Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012766

Physical Location & Seq

Genomic Coordinates Reverse (-)

4472199 .. 4474189

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGCCGTACCAATCATCGCCGGTCGTGGCGGTCCTCCTCCTCACGATCTTCTCCATCTCATCGGCCCTTGACATGTCGATCATCTCCTACGACAGCAACAACCACCTCGGAGACAGCAAGTCGTCGGGCAGCTGGAGGACCGACGATGAGGTGATGTCGATATACGAGGGGTGGCTGGCGGAGCACGGAAAGGCATACAACGCTTTGGGAGAGAAGGAGAGAAGGTTCCAGATCTTCAAGGACAACCTTAGGTACATCGACGAACAAAACTCCAAGAACCTCAGCTACAGGCTCGGTCTGAACAGGTTCGCCGATCTGTCGAACGAGGAGTACCGGAACACTTACCTTGGCGCCAAGACCCGCGCGCAGATGAAGCGGGTGTCCAACAGGAACACCAAGAGCGACCGGTACGCGCCACGTGTCGGCGATTCGTTGCCCGACTCCATTGATTGGAGGAAGGAGGGCGCGGTAAGTCCAGTCAAAGACCAAGGCAGCTGTGGGAGTTGCTGGGCATTCTCAACTATCTCCGCCGTGGAAGGTATCAATAAGCTAGTCACCGGCGATCTCATCTCCCTATCTGAGCAGGAGCTGGTAGACTGCGATAGAACGTACAACCAAGGCTGCAATGGAGGTCTTATGGACTATGGCTTCGAGTTCATCATCAACAATGGCGGCATTGATAGCGAAGAGGACTATCCTTACAAAGGATATGATGCCACATGTGACACCTACAGGAAAAATGCCAAGGTTGTTTCGATTGACGATTACGAAGATGTTCCTACATACAATGAGAAAGCACTGCAGAAGGCTGTTGCCAATCAGCCAATTGCCGTTGCCATTGAAGGGGGTGGCAGAGACTTCCAGTTGTATATCTCCTTCAGGGTGTGTTTACGGGACGTTGTGGGACAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010494 GO:0016787 GO:0019538 GO:0030054 GO:0030163 GO:0032991 GO:0035770 GO:0036464 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0070011 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

306

Amino Acids

34.15

Weight (kDa)

4.95

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47128 AT5G43060
fragaria_vesca	FvH4_2g33910
malus_domestica	MD08G1065500.v1.1 MD08G1093900.v1.1 MD15G1078300.v1.1
prunus_persica	Prupe.1G431000_v2.0.a1
pyrus_communis	pycom08g07660 pycom15g07310
rosa_chinensis	RchiOBHm_Chr6g0308501
rosa_laevigata	RLG00000010637
rosa_multiflora	Rmu_sc0020439.1_g000004
rosa_roxburghii	Rroxscaffold_7G00160070
rosa_rugosa	Rorug06G0367300
rosa_samantha	Rh6AG477200 Rh6BG487400 Rh6DG478500
rosa_wichuraiana	Rw6G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	4 cut(s)	366, 368, 416, 470
AciI	CCGC	7 cut(s)	32, 182, 364, 379, 470, 531, 675
AcuI	CTGAAG	1 cut(s)	865
AcvI	CACGTG	1 cut(s)	422
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	5 cut(s)	11, 257, 335, 413, 614
AfiI	CCNNNNNNNGG	4 cut(s)	425, 453, 707, 846
AflIII	ACRYGT	3 cut(s)	75, 421, 722
AgeI	ACCGGT	1 cut(s)	408
AgsI	TTSAA	2 cut(s)	241, 845
AhdI	GACNNNNNGTC	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	5 cut(s)	135, 288, 498, 553, 592
AluI	AGCT	5 cut(s)	135, 288, 498, 553, 592
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	108, 852
AlwNI	CAGNNNCTG	1 cut(s)	592
AoxI	GGCC	2 cut(s)	5, 66
ApeKI	GCWGC	3 cut(s)	132, 495, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AsiGI	ACCGGT	1 cut(s)	408
Asp700I	GAANNNNTTC	2 cut(s)	308, 777
AspLEI	GCGC	5 cut(s)	356, 368, 370, 418, 470
AspS9I	GGNCC	4 cut(s)	5, 34, 67, 141
AsuHPI	GGTGA	2 cut(s)	166, 550
AvaII	GGWCC	2 cut(s)	34, 141
AxyI	CCTNAGG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BbrPI	CACGTG	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	189
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	144, 507, 611
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	2 cut(s)	518, 818
BcoDI	GTCTC	2 cut(s)	108, 852
BfaI	CTAG	2 cut(s)	554, 916
BfmI	CTRYAG	3 cut(s)	289, 733, 803
BfoI	RGCGCY	1 cut(s)	357
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	4 cut(s)	133, 496, 625, 676
BlsI	GCNGC	4 cut(s)	134, 497, 626, 677
Bme18I	GGWCC	2 cut(s)	34, 141
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	4 cut(s)	5, 34, 67, 141
BmiI	GGNNCC	3 cut(s)	6, 230, 355
BmsI	GCATC	1 cut(s)	706
BpmI	CTGGAG	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	6 cut(s)	109, 349, 490, 534, 619, 747
BsaWI	WCCGGW	2 cut(s)	336, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	425, 453, 707, 846
Bse118I	RCCGGY	3 cut(s)	22, 408, 560
Bse1I	ACTGG	2 cut(s)	479, 865
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	634
BseDI	CCNNGG	6 cut(s)	109, 349, 490, 534, 619, 747
BseLI	CCNNNNNNNGG	4 cut(s)	425, 453, 707, 846
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	298, 573
BseNI	ACTGG	2 cut(s)	479, 865
BsePI	GCGCGC	1 cut(s)	366
BseRI	GAGGAG	3 cut(s)	29, 32, 344
BseXI	GCAGC	3 cut(s)	144, 507, 611
BseYI	CCCAGC	1 cut(s)	510
Bsh1236I	CGCG	4 cut(s)	366, 368, 416, 470
Bsh1285I	CGRYCG	2 cut(s)	27, 409
BshFI	GGCC	2 cut(s)	7, 68
BshNI	GGYRCC	1 cut(s)	353
BshTI	ACCGGT	1 cut(s)	408
BsiEI	CGRYCG	2 cut(s)	27, 409
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	23, 337, 409, 561
BslFI	GGGAC	1 cut(s)	911
BslI	CCNNNNNNNGG	4 cut(s)	425, 453, 707, 846
BsmAI	GTCTC	2 cut(s)	108, 852
BsmFI	GGGAC	1 cut(s)	911
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	7, 68
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	48, 81, 234, 316, 565
BspACI	CCGC	7 cut(s)	32, 182, 364, 379, 470, 531, 675
BspANI	GGCC	2 cut(s)	7, 68
BspCNI	CTCAG	2 cut(s)	297, 574
BspFNI	CGCG	4 cut(s)	366, 368, 416, 470
BspLI	GGNNCC	3 cut(s)	6, 230, 355
BspMAI	CTGCAG	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	634
BsrFI	RCCGGY	3 cut(s)	22, 408, 560
BsrI	ACTGG	2 cut(s)	479, 865
BssAI	RCCGGY	3 cut(s)	22, 408, 560
BssECI	CCNNGG	6 cut(s)	109, 349, 490, 534, 619, 747
BssHII	GCGCGC	1 cut(s)	366
BssMI	GATC	5 cut(s)	48, 81, 234, 316, 565
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	4 cut(s)	349, 490, 619, 747
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	180, 368
BstDEI	CTNAG	3 cut(s)	251, 284, 582
BstDSI	CCRYGG	1 cut(s)	534
BstENI	CCTNNNNNAGG	1 cut(s)	705
BstFNI	CGCG	4 cut(s)	366, 368, 416, 470
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	5 cut(s)	356, 368, 370, 418, 470
BstKTI	GATC	5 cut(s)	51, 84, 237, 319, 568
BstMAI	GTCTC	2 cut(s)	108, 852
BstMBI	GATC	5 cut(s)	48, 81, 234, 316, 565
BstMCI	CGRYCG	2 cut(s)	27, 409
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 203, 376, 684
BstNSI	RCATGY	2 cut(s)	79, 726
BstSFI	CTRYAG	3 cut(s)	289, 733, 803
BstUI	CGCG	4 cut(s)	366, 368, 416, 470
BstV1I	GCAGC	3 cut(s)	144, 507, 611
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	7, 68
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	3
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	1 cut(s)	800
Cac8I	GCNNGC	2 cut(s)	180, 368
CaiI	CAGNNNCTG	1 cut(s)	592
CfoI	GCGC	5 cut(s)	356, 368, 370, 418, 470
Cfr10I	RCCGGY	3 cut(s)	22, 408, 560
Cfr13I	GGNCC	4 cut(s)	5, 34, 67, 141
Csp6I	GTAC	5 cut(s)	10, 256, 334, 412, 613
CspAI	ACCGGT	1 cut(s)	408
CviAII	CATG	2 cut(s)	76, 723
CviQI	GTAC	5 cut(s)	10, 256, 334, 412, 613
DdeI	CTNAG	3 cut(s)	251, 284, 582
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	5 cut(s)	50, 83, 236, 318, 567
DpnII	GATC	5 cut(s)	48, 81, 234, 316, 565
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	684
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	684
EciI	GGCGGA	2 cut(s)	197, 520
Eco130I	CCWWGG	4 cut(s)	349, 490, 619, 747
Eco47I	GGWCC	2 cut(s)	34, 141
Eco57I	CTGAAG	1 cut(s)	865
Eco72I	CACGTG	1 cut(s)	422
Eco81I	CCTNAGG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	705
EcoT14I	CCWWGG	4 cut(s)	349, 490, 619, 747
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	4 cut(s)	349, 490, 619, 747
FaeI	CATG	2 cut(s)	79, 726
FaiI	YATR	9 cut(s)	77, 166, 199, 641, 648, 714, 724, 787, 873
FaqI	GGGAC	1 cut(s)	911
FatI	CATG	2 cut(s)	75, 722
FauI	CCCGC	2 cut(s)	371, 372
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	133, 496, 625, 676
Fsp4HI	GCNGC	4 cut(s)	133, 496, 625, 676
FspBI	CTAG	2 cut(s)	554, 916
GlaI	GCGC	5 cut(s)	355, 367, 369, 417, 469
GluI	GCNGC	4 cut(s)	133, 496, 625, 676
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	7, 68
HapII	CCGG	4 cut(s)	23, 337, 409, 561
HhaI	GCGC	5 cut(s)	356, 368, 370, 418, 470
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	79, 726
Hin6I	GCGC	5 cut(s)	354, 366, 368, 416, 468
HinP1I	GCGC	5 cut(s)	354, 366, 368, 416, 468
HinfI	GANTC	2 cut(s)	431, 443
HpaII	CCGG	4 cut(s)	23, 337, 409, 561
HphI	GGTGA	2 cut(s)	166, 550
Hpy166II	GTNNAC	2 cut(s)	598, 893
Hpy188I	TCNGA	3 cut(s)	113, 303, 583
Hpy188III	TCNNGA	2 cut(s)	46, 232
Hpy8I	GTNNAC	2 cut(s)	598, 893
Hpy99I	CGWCG	3 cut(s)	130, 149, 266
HpyAV	CCTTC	7 cut(s)	211, 219, 454, 533, 802, 839, 889
HpyCH4IV	ACGT	3 cut(s)	421, 611, 900
HpyCH4V	TGCA	2 cut(s)	627, 805
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 203, 376, 684
HpyF3I	CTNAG	3 cut(s)	251, 284, 582
HpySE526I	ACGT	3 cut(s)	421, 611, 900
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	79, 726
HspAI	GCGC	5 cut(s)	354, 366, 368, 416, 468
KasI	GGCGCC	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	48, 81, 234, 316, 565
LmnI	GCTCC	2 cut(s)	184, 589
Lsp1109I	GCAGC	3 cut(s)	144, 507, 611
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	2 cut(s)	554, 916
MaeII	ACGT	3 cut(s)	421, 611, 900
MaeIII	GTNAC	2 cut(s)	556, 725
MalI	GATC	5 cut(s)	50, 83, 236, 318, 567
MboI	GATC	5 cut(s)	48, 81, 234, 316, 565
MboII	GAAGA	4 cut(s)	43, 229, 701, 785
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	828
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	411
MroXI	GAANNNNTTC	2 cut(s)	308, 777
MspA1I	CMGCKG	2 cut(s)	135, 498
MspI	CCGG	4 cut(s)	23, 337, 409, 561
MunI	CAATTG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	515
MvnI	CGCG	4 cut(s)	366, 368, 416, 470
MwoI	GCNNNNNNNGC	4 cut(s)	184, 203, 376, 684
NarI	GGCGCC	1 cut(s)	354
NdeII	GATC	5 cut(s)	48, 81, 234, 316, 565
NlaIII	CATG	2 cut(s)	79, 726
NlaIV	GGNNCC	3 cut(s)	6, 230, 355
NmuCI	GTSAC	2 cut(s)	556, 725
NspI	RCATGY	2 cut(s)	79, 726
PauI	GCGCGC	1 cut(s)	366
PciI	ACATGT	2 cut(s)	75, 722
PctI	GAATGC	1 cut(s)	515
PdmI	GAANNNNTTC	2 cut(s)	308, 777
PfeI	GAWTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	453
PinAI	ACCGGT	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	134, 497, 626, 677
PleI	GAGTC	1 cut(s)	437
PluTI	GGCGCC	1 cut(s)	357
PmaCI	CACGTG	1 cut(s)	422
PmlI	CACGTG	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	437
Ppu21I	YACGTR	1 cut(s)	422
PscI	ACATGT	2 cut(s)	75, 722
PspCI	CACGTG	1 cut(s)	422
PspFI	CCCAGC	1 cut(s)	510
PspN4I	GGNNCC	3 cut(s)	6, 230, 355
PspPI	GGNCC	4 cut(s)	5, 34, 67, 141
PsrI	GAACNNNNNNTAC	4 cut(s)	272, 304, 317, 349
PstI	CTGCAG	1 cut(s)	807
PstNI	CAGNNNCTG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	234
PteI	GCGCGC	1 cut(s)	366
PvuII	CAGCTG	2 cut(s)	135, 498
RsaI	GTAC	5 cut(s)	11, 257, 335, 413, 614
RsaNI	GTAC	5 cut(s)	10, 256, 334, 412, 613
SatI	GCNGC	4 cut(s)	133, 496, 625, 676
Sau3AI	GATC	5 cut(s)	48, 81, 234, 316, 565
Sau96I	GGNCC	4 cut(s)	5, 34, 67, 141
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	189
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	3 cut(s)	289, 733, 803
SfoI	GGCGCC	1 cut(s)	355
SgrAI	CRCCGGYG	1 cut(s)	560
SinI	GGWCC	2 cut(s)	34, 141
Sse9I	AATT	1 cut(s)	828
SsiI	CCGC	7 cut(s)	32, 182, 364, 379, 470, 531, 675
SspDI	GGCGCC	1 cut(s)	353
SspMI	CTAG	2 cut(s)	554, 916
StyI	CCWWGG	4 cut(s)	349, 490, 619, 747
TaiI	ACGT	3 cut(s)	424, 614, 903
TaqI	TCGA	6 cut(s)	80, 161, 261, 323, 654, 758
TaqII	GACCGA	2 cut(s)	158, 287
TasI	AATT	1 cut(s)	828
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	1 cut(s)	807
TseFI	GTSAC	2 cut(s)	556, 725
TseI	GCWGC	3 cut(s)	132, 495, 624
Tsp45I	GTSAC	2 cut(s)	556, 725
TspDTI	ATGAA	2 cut(s)	389, 649
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	807
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	34, 141
XagI	CCTNNNNNAGG	1 cut(s)	705
XceI	RCATGY	2 cut(s)	79, 726
XcmI	CCANNNNNNNNNTGG	2 cut(s)	497, 626
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	2 cut(s)	308, 777
XspI	CTAG	2 cut(s)	554, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.