Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025325.1

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

26340 .. 30162

Gene Structure 3823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025325.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgctttctttgaggggcttttggtggaggcataggaggaaggtgcttgttacaactggtgtgttaggaggtggatatctactgtataaactatataatgctcacagacagaggcttactgacctggaggccgagctcgcccgtgaacaagagagcaatgaggagctccttaaggctaaaatgcaagctcattttgagaacattcaaagcattgctgatacaacaacgctgcctcacgtgatgcactatttgagtagtcggatagcagaagagttagatactacttatatcaccgaaaggttaatgcaaatgaaggggaagtctccagagaaacttgaattgtgggatagattaaaagttctaagcttcacaagaatggtgttgtcgttgtggtcgatgacgatgcttagcttatatattagagttcaagtcaatatattagggagacatttatacattgatactgcacgtggttttggaagctctcttatagaggatgctgaactcattgatagggatgaccagcagaagtttctagcaagttctgattatctctccagttatggcatgcctgctttaatttcgaatatccaggcagcagcagcagaagttcttaatggaaagcagctaactgaacggttcaataccacggttctccatgatactattatgcaaatgcttgacaagttcatgagcacaggaagtccccatcactgggtgaactacttgatgccagaggatgctcgttgggttgaactagcgactgccttcagcagtgatagcacagttcttccggatgtcaccaaatttgaacaacttatgctggagacgcggtcagtaatatcaagtggtgaatttggtagtattgctcagatggcactgagagcagtggtggatacagtggtagtggatatgggcgctcaatctggacgtgatctagcgtccggaacgccccttgccaaagttttggcaagagttgcacagatgggtcccacactccttggagaatcaagcaaattcgtacagatcattctaaatgtaccagaagttgagctcttttttactctcatctattcacatatgcaaatctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

364

Amino Acids

41.21

Weight (kDa)

5.84

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	832
AccIII	TCCGGA	2 cut(s)	793, 944
AciI	CCGC	1 cut(s)	832
AcsI	RAATTY	3 cut(s)	806, 854, 1016
AcuI	CTGAAG	1 cut(s)	754
AcvI	CACGTG	2 cut(s)	238, 470
AdeI	CACNNNGTG	1 cut(s)	718
AfaI	GTAC	2 cut(s)	1023, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	714, 715
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	206, 338, 428, 643, 755, 812
AjiI	CACGTC	1 cut(s)	932
AjnI	CCWGG	2 cut(s)	123, 591
AluBI	AGCT	8 cut(s)	136, 166, 188, 366, 411, 483, 628, 1054
AluI	AGCT	8 cut(s)	136, 166, 188, 366, 411, 483, 628, 1054
Alw21I	GWGCWC	4 cut(s)	138, 168, 698, 1056
Alw26I	GTCTC	3 cut(s)	327, 439, 821
Aor13HI	TCCGGA	2 cut(s)	793, 944
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	5 cut(s)	229, 596, 599, 602, 625
ApoI	RAATTY	3 cut(s)	806, 854, 1016
AspLEI	GCGC	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	4 cut(s)	283, 730, 793, 863
AsuII	TTCGAA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	989
BaeI	ACNNNNGTAYC	2 cut(s)	888, 921
BanII	GRGCYC	3 cut(s)	138, 168, 1056
BbrPI	CACGTG	2 cut(s)	238, 470
Bbv12I	GWGCWC	4 cut(s)	138, 168, 698, 1056
BbvI	GCAGC	5 cut(s)	216, 608, 611, 614, 637
BccI	CCATC	3 cut(s)	717, 868, 979
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	2 cut(s)	125, 593
BciVI	GTATCC	1 cut(s)	889
BcoDI	GTCTC	3 cut(s)	327, 439, 821
BfaI	CTAG	3 cut(s)	536, 758, 938
BfoI	RGCGCY	1 cut(s)	921
BfrI	CTTAAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	889
BisI	GCNGC	5 cut(s)	230, 597, 600, 603, 626
BlpI	GCTNAGC	1 cut(s)	407
BlsI	GCNGC	5 cut(s)	231, 598, 601, 604, 627
Bme1390I	CCNGG	2 cut(s)	125, 593
Bme18I	GGWCC	1 cut(s)	989
BmgBI	CACGTC	1 cut(s)	932
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	2 cut(s)	990, 991
BmrFI	CCNGG	2 cut(s)	125, 593
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	5 cut(s)	231, 393, 487, 720, 730
BmuI	ACTGGG	1 cut(s)	724
BpmI	CTGGAG	4 cut(s)	146, 309, 541, 845
Bpu1102I	GCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	584
BsaAI	YACGTR	2 cut(s)	238, 470
BsaJI	CCNNGG	2 cut(s)	648, 1000
BsaWI	WCCGGW	2 cut(s)	793, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	714, 715
Bse1I	ACTGG	3 cut(s)	61, 558, 719
Bse3DI	GCAATG	2 cut(s)	163, 210
BseAI	TCCGGA	2 cut(s)	793, 944
BseBI	CCWGG	2 cut(s)	125, 593
BseDI	CCNNGG	2 cut(s)	648, 1000
BseGI	GGATG	4 cut(s)	502, 523, 745, 802
BseLI	CCNNNNNNNGG	2 cut(s)	714, 715
BseMI	GCAATG	2 cut(s)	163, 210
BseMII	CTCAG	2 cut(s)	872, 884
BseNI	ACTGG	3 cut(s)	61, 558, 719
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	5 cut(s)	216, 608, 611, 614, 637
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	832
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	4 cut(s)	138, 168, 698, 1056
BsiSI	CCGG	2 cut(s)	794, 945
BslFI	GGGAC	2 cut(s)	690, 975
BslI	CCNNNNNNNGG	2 cut(s)	714, 715
BsmAI	GTCTC	3 cut(s)	327, 439, 821
BsmBI	CGTCTC	1 cut(s)	821
BsmFI	GGGAC	2 cut(s)	690, 975
BsnI	GGCC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	584
Bsp1286I	GDGCHC	4 cut(s)	138, 168, 698, 1056
Bsp13I	TCCGGA	2 cut(s)	793, 944
Bsp143I	GATC	2 cut(s)	934, 1026
Bsp1720I	GCTNAGC	1 cut(s)	407
BspACI	CCGC	1 cut(s)	832
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	873, 883
BspEI	TCCGGA	2 cut(s)	793, 944
BspFNI	CGCG	1 cut(s)	832
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	2 cut(s)	990, 991
BspT104I	TTCGAA	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	2 cut(s)	163, 210
BsrI	ACTGG	3 cut(s)	61, 558, 719
BssECI	CCNNGG	2 cut(s)	648, 1000
BssMI	GATC	2 cut(s)	934, 1026
BssT1I	CCWWGG	1 cut(s)	1000
Bst2UI	CCWGG	2 cut(s)	125, 593
Bst4CI	ACNGT	5 cut(s)	84, 639, 652, 787, 901
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstBAI	YACGTR	2 cut(s)	238, 470
BstBI	TTCGAA	1 cut(s)	584
BstC8I	GCNNGC	4 cut(s)	138, 186, 569, 573
BstDEI	CTNAG	4 cut(s)	362, 407, 870, 881
BstDSI	CCRYGG	1 cut(s)	648
BstF5I	GGATG	4 cut(s)	502, 523, 745, 802
BstFNI	CGCG	1 cut(s)	832
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	2 cut(s)	937, 1029
BstMAI	GTCTC	3 cut(s)	327, 439, 821
BstMBI	GATC	2 cut(s)	934, 1026
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 602, 780, 829, 875, 884, 977
BstNI	CCWGG	2 cut(s)	125, 593
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	123, 591
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	5 cut(s)	216, 608, 611, 614, 637
BstXI	CCANNNNNNTGG	1 cut(s)	967
BsuI	GTATCC	1 cut(s)	889
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	648
BtrI	CACGTC	1 cut(s)	932
BtsCI	GGATG	4 cut(s)	502, 523, 745, 802
BtsI	GCAGTG	2 cut(s)	781, 894
BtsIMutI	CAGTG	5 cut(s)	712, 781, 878, 894, 906
Cac8I	GCNNGC	4 cut(s)	138, 186, 569, 573
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	1 cut(s)	920
Cfr13I	GGNCC	1 cut(s)	989
CseI	GACGC	2 cut(s)	838, 930
Csp6I	GTAC	2 cut(s)	1022, 1040
CspCI	CAANNNNNGTGG	2 cut(s)	982, 1017
CviAII	CATG	3 cut(s)	568, 659, 691
CviQI	GTAC	2 cut(s)	1022, 1040
DdeI	CTNAG	4 cut(s)	362, 407, 870, 881
DpnI	GATC	2 cut(s)	936, 1028
DpnII	GATC	2 cut(s)	934, 1026
DraIII	CACNNNGTG	1 cut(s)	718
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	3 cut(s)	136, 166, 1054
Eco130I	CCWWGG	1 cut(s)	1000
Eco24I	GRGCYC	3 cut(s)	138, 168, 1056
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	989
Eco53kI	GAGCTC	3 cut(s)	136, 166, 1054
Eco57I	CTGAAG	1 cut(s)	754
Eco72I	CACGTG	2 cut(s)	238, 470
EcoICRI	GAGCTC	3 cut(s)	136, 166, 1054
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRII	CCWGG	2 cut(s)	123, 591
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	1000
EcoT38I	GRGCYC	3 cut(s)	138, 168, 1056
ErhI	CCWWGG	1 cut(s)	1000
Esp3I	CGTCTC	1 cut(s)	821
FaeI	CATG	3 cut(s)	571, 662, 694
FaqI	GGGAC	2 cut(s)	690, 975
FatI	CATG	3 cut(s)	567, 658, 690
FauNDI	CATATG	1 cut(s)	1080
Fnu4HI	GCNGC	5 cut(s)	230, 597, 600, 603, 626
FokI	GGATG	4 cut(s)	509, 530, 752, 809
FriOI	GRGCYC	3 cut(s)	138, 168, 1056
Fsp4HI	GCNGC	5 cut(s)	230, 597, 600, 603, 626
FspBI	CTAG	3 cut(s)	536, 758, 938
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	5 cut(s)	230, 597, 600, 603, 626
GsuI	CTGGAG	4 cut(s)	146, 309, 541, 845
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	794, 945
HgaI	GACGC	2 cut(s)	838, 930
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	3 cut(s)	571, 662, 694
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	1 cut(s)	1007
HpaII	CCGG	2 cut(s)	794, 945
HphI	GGTGA	4 cut(s)	283, 730, 793, 863
Hpy166II	GTNNAC	2 cut(s)	146, 721
Hpy188I	TCNGA	3 cut(s)	261, 547, 873
Hpy188III	TCNNGA	5 cut(s)	326, 691, 794, 927, 945
Hpy8I	GTNNAC	2 cut(s)	146, 721
HpyAV	CCTTC	3 cut(s)	34, 307, 778
HpyCH4III	ACNGT	5 cut(s)	84, 639, 652, 787, 901
HpyCH4IV	ACGT	3 cut(s)	237, 469, 931
HpyCH4V	TGCA	7 cut(s)	184, 244, 307, 467, 673, 980, 1084
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 602, 780, 829, 875, 884, 977
HpyF3I	CTNAG	4 cut(s)	362, 407, 870, 881
HpySE526I	ACGT	3 cut(s)	237, 469, 931
Hsp92II	CATG	3 cut(s)	571, 662, 694
HspAI	GCGC	1 cut(s)	918
KflI	GGGWCCC	1 cut(s)	989
Kpn2I	TCCGGA	2 cut(s)	793, 944
Kzo9I	GATC	2 cut(s)	934, 1026
LmnI	GCTCC	2 cut(s)	163, 171
Lsp1109I	GCAGC	5 cut(s)	216, 608, 611, 614, 637
LweI	GCATC	5 cut(s)	231, 393, 487, 720, 730
MaeI	CTAG	3 cut(s)	536, 758, 938
MaeII	ACGT	3 cut(s)	237, 469, 931
MaeIII	GTNAC	2 cut(s)	49, 799
MalI	GATC	2 cut(s)	936, 1028
MboI	GATC	2 cut(s)	934, 1026
MboII	GAAGA	2 cut(s)	281, 782
MhlI	GDGCHC	4 cut(s)	138, 168, 698, 1056
MluCI	AATT	5 cut(s)	338, 579, 806, 854, 1016
MmeI	TCCRAC	1 cut(s)	239
MroI	TCCGGA	2 cut(s)	793, 944
MseI	TTAA	5 cut(s)	171, 302, 353, 578, 615
MslI	CAYNNNNRTG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	794, 945
MspR9I	CCNGG	2 cut(s)	125, 593
MvaI	CCWGG	2 cut(s)	125, 593
MvnI	CGCG	1 cut(s)	832
MwoI	GCNNNNNNNGC	7 cut(s)	137, 602, 780, 829, 875, 884, 977
NdeI	CATATG	1 cut(s)	1080
NdeII	GATC	2 cut(s)	934, 1026
NlaIII	CATG	3 cut(s)	571, 662, 694
NlaIV	GGNNCC	2 cut(s)	990, 991
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	571
PagI	TCATGA	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	1007
PflFI	GACNNNGTC	1 cut(s)	832
PkrI	GCNGC	5 cut(s)	231, 598, 601, 604, 627
PmaCI	CACGTG	2 cut(s)	238, 470
PmlI	CACGTG	2 cut(s)	238, 470
Ppu21I	YACGTR	2 cut(s)	238, 470
PpuMI	RGGWCCY	1 cut(s)	989
Psp124BI	GAGCTC	3 cut(s)	138, 168, 1056
Psp5II	RGGWCCY	1 cut(s)	989
Psp6I	CCWGG	2 cut(s)	123, 591
PspCI	CACGTG	2 cut(s)	238, 470
PspGI	CCWGG	2 cut(s)	123, 591
PspN4I	GGNNCC	2 cut(s)	990, 991
PspPI	GGNCC	1 cut(s)	989
PspPPI	RGGWCCY	1 cut(s)	989
PsyI	GACNNNGTC	1 cut(s)	832
RsaI	GTAC	2 cut(s)	1023, 1041
RsaNI	GTAC	2 cut(s)	1022, 1040
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	3 cut(s)	138, 168, 1056
SaqAI	TTAA	5 cut(s)	171, 302, 353, 578, 615
SatI	GCNGC	5 cut(s)	230, 597, 600, 603, 626
Sau3AI	GATC	2 cut(s)	934, 1026
Sau96I	GGNCC	1 cut(s)	989
ScrFI	CCNGG	2 cut(s)	125, 593
SduI	GDGCHC	4 cut(s)	138, 168, 698, 1056
SfaNI	GCATC	5 cut(s)	231, 393, 487, 720, 730
SfuI	TTCGAA	1 cut(s)	584
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	5 cut(s)	338, 579, 806, 854, 1016
SsiI	CCGC	1 cut(s)	832
SspMI	CTAG	3 cut(s)	536, 758, 938
SstI	GAGCTC	3 cut(s)	138, 168, 1056
StyD4I	CCNGG	2 cut(s)	123, 591
StyI	CCWWGG	1 cut(s)	1000
TaaI	ACNGT	5 cut(s)	84, 639, 652, 787, 901
TaiI	ACGT	3 cut(s)	240, 472, 934
TaqI	TCGA	2 cut(s)	395, 584
TasI	AATT	5 cut(s)	338, 579, 806, 854, 1016
TfiI	GAWTC	1 cut(s)	1007
Tru1I	TTAA	5 cut(s)	171, 302, 353, 578, 615
Tru9I	TTAA	5 cut(s)	171, 302, 353, 578, 615
TscAI	CASTG	5 cut(s)	719, 781, 885, 894, 906
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	5 cut(s)	229, 596, 599, 602, 625
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	2 cut(s)	326, 679
TspRI	CASTG	5 cut(s)	719, 781, 885, 894, 906
Tth111I	GACNNNGTC	1 cut(s)	832
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	989
XapI	RAATTY	3 cut(s)	806, 854, 1016
XceI	RCATGY	1 cut(s)	571
XspI	CTAG	3 cut(s)	536, 758, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.