836, 1015
AspS9I GGNCC 1 cut(s) 1088
AsuC2I CCSGG 2 cut(s) 301, 1271
AsuHPI GGTGA 4 cut(s) 97, 416, 788, 1086
BanI GGYRCC 1 cut(s) 443
BbvI GCAGC 3 cut(s) 673, 1210, 1220
BccI CCATC 7 cut(s) 154, 686, 860, 963, 988, 1108, 1194
BceAI ACGGC 2 cut(s) 105, 431
BciT130I CCWGG 1 cut(s) 1086
BciVI GTATCC 2 cut(s) 977, 1062
BcnI CCSGG 2 cut(s) 301, 1271
BcoDI GTCTC 3 cut(s) 107, 780, 1175
BfaI CTAG 1 cut(s) 38
BfoI RGCGCY 1 cut(s) 1016
BfuI GTATCC 2 cut(s) 977, 1062
BglII AGATCT 1 cut(s) 228
BisI GCNGC 3 cut(s) 687, 1224, 1234
BlsI GCNGC 3 cut(s) 688, 1225, 1235
BmcAI AGTACT 2 cut(s) 1136, 1190
Bme1390I CCNGG 3 cut(s) 301, 1086, 1271
BmgT120I GGNCC 1 cut(s) 1088
BmiI GGNNCC 3 cut(s) 445, 919, 1294
BmrFI CCNGG 3 cut(s) 301, 1086, 1271
BpmI CTGGAG 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 1231
BpuMI CCSGG 2 cut(s) 301, 1271
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 1001
BsaBI GATNNNNATC 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 773
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 6 cut(s) 63, 343, 595, 892, 1084, 1288
BsaXI ACNNNNNCTCC 2 cut(s) 1034, 1064
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 1085
Bse1I ACTGG 3 cut(s) 378, 434, 944
Bse3DI GCAATG 2 cut(s) 48, 1383
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 1086
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 6 cut(s) 63, 343, 595, 892, 1084, 1288
BseGI GGATG 4 cut(s) 165, 605, 1205, 1211
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 384, 1085
BseMI GCAATG 2 cut(s) 48, 1383
BseMII CTCAG 3 cut(s) 292, 750, 1140
BseNI ACTGG 3 cut(s) 378, 434, 944
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 3 cut(s) 673, 1210, 1220
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 4 cut(s) 397, 410, 834, 1290
BshFI GGCC 1 cut(s) 1089
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 2 cut(s) 301, 1271
BslFI GGGAC 2 cut(s) 740, 892
BslI CCNNNNNNNGG 2 cut(s) 384, 1085
BsmAI GTCTC 3 cut(s) 107, 780, 1175
BsmBI CGTCTC 1 cut(s) 780
BsmFI GGGAC 2 cut(s) 740, 892
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 1 cut(s) 1089
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 7 cut(s) 668, 824, 981, 1214, 1288, 1290, 1350
BspANI GGCC 1 cut(s) 1089
BspCNI CTCAG 3 cut(s) 291, 751, 1141
BspDI ATCGAT 1 cut(s) 255
BspFNI CGCG 4 cut(s) 397, 410, 834, 1290
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 3 cut(s) 445, 919, 1294
BspPI GGATC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 107
BsrBI CCGCTC 2 cut(s) 981, 1216
BsrDI GCAATG 2 cut(s) 48, 1383
BsrI ACTGG 3 cut(s) 378, 434, 944
BssECI CCNNGG 6 cut(s) 63, 343, 595, 892, 1084, 1288
BssMI GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
BssNI GRCGYC 1 cut(s) 773
BssT1I CCWWGG 3 cut(s) 63, 343, 595
Bst2UI CCWGG 1 cut(s) 1086
Bst4CI ACNGT 4 cut(s) 197, 896, 1316, 1359
BstACI GRCGYC 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 1001
BstC8I GCNNGC 1 cut(s) 1214
BstDEI CTNAG 4 cut(s) 278, 723, 759, 1149
BstDSI CCRYGG 3 cut(s) 63, 892, 1288
BstF5I GGATG 4 cut(s) 165, 605, 1205, 1211
BstFNI CGCG 4 cut(s) 397, 410, 834, 1290
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 4 cut(s) 397, 412, 836, 1015
BstKTI GATC 8 cut(s) 30, 48, 217, 231, 335, 385, 466, 1059
BstMAI GTCTC 3 cut(s) 107, 780, 1175
BstMBI GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
BstMWI GCNNNNNNNGC 3 cut(s) 821, 1043, 1152
BstNI CCWGG 1 cut(s) 1086
BstNSI RCATGY 2 cut(s) 73, 1128
BstSCI CCNGG 3 cut(s) 299, 1084, 1269
BstUI CGCG 4 cut(s) 397, 410, 834, 1290
BstV1I GCAGC 3 cut(s) 673, 1210, 1220
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 2 cut(s) 977, 1062
BsuRI GGCC 1 cut(s) 1089
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 3 cut(s) 63, 892, 1288
BtgZI GCGATG 1 cut(s) 1251
BtsCI GGATG 4 cut(s) 165, 605, 1205, 1211
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 385, 516
Cac8I GCNNGC 1 cut(s) 1214
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 4 cut(s) 397, 412, 836, 1015
Cfr13I GGNCC 1 cut(s) 1088
Cfr42I CCGCGG 1 cut(s) 1291
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 2 cut(s) 416, 762
Csp6I GTAC 6 cut(s) 328, 340, 1135, 1189, 1267, 1344
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 5 cut(s) 64, 70, 957, 1125, 1262
CviQI GTAC 6 cut(s) 328, 340, 1135, 1189, 1267, 1344
DdeI CTNAG 4 cut(s) 278, 723, 759, 1149
DpnI GATC 8 cut(s) 29, 47, 216, 230, 334, 384, 465, 1058
DpnII GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
DraI TTTAAA 2 cut(s) 235, 1338
Eco130I CCWWGG 3 cut(s) 63, 343, 595
Eco31I GGTCTC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 1084
EcoT14I CCWWGG 3 cut(s) 63, 343, 595
ErhI CCWWGG 3 cut(s) 63, 343, 595
Esp3I CGTCTC 1 cut(s) 780
FaeI CATG 5 cut(s) 67, 73, 960, 1128, 1265
FalI AAGNNNNNCTT 4 cut(s) 228, 260, 1178, 1210
FaqI GGGAC 2 cut(s) 740, 892
FatI CATG 5 cut(s) 63, 69, 956, 1124, 1261
FauI CCCGC 3 cut(s) 817, 1221, 1357
FauNDI CATATG 2 cut(s) 58, 745
Fnu4HI GCNGC 3 cut(s) 687, 1224, 1234
FokI GGATG 4 cut(s) 172, 612, 1212, 1218
Fsp4HI GCNGC 3 cut(s) 687, 1224, 1234
FspBI CTAG 1 cut(s) 38
GlaI GCGC 4 cut(s) 396, 411, 835, 1014
GluI GCNGC 3 cut(s) 687, 1224, 1234
GsuI CTGGAG 1 cut(s) 451
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 1 cut(s) 1089
HapII CCGG 2 cut(s) 301, 1271
HgaI GACGC 2 cut(s) 416, 762
HhaI GCGC 4 cut(s) 397, 412, 836, 1015
Hin1I GRCGYC 1 cut(s) 773
Hin1II CATG 5 cut(s) 67, 73, 960, 1128, 1265
Hin6I GCGC 4 cut(s) 395, 410, 834, 1013
HinP1I GCGC 4 cut(s) 395, 410, 834, 1013
HincII GTYRAC 2 cut(s) 427, 1285
HindII GTYRAC 2 cut(s) 427, 1285
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 7 cut(s) 128, 144, 187, 222, 419, 740, 1032
HpaI GTTAAC 1 cut(s) 1285
HpaII CCGG 2 cut(s) 301, 1271
HphI GGTGA 4 cut(s) 97, 416, 788, 1086
Hpy166II GTNNAC 3 cut(s) 427, 1285, 1346
Hpy188I TCNGA 5 cut(s) 133, 559, 1056, 1071, 1199
Hpy188III TCNNGA 4 cut(s) 226, 416, 1060, 1262
Hpy8I GTNNAC 3 cut(s) 427, 1285, 1346
Hpy99I CGWCG 2 cut(s) 92, 452
HpyAV CCTTC 4 cut(s) 41, 434, 509, 1324
HpyCH4III ACNGT 4 cut(s) 197, 896, 1316, 1359
HpyCH4IV ACGT 2 cut(s) 1000, 1281
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 821, 1043, 1152
HpyF3I CTNAG 4 cut(s) 278, 723, 759, 1149
HpySE526I ACGT 2 cut(s) 1000, 1281
Hsp92I GRCGYC 1 cut(s) 773
Hsp92II CATG 5 cut(s) 67, 73, 960, 1128, 1265
HspAI GCGC 4 cut(s) 395, 410, 834, 1013
KspAI GTTAAC 1 cut(s) 1285
KspI CCGCGG 1 cut(s) 1291
Kzo9I GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
LmnI GCTCC 1 cut(s) 506
Lsp1109I GCAGC 3 cut(s) 673, 1210, 1220
MaeI CTAG 1 cut(s) 38
MaeII ACGT 2 cut(s) 1000, 1281
MaeIII GTNAC 9 cut(s) 404, 532, 578, 701, 730, 1001, 1092, 1127, 1277
MalI GATC 8 cut(s) 29, 47, 216, 230, 334, 384, 465, 1058
MbiI CCGCTC 2 cut(s) 981, 1216
MboI GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
MboII GAAGA 6 cut(s) 187, 190, 193, 236, 761, 843
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 566
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 7 cut(s) 127, 287, 316, 357, 763, 1036, 1269
MslI CAYNNNNRTG 2 cut(s) 68, 992
MspA1I CMGCKG 1 cut(s) 1290
MspI CCGG 2 cut(s) 301, 1271
MspR9I CCNGG 3 cut(s) 301, 1086, 1271
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 1 cut(s) 1086
MvnI CGCG 4 cut(s) 397, 410, 834, 1290
MwoI GCNNNNNNNGC 3 cut(s) 821, 1043, 1152
NciI CCSGG 2 cut(s) 301, 1271
NcoI CCATGG 1 cut(s) 63
NdeI CATATG 2 cut(s) 58, 745
NdeII GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
NlaIII CATG 5 cut(s) 67, 73, 960, 1128, 1265
NlaIV GGNNCC 3 cut(s) 445, 919, 1294
NmuCI GTSAC 7 cut(s) 404, 532, 578, 701, 1092, 1127, 1277
NspI RCATGY 2 cut(s) 73, 1128
PagI TCATGA 1 cut(s) 1261
PciI ACATGT 2 cut(s) 69, 1124
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 6 cut(s) 144, 187, 222, 419, 740, 1032
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 3 cut(s) 688, 1225, 1235
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 1001
PscI ACATGT 2 cut(s) 69, 1124
PsiI TTATAA 2 cut(s) 285, 591
Psp6I CCWGG 1 cut(s) 1084
PspGI CCWGG 1 cut(s) 1084
PspN4I GGNNCC 3 cut(s) 445, 919, 1294
PspPI GGNCC 1 cut(s) 1088
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 6 cut(s) 329, 341, 1136, 1190, 1268, 1345
RsaNI GTAC 6 cut(s) 328, 340, 1135, 1189, 1267, 1344
RseI CAYNNNNRTG 2 cut(s) 68, 992
SacII CCGCGG 1 cut(s) 1291
SatI GCNGC 3 cut(s) 687, 1224, 1234
Sau3AI GATC 8 cut(s) 27, 45, 214, 228, 332, 382, 463, 1056
Sau96I GGNCC 1 cut(s) 1088
ScaI AGTACT 2 cut(s) 1136, 1190
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 301, 1086, 1271
Sfr303I CCGCGG 1 cut(s) 1291
SgrBI CCGCGG 1 cut(s) 1291
SmiMI CAYNNNNRTG 2 cut(s) 68, 992
SmlI CTYRAG 1 cut(s) 1246
SmoI CTYRAG 1 cut(s) 1246
Sse9I AATT 1 cut(s) 566
SsiI CCGC 7 cut(s) 668, 824, 981, 1214, 1288, 1290, 1350
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 299, 1084, 1269
StyI CCWWGG 3 cut(s) 63, 343, 595
TaaI ACNGT 4 cut(s) 197, 896, 1316, 1359
TaiI ACGT 2 cut(s) 1003, 1284
TaqI TCGA 3 cut(s) 225, 255, 1218
TasI AATT 1 cut(s) 566
TatI WGTACW 2 cut(s) 1134, 1188
TfiI GAWTC 6 cut(s) 144, 187, 222, 419, 740, 1032
TscAI CASTG 2 cut(s) 385, 516
TseFI GTSAC 7 cut(s) 404, 532, 578, 701, 1092, 1127, 1277
TseI GCWGC 3 cut(s) 686, 1223, 1233
Tsp45I GTSAC 7 cut(s) 404, 532, 578, 701, 1092, 1127, 1277
TspDTI ATGAA 6 cut(s) 45, 200, 241, 273, 732, 762
TspGWI ACGGA 3 cut(s) 896, 942, 1308
TspRI CASTG 2 cut(s) 385, 516
Van91I CCANNNNNTGG 1 cut(s) 1085
XceI RCATGY 2 cut(s) 73, 1128
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 2 cut(s) 1136, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.