AT1G48635

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008455
Physical Location & Seq
Forward (+)
17983646 .. 17986292
2647 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48635.2

Sequence Viewer

Length: 1095 bp
ATGGATTTCGTTAGGGGTTTTTGGAGGAAGCATAGAAGGAAGGTCTTGGTGACGGCTGGTTGTTTGGGAAGTGGGTATTTACTCTACAAACTATACAATTCCCATACTCGTAGGCTTGCTGATTTGGAACGAGAACTCGCTCACGAGCGTGAAAATGACGAAATCATCAAAACCCAAATGAAAGCACATTTCGAGAGTATTCAGATGATTGTGGATTCGACCACACTGCCTCACGCAATGCAGTTTTTGAGTATCCGTATCAGCGAGGAGATCGATGTCTCTCATGTTATGGACAGACTGAACCAAGGGAAAGGAATGCTGAGTCCACCTGAGAAACTTCAGCTCTGGGATGAGCTCAAGATTTTGAGTTTCACGAGGATGGTTTTGTCTCTGTGGTCTGTGACAATGCTTAGCTTATACATTAGGGTTCAAGTCAACATTTTAGGCAGACATTTGTATGTTGACACCGCTCGAGCTCTTGGCAGCTCTCATTTACTTGAAGAGGTAGATCTCATTGATAGAGATGATGAACAGAAGTTTTTGTCGAGTGCTGATTTTCTTGTCACCAATGCAATGCCAAGTTTGATTTCAGATATGCAGGGTTCAGCCGAGGAAGTCCTTAAAGGAAAGCAGTTAAAGGATGTAATTACCACAAGAGTTCTTCAAGAAACCGTGATGCAGATTGTAGATGTGTTTATGAGCACTGGAAGCCCACATCACTGGGTTGATTATTTAATGATGCCTCAAGACACAAAGCTTTCAAGAACCACAAGTGACTCTTCTGATGAAGCTGTGTCCAAGTTTCATCAACTCATGGTTGAGACTCGAGAAGTACTCATCAGCACTGAATTCACAAATATAGTCGAAATTTCGCTCAAGTGCTTCACGGATGTGTTGGTAGAGGAAATGGAAACGCAGACTGAAGCAGGCGGTTTGGCTACAGGGAAACCATTGGCAAAGGTCTTACCACAGATTGAGAAGACAATGAATGTGATTACAGCTGAACCAAGCAAGAACCGGTTCTTACAAATCATCAGAGATCTGCCTGAAGTTAAACTCTTTTTTACTCTTTTATACGCTAATATGCCGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Peroxin-3

Protein Analysis

364

Amino Acids

41.7

Weight (kDa)

5.62

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peroxin-3 PF04882 111 - 397 3.4e-28 Peroxin-3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 470
AciI CCGC 3 cut(s) 468, 930, 1088
AcsI RAATTY 2 cut(s) 848, 867
AcuI CTGAAG 3 cut(s) 323, 942, 1068
AfaI GTAC 1 cut(s) 834
AgeI ACCGGT 1 cut(s) 1017
AgsI TTSAA 4 cut(s) 431, 500, 665, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 571, 603
AleI CACNNNNGTG 2 cut(s) 147, 890
AluBI AGCT 8 cut(s) 343, 355, 414, 476, 486, 757, 791, 1001
AluI AGCT 8 cut(s) 343, 355, 414, 476, 486, 757, 791, 1001
Alw21I GWGCWC 3 cut(s) 357, 478, 704
Alw26I GTCTC 3 cut(s) 283, 393, 815
Ama87I CYCGRG 2 cut(s) 471, 825
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 2 cut(s) 848, 867
AsiGI ACCGGT 1 cut(s) 1017
Asp700I GAANNNNTTC 1 cut(s) 1019
AsuHPI GGTGA 2 cut(s) 61, 556
AvaI CYCGRG 2 cut(s) 471, 825
BanII GRGCYC 2 cut(s) 357, 478
BauI CACGAG 2 cut(s) 143, 373
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 3 cut(s) 357, 478, 704
BbvI GCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 373
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciVI GTATCC 1 cut(s) 263
BcoDI GTCTC 3 cut(s) 283, 393, 815
BfmI CTRYAG 1 cut(s) 939
BfuI GTATCC 1 cut(s) 263
BglII AGATCT 2 cut(s) 508, 1039
BisI GCNGC 2 cut(s) 484, 1088
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 2 cut(s) 485, 1089
BmcAI AGTACT 1 cut(s) 834
BmeT110I CYCGRG 2 cut(s) 471, 825
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 2 cut(s) 666, 729
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 819, 851
Bpu1102I GCTNAGC 1 cut(s) 410
BpuEI CTTGAG 3 cut(s) 341, 729, 860
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 304, 609
BsaWI WCCGGW 1 cut(s) 1017
Bse118I RCCGGY 1 cut(s) 1017
Bse1I ACTGG 2 cut(s) 709, 725
Bse3DI GCAATG 2 cut(s) 243, 579
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 304, 609
BseGI GGATG 4 cut(s) 355, 384, 646, 895
BseMI GCAATG 2 cut(s) 243, 579
BseMII CTCAG 2 cut(s) 311, 321
BseNI ACTGG 2 cut(s) 709, 725
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 495
BshTI ACCGGT 1 cut(s) 1017
BshVI ATCGAT 1 cut(s) 273
BsiHKAI GWGCWC 3 cut(s) 357, 478, 704
BsiHKCI CYCGRG 2 cut(s) 471, 825
BsiSI CCGG 1 cut(s) 1018
BsmAI GTCTC 3 cut(s) 283, 393, 815
BsmI GAATGC 1 cut(s) 321
BsoBI CYCGRG 2 cut(s) 471, 825
Bsp1286I GDGCHC 3 cut(s) 357, 478, 704
Bsp143I GATC 3 cut(s) 270, 508, 1039
Bsp1720I GCTNAGC 1 cut(s) 410
BspACI CCGC 3 cut(s) 468, 930, 1088
BspCNI CTCAG 2 cut(s) 312, 322
BspDI ATCGAT 1 cut(s) 273
BsrBI CCGCTC 1 cut(s) 470
BsrDI GCAATG 2 cut(s) 243, 579
BsrFI RCCGGY 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 709, 725
BssAI RCCGGY 1 cut(s) 1017
BssECI CCNNGG 2 cut(s) 304, 609
BssMI GATC 3 cut(s) 270, 508, 1039
BssSI CACGAG 2 cut(s) 143, 373
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 2 cut(s) 143, 373
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 2 cut(s) 495, 784
BstC8I GCNNGC 2 cut(s) 117, 928
BstDEI CTNAG 3 cut(s) 320, 330, 410
BstF5I GGATG 4 cut(s) 355, 384, 646, 895
BstKTI GATC 3 cut(s) 273, 511, 1042
BstMAI GTCTC 3 cut(s) 283, 393, 815
BstMBI GATC 3 cut(s) 270, 508, 1039
BstMWI GCNNNNNNNGC 1 cut(s) 708
BstSFI CTRYAG 1 cut(s) 939
BstV1I GCAGC 1 cut(s) 495
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 2 cut(s) 508, 1039
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 2 cut(s) 508, 1039
Bsu15I ATCGAT 1 cut(s) 273
BsuI GTATCC 1 cut(s) 263
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 4 cut(s) 355, 384, 646, 895
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 4 cut(s) 224, 702, 718, 843
Cac8I GCNNGC 2 cut(s) 117, 928
Cfr10I RCCGGY 1 cut(s) 1017
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 833
CspAI ACCGGT 1 cut(s) 1017
CviAII CATG 2 cut(s) 284, 814
CviQI GTAC 1 cut(s) 833
DdeI CTNAG 3 cut(s) 320, 330, 410
DpnI GATC 3 cut(s) 272, 510, 1041
DpnII GATC 3 cut(s) 270, 508, 1039
Eam1104I CTCTTC 2 cut(s) 495, 784
EarI CTCTTC 2 cut(s) 495, 784
Ecl136II GAGCTC 2 cut(s) 355, 476
Eco130I CCWWGG 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 357, 478
Eco53kI GAGCTC 2 cut(s) 355, 476
Eco57I CTGAAG 3 cut(s) 323, 942, 1068
Eco88I CYCGRG 2 cut(s) 471, 825
EcoICRI GAGCTC 2 cut(s) 355, 476
EcoRI GAATTC 1 cut(s) 848
EcoT14I CCWWGG 1 cut(s) 304
EcoT38I GRGCYC 2 cut(s) 357, 478
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 2 cut(s) 287, 817
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FatI CATG 2 cut(s) 283, 813
Fnu4HI GCNGC 2 cut(s) 484, 1088
FokI GGATG 4 cut(s) 362, 391, 653, 902
FriOI GRGCYC 2 cut(s) 357, 478
Fsp4HI GCNGC 2 cut(s) 484, 1088
GluI GCNGC 2 cut(s) 484, 1088
HapII CCGG 1 cut(s) 1018
Hin1II CATG 2 cut(s) 287, 817
HincII GTYRAC 2 cut(s) 436, 463
HindII GTYRAC 2 cut(s) 436, 463
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 4 cut(s) 215, 322, 776, 823
HpaII CCGG 1 cut(s) 1018
HphI GGTGA 2 cut(s) 61, 556
Hpy166II GTNNAC 3 cut(s) 326, 436, 463
Hpy188I TCNGA 4 cut(s) 204, 592, 784, 1037
Hpy188III TCNNGA 8 cut(s) 143, 193, 358, 373, 665, 746, 762, 827
Hpy8I GTNNAC 3 cut(s) 326, 436, 463
HpyAV CCTTC 2 cut(s) 30, 34
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 241, 572, 598, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 708
HpyF3I CTNAG 3 cut(s) 320, 330, 410
Hsp92II CATG 2 cut(s) 287, 817
Kzo9I GATC 3 cut(s) 270, 508, 1039
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 2 cut(s) 666, 729
MaeIII GTNAC 4 cut(s) 49, 400, 562, 773
MalI GATC 3 cut(s) 272, 510, 1041
MbiI CCGCTC 1 cut(s) 470
MboI GATC 3 cut(s) 270, 508, 1039
MboII GAAGA 4 cut(s) 512, 653, 771, 991
MflI RGATCY 2 cut(s) 508, 1039
MhlI GDGCHC 3 cut(s) 357, 478, 704
MluCI AATT 4 cut(s) 97, 645, 848, 867
MlyI GAGTC 3 cut(s) 331, 770, 817
MnlI CCTC 8 cut(s) 18, 240, 259, 369, 496, 604, 753, 895
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 4 cut(s) 621, 635, 734, 1053
MslI CAYNNNNRTG 4 cut(s) 147, 377, 456, 890
MspA1I CMGCKG 1 cut(s) 1001
MspI CCGG 1 cut(s) 1018
Mva1269I GAATGC 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 708
NdeII GATC 3 cut(s) 270, 508, 1039
NlaIII CATG 2 cut(s) 287, 817
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 4 cut(s) 49, 400, 562, 773
OliI CACNNNNGTG 2 cut(s) 147, 890
PaeR7I CTCGAG 2 cut(s) 471, 825
PctI GAATGC 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 1 cut(s) 215
PinAI ACCGGT 1 cut(s) 1017
PkrI GCNGC 2 cut(s) 485, 1089
PleI GAGTC 3 cut(s) 330, 770, 817
PpsI GAGTC 3 cut(s) 330, 770, 817
Psp124BI GAGCTC 2 cut(s) 357, 478
PspXI VCTCGAGB 1 cut(s) 471
PsuI RGATCY 2 cut(s) 508, 1039
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 1 cut(s) 834
RsaNI GTAC 1 cut(s) 833
RseI CAYNNNNRTG 4 cut(s) 147, 377, 456, 890
SacI GAGCTC 2 cut(s) 357, 478
SaqAI TTAA 4 cut(s) 621, 635, 734, 1053
SatI GCNGC 2 cut(s) 484, 1088
Sau3AI GATC 3 cut(s) 270, 508, 1039
ScaI AGTACT 1 cut(s) 834
SchI GAGTC 3 cut(s) 331, 770, 817
SduI GDGCHC 3 cut(s) 357, 478, 704
SfaNI GCATC 2 cut(s) 666, 729
SfcI CTRYAG 1 cut(s) 939
Sfr274I CTCGAG 2 cut(s) 471, 825
SlaI CTCGAG 2 cut(s) 471, 825
SmiMI CAYNNNNRTG 4 cut(s) 147, 377, 456, 890
SmlI CTYRAG 5 cut(s) 356, 471, 744, 825, 875
SmoI CTYRAG 5 cut(s) 356, 471, 744, 825, 875
Sse9I AATT 4 cut(s) 97, 645, 848, 867
SsiI CCGC 3 cut(s) 468, 930, 1088
SstI GAGCTC 2 cut(s) 357, 478
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 673
TaqI TCGA 7 cut(s) 192, 218, 273, 472, 545, 826, 864
TasI AATT 4 cut(s) 97, 645, 848, 867
TatI WGTACW 1 cut(s) 832
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 4 cut(s) 621, 635, 734, 1053
Tru9I TTAA 4 cut(s) 621, 635, 734, 1053
TscAI CASTG 4 cut(s) 231, 709, 725, 850
TseFI GTSAC 4 cut(s) 49, 400, 562, 773
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 4 cut(s) 49, 400, 562, 773
TspDTI ATGAA 5 cut(s) 194, 543, 794, 801, 1001
TspGWI ACGGA 2 cut(s) 245, 902
TspRI CASTG 4 cut(s) 231, 709, 725, 850
XapI RAATTY 2 cut(s) 848, 867
XhoI CTCGAG 2 cut(s) 471, 825
XmnI GAANNNNTTC 1 cut(s) 1019
ZrmI AGTACT 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.