Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

17573849 .. 17577627

Gene Structure 3779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGCTTTCTTTAAGGGGATTTTGGAGAAGGCATAGGAGGAAGTTGTATGTTACAGCTGGTGTTTTAGGAAGTGGATATCTTCTGTATAAACTGTATAATGCTCACAGACAAAGGCTTGCTGACCTGGATACCGAACTTGAGCATGAACGAGATAGAAACGAAGAGCTTATCAAGGCCCAAATGCAAGCCCATTTTGAGAACATACAAAGAATTGCTGATACAACAACGTTGCCTCATGCAATGCAATATTTAAATAGTCGGATAGCTGAAGAGTTAGACCTTTCTCACCTTACCGACAGGTTAATGCAAGCGAAGGGCCAATCAACATCTGCGGAGAAACTTGAATTATGGGATAGACTGAAAATTCTAAGTTTCACGAGAATGGTGTTGTCGTTGTGGGCAATGACGATCCTTAGCTTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATATATTGATACTGCCCGTGGTCTTGGAAGCTCTCTTTTAATTGAGGATGCTGATCTCATTCATAGGGATGACCAGCAGAAGTTTCTAGCAAGTTCTGATTATCTAGCCAGGTATGGCATGCCTGCTTTAATTTCAAACATCCAGGCAGCAGCAACAGAAGTTCTTAAGGGAAAGCAGCTAAGGGATTCCTTCAATGCCACAGTTCTTCATGCAACTGTCATGCAAATACTTGACAAGTTCATGAGCACAGGAGATCCCCATCACTGGGTGAACTACTTGATGCCAGAGGATGCTCGTGCACTTGAACTAGCCACTGCCTTCAGCAATGATAGCACACTTCTTCCAGATGTCACCAAATTTGAACAACTTATGGTGGAGACACGGGCAGTAATATCAAGTGCTGAATTTGGGAGTGTTGCTGACATAGCATTGAGAGCAGTGGTGGATACTGTGATAGTGGACATGGGTGCTCAACCCGGAGGAGTTCAACTTGCCAAAGTTTTGGCACGGGTTGCACGGATGGGTCCTACAGTCCTTGAAGAACCAAGCAAATTCATCCAAATCATTCTAAATGTACCAGAAGTTGAGCGCTTTTTCACTCTCATCTATTCAAGTATGCAAATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

363

Amino Acids

41.02

Weight (kDa)

6.27

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	332
AclI	AACGTT	1 cut(s)	227
AclWI	GGATC	2 cut(s)	403, 707
AcsI	RAATTY	4 cut(s)	363, 815, 863, 1010
AcuI	CTGAAG	2 cut(s)	288, 763
AdeI	CACNNNGTG	1 cut(s)	727
AfaI	GTAC	1 cut(s)	1035
AfeI	AGCGCT	1 cut(s)	1049
AfiI	CCNNNNNNNGG	2 cut(s)	723, 724
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	9 cut(s)	344, 434, 594, 652, 764, 821, 947, 998, 1071
AjnI	CCWGG	3 cut(s)	123, 566, 600
AluBI	AGCT	6 cut(s)	56, 166, 266, 417, 489, 637
AluI	AGCT	6 cut(s)	56, 166, 266, 417, 489, 637
Alw21I	GWGCWC	3 cut(s)	707, 760, 931
Alw26I	GTCTC	2 cut(s)	445, 830
Alw44I	GTGCAC	1 cut(s)	756
AlwI	GGATC	2 cut(s)	403, 707
Aor51HI	AGCGCT	1 cut(s)	1049
AoxI	GGCC	2 cut(s)	174, 316
ApaLI	GTGCAC	1 cut(s)	756
ApeKI	GCWGC	3 cut(s)	605, 608, 634
ApoI	RAATTY	4 cut(s)	363, 815, 863, 1010
AspLEI	GCGC	1 cut(s)	1050
AspS9I	GGNCC	3 cut(s)	175, 316, 983
AsuC2I	CCSGG	1 cut(s)	936
AsuHPI	GGTGA	3 cut(s)	278, 739, 802
AvaII	GGWCC	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	760
BauI	CACGAG	2 cut(s)	376, 753
Bbv12I	GWGCWC	3 cut(s)	707, 760, 931
BbvI	GCAGC	3 cut(s)	617, 620, 646
BccI	CCATC	2 cut(s)	726, 973
BciT130I	CCWGG	3 cut(s)	125, 568, 602
BciVI	GTATCC	2 cut(s)	121, 898
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	445, 830
BfaI	CTAG	3 cut(s)	545, 563, 767
BfmI	CTRYAG	1 cut(s)	987
BfoI	RGCGCY	1 cut(s)	1051
BfrI	CTTAAG	1 cut(s)	623
BfuI	GTATCC	2 cut(s)	121, 898
BisI	GCNGC	3 cut(s)	606, 609, 635
BlsI	GCNGC	3 cut(s)	607, 610, 636
Bme1390I	CCNGG	4 cut(s)	125, 568, 602, 936
Bme18I	GGWCC	1 cut(s)	983
BmgT120I	GGNCC	3 cut(s)	175, 316, 983
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	4 cut(s)	125, 568, 602, 936
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	3 cut(s)	496, 729, 739
BmuI	ACTGGG	1 cut(s)	733
Bpu10I	CCTNAGC	2 cut(s)	413, 638
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	936
BsaBI	GATNNNNATC	2 cut(s)	510, 717
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	723, 724
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	3 cut(s)	246, 408, 790
Bse8I	GATNNNNATC	2 cut(s)	510, 717
BseBI	CCWGG	3 cut(s)	125, 568, 602
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	6 cut(s)	511, 532, 597, 754, 984, 1014
BseJI	GATNNNNATC	2 cut(s)	510, 717
BseLI	CCNNNNNNNGG	2 cut(s)	723, 724
BseMI	GCAATG	3 cut(s)	246, 408, 790
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	954
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	3 cut(s)	617, 620, 646
BshFI	GGCC	2 cut(s)	176, 318
BsiHKAI	GWGCWC	3 cut(s)	707, 760, 931
BsiSI	CCGG	1 cut(s)	936
BslI	CCNNNNNNNGG	2 cut(s)	723, 724
BsmAI	GTCTC	2 cut(s)	445, 830
BsnI	GGCC	2 cut(s)	176, 318
Bsp1286I	GDGCHC	3 cut(s)	707, 760, 931
Bsp143I	GATC	3 cut(s)	408, 511, 712
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	176, 318
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	1 cut(s)	984
BspPI	GGATC	2 cut(s)	403, 707
BspQI	GCTCTTC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	623
BsrDI	GCAATG	3 cut(s)	246, 408, 790
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	3 cut(s)	408, 511, 712
BssSI	CACGAG	2 cut(s)	376, 753
Bst2BI	CACGAG	2 cut(s)	376, 753
Bst2UI	CCWGG	3 cut(s)	125, 568, 602
Bst4CI	ACNGT	5 cut(s)	93, 661, 676, 910, 991
Bst6I	CTCTTC	2 cut(s)	156, 264
BstAFI	CTTAAG	1 cut(s)	623
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstC8I	GCNNGC	5 cut(s)	117, 186, 309, 578, 582
BstDEI	CTNAG	3 cut(s)	368, 413, 638
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	6 cut(s)	511, 532, 597, 754, 984, 1014
BstH2I	RGCGCY	1 cut(s)	1051
BstHHI	GCGC	1 cut(s)	1050
BstKTI	GATC	3 cut(s)	411, 514, 715
BstMAI	GTCTC	2 cut(s)	445, 830
BstMBI	GATC	3 cut(s)	408, 511, 712
BstMWI	GCNNNNNNNGC	4 cut(s)	789, 884, 893, 971
BstNI	CCWGG	3 cut(s)	125, 568, 602
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	4 cut(s)	123, 566, 600, 934
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	3 cut(s)	617, 620, 646
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	712
BsuI	GTATCC	2 cut(s)	121, 898
BsuRI	GGCC	2 cut(s)	176, 318
BtgI	CCRYGG	1 cut(s)	475
BtsCI	GGATG	6 cut(s)	511, 532, 597, 754, 984, 1014
BtsI	GCAGTG	2 cut(s)	771, 903
BtsIMutI	CAGTG	3 cut(s)	721, 771, 903
Cac8I	GCNNGC	5 cut(s)	117, 186, 309, 578, 582
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	1 cut(s)	1050
Cfr13I	GGNCC	3 cut(s)	175, 316, 983
Csp6I	GTAC	1 cut(s)	1034
CviAII	CATG	7 cut(s)	143, 236, 577, 668, 679, 700, 922
CviQI	GTAC	1 cut(s)	1034
DdeI	CTNAG	3 cut(s)	368, 413, 638
DpnI	GATC	3 cut(s)	410, 513, 714
DpnII	GATC	3 cut(s)	408, 511, 712
DraI	TTTAAA	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	727
Eam1104I	CTCTTC	2 cut(s)	156, 264
EarI	CTCTTC	2 cut(s)	156, 264
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	983
Eco47III	AGCGCT	1 cut(s)	1049
Eco57I	CTGAAG	2 cut(s)	288, 763
EcoO109I	RGGNCCY	1 cut(s)	983
EcoRII	CCWGG	3 cut(s)	123, 566, 600
EcoRV	GATATC	1 cut(s)	77
FaeI	CATG	7 cut(s)	146, 239, 580, 671, 682, 703, 925
FatI	CATG	7 cut(s)	142, 235, 576, 667, 678, 699, 921
Fnu4HI	GCNGC	3 cut(s)	606, 609, 635
FokI	GGATG	6 cut(s)	518, 539, 584, 761, 991, 1001
Fsp4HI	GCNGC	3 cut(s)	606, 609, 635
FspBI	CTAG	3 cut(s)	545, 563, 767
GlaI	GCGC	1 cut(s)	1049
GluI	GCNGC	3 cut(s)	606, 609, 635
HaeII	RGCGCY	1 cut(s)	1051
HaeIII	GGCC	2 cut(s)	176, 318
HapII	CCGG	1 cut(s)	936
HhaI	GCGC	1 cut(s)	1050
Hin1II	CATG	7 cut(s)	146, 239, 580, 671, 682, 703, 925
Hin6I	GCGC	1 cut(s)	1048
HinP1I	GCGC	1 cut(s)	1048
HinfI	GANTC	1 cut(s)	644
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	3 cut(s)	278, 739, 802
Hpy166II	GTNNAC	3 cut(s)	730, 758, 919
Hpy188I	TCNGA	2 cut(s)	261, 556
Hpy188III	TCNNGA	3 cut(s)	376, 700, 803
Hpy8I	GTNNAC	3 cut(s)	730, 758, 919
HpyAV	CCTTC	4 cut(s)	21, 307, 658, 787
HpyCH4III	ACNGT	5 cut(s)	93, 661, 676, 910, 991
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	9 cut(s)	184, 239, 244, 307, 671, 682, 758, 974, 1078
HpyF10VI	GCNNNNNNNGC	4 cut(s)	789, 884, 893, 971
HpyF3I	CTNAG	3 cut(s)	368, 413, 638
HpySE526I	ACGT	1 cut(s)	227
Hsp92II	CATG	7 cut(s)	146, 239, 580, 671, 682, 703, 925
HspAI	GCGC	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	408, 511, 712
LguI	GCTCTTC	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	617, 620, 646
LweI	GCATC	3 cut(s)	496, 729, 739
MaeI	CTAG	3 cut(s)	545, 563, 767
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	49, 808
MalI	GATC	3 cut(s)	410, 513, 714
MboI	GATC	3 cut(s)	408, 511, 712
MboII	GAAGA	6 cut(s)	71, 173, 281, 656, 791, 1010
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	3 cut(s)	707, 760, 931
MluCI	AATT	8 cut(s)	210, 344, 363, 498, 588, 815, 863, 1010
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	30, 243, 496, 739, 932
MseI	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
MslI	CAYNNNNRTG	2 cut(s)	380, 525
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	4 cut(s)	125, 568, 602, 936
MvaI	CCWGG	3 cut(s)	125, 568, 602
MwoI	GCNNNNNNNGC	4 cut(s)	789, 884, 893, 971
NciI	CCSGG	1 cut(s)	936
NdeII	GATC	3 cut(s)	408, 511, 712
NlaIII	CATG	7 cut(s)	146, 239, 580, 671, 682, 703, 925
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	1 cut(s)	808
NspI	RCATGY	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	580
PagI	TCATGA	1 cut(s)	699
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	644
PkrI	GCNGC	3 cut(s)	607, 610, 636
PpuMI	RGGWCCY	1 cut(s)	983
Psp1406I	AACGTT	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	983
Psp6I	CCWGG	3 cut(s)	123, 566, 600
PspGI	CCWGG	3 cut(s)	123, 566, 600
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	3 cut(s)	175, 316, 983
PspPPI	RGGWCCY	1 cut(s)	983
PsuI	RGATCY	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	1035
RsaNI	GTAC	1 cut(s)	1034
RseI	CAYNNNNRTG	2 cut(s)	380, 525
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
SatI	GCNGC	3 cut(s)	606, 609, 635
Sau3AI	GATC	3 cut(s)	408, 511, 712
Sau96I	GGNCC	3 cut(s)	175, 316, 983
ScrFI	CCNGG	4 cut(s)	125, 568, 602, 936
SduI	GDGCHC	3 cut(s)	707, 760, 931
SfaNI	GCATC	3 cut(s)	496, 729, 739
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	983
SmiI	ATTTAAAT	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	380, 525
SmlI	CTYRAG	2 cut(s)	137, 623
SmoI	CTYRAG	2 cut(s)	137, 623
SphI	GCATGC	1 cut(s)	580
Sse9I	AATT	8 cut(s)	210, 344, 363, 498, 588, 815, 863, 1010
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	3 cut(s)	545, 563, 767
StyD4I	CCNGG	4 cut(s)	123, 566, 600, 934
SwaI	ATTTAAAT	1 cut(s)	252
TaaI	ACNGT	5 cut(s)	93, 661, 676, 910, 991
TaiI	ACGT	1 cut(s)	230
TasI	AATT	8 cut(s)	210, 344, 363, 498, 588, 815, 863, 1010
TfiI	GAWTC	1 cut(s)	644
Tru1I	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
Tru9I	TTAA	6 cut(s)	11, 251, 302, 497, 587, 624
TscAI	CASTG	3 cut(s)	728, 778, 903
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	3 cut(s)	605, 608, 634
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	5 cut(s)	159, 509, 656, 688, 1003
TspGWI	ACGGA	1 cut(s)	991
TspRI	CASTG	3 cut(s)	728, 778, 903
Vha464I	CTTAAG	1 cut(s)	623
VneI	GTGCAC	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	983
XapI	RAATTY	4 cut(s)	363, 815, 863, 1010
XceI	RCATGY	1 cut(s)	580
XspI	CTAG	3 cut(s)	545, 563, 767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.