Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

66222272 .. 66225202

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00274600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCATTTGTGATATCAGGGGGCTTTTGGAGGAGGCATAGGAGGAAGGTGCTTGTTGCAACTGGTGTGTTAGGAGGTGGATATGTACTGTATAAACTATATAATGCTCACAGACAGAGGCTTACTGACCTGGAGGCCGAACTCGCCCGTGAACAAGAGAGCAGTGAGGAGCTCCTTAAGGCTAAAATGCAAGCTCATTTTGAGAACATTCAAAGCATTGCTGATACAACAACGCTGCCTCACGTGATGCACTATTTGAGTAGTCGGATAGCAGAAGAGTTAGATACTACTTATATCACCGAAAGGTTAATGCAAATGAAGGGGAAGTCTCCAGAGAAACTTGAATTGTGGGATAGATTAAAAGAGGATGCTGAACTCATTGATAGGGATGACCAGCAGAAGTTTCTAGCAAGTTCTGATTATCTCTCCAGTTATGGCATGCCTGCTTTAATTTCGAATATCCAGGCAGCAGCAGCAGAAGTTCTTAATGGAAAGCAGCTAACTGAACGGTTCAATACCACGGTTCTCCATGATACTATTATGCAAATGCTTGACAAGTTCATGAGCACAGGAAGTCCCCATCACTGGGTGAACTACTTGATGCCAGAGGATGCTCGTTGGGTTGAACTAGCGACTGCCTTCAGCAGTGATAGCACAGTTCTTCCGGATGTCACCAAATTTGAACAACTTATGCTGGAGACGCGGTCAGTAATATCAAGTGGTGAATTTGGTAGTATTGCTCAGATGGCACTGAGAGCAGTGGTGGATACAGTGGTAGTGGATATGGGCGCTCAATCTGGAGGTGATCTAGCGTCCGGAACGCCCCTTGCCAAAGTTTTGGCAAGAGTTGCACAGATGGGTCCCGCACTCCTTGGAGAATCAAGCAAATTCGTACAGATCATTCTAAATGTACCAGAAGTTGAGCTCTTTTTTACTCTCATCTATTCACATATGCAAATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

321

Amino Acids

35.94

Weight (kDa)

5.33

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peroxin-3	PF04882	9 - 110	2.6e-07	Peroxin-3
Peroxin-3	PF04882	122 - 316	7.6e-09	Peroxin-3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	703
AccIII	TCCGGA	2 cut(s)	664, 815
AciI	CCGC	2 cut(s)	703, 864
AcsI	RAATTY	3 cut(s)	677, 725, 887
AcuI	CTGAAG	1 cut(s)	625
AcvI	CACGTG	1 cut(s)	244
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	3 cut(s)	87, 894, 912
AfiI	CCNNNNNNNGG	2 cut(s)	585, 586
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	5 cut(s)	212, 344, 514, 626, 683
AjnI	CCWGG	2 cut(s)	129, 462
AluBI	AGCT	4 cut(s)	172, 194, 499, 925
AluI	AGCT	4 cut(s)	172, 194, 499, 925
Alw21I	GWGCWC	3 cut(s)	174, 569, 927
Alw26I	GTCTC	2 cut(s)	333, 692
Aor13HI	TCCGGA	2 cut(s)	664, 815
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	5 cut(s)	235, 467, 470, 473, 496
ApoI	RAATTY	3 cut(s)	677, 725, 887
AspLEI	GCGC	1 cut(s)	791
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	5 cut(s)	289, 601, 664, 734, 815
AsuII	TTCGAA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	860
BaeI	ACNNNNGTAYC	2 cut(s)	759, 792
BanII	GRGCYC	2 cut(s)	174, 927
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	3 cut(s)	174, 569, 927
BbvI	GCAGC	5 cut(s)	222, 479, 482, 485, 508
BccI	CCATC	3 cut(s)	588, 739, 850
BciT130I	CCWGG	2 cut(s)	131, 464
BciVI	GTATCC	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	333, 692
BfaI	CTAG	3 cut(s)	407, 629, 809
BfoI	RGCGCY	1 cut(s)	792
BfrI	CTTAAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	760
BisI	GCNGC	5 cut(s)	236, 468, 471, 474, 497
BlsI	GCNGC	5 cut(s)	237, 469, 472, 475, 498
Bme1390I	CCNGG	2 cut(s)	131, 464
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	2 cut(s)	861, 862
BmrFI	CCNGG	2 cut(s)	131, 464
BmrI	ACTGGG	1 cut(s)	595
BmsI	GCATC	4 cut(s)	237, 358, 591, 601
BmuI	ACTGGG	1 cut(s)	595
BpmI	CTGGAG	5 cut(s)	152, 315, 412, 716, 819
Bpu14I	TTCGAA	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	519, 871
BsaWI	WCCGGW	2 cut(s)	664, 815
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 586
Bse1I	ACTGG	3 cut(s)	67, 429, 590
Bse3DI	GCAATG	1 cut(s)	216
BseAI	TCCGGA	2 cut(s)	664, 815
BseBI	CCWGG	2 cut(s)	131, 464
BseDI	CCNNGG	2 cut(s)	519, 871
BseGI	GGATG	4 cut(s)	373, 394, 616, 673
BseLI	CCNNNNNNNGG	2 cut(s)	585, 586
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	743, 755
BseNI	ACTGG	3 cut(s)	67, 429, 590
BseRI	GAGGAG	2 cut(s)	46, 182
BseXI	GCAGC	5 cut(s)	222, 479, 482, 485, 508
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	3 cut(s)	174, 569, 927
BsiSI	CCGG	2 cut(s)	665, 816
BslFI	GGGAC	2 cut(s)	561, 846
BslI	CCNNNNNNNGG	2 cut(s)	585, 586
BsmAI	GTCTC	2 cut(s)	333, 692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	2 cut(s)	561, 846
BsnI	GGCC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	455
Bsp1286I	GDGCHC	3 cut(s)	174, 569, 927
Bsp13I	TCCGGA	2 cut(s)	664, 815
Bsp143I	GATC	2 cut(s)	805, 897
BspACI	CCGC	2 cut(s)	703, 864
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	744, 754
BspEI	TCCGGA	2 cut(s)	664, 815
BspFNI	CGCG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	861, 862
BspT104I	TTCGAA	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	67, 429, 590
BssECI	CCNNGG	2 cut(s)	519, 871
BssMI	GATC	2 cut(s)	805, 897
BssT1I	CCWWGG	1 cut(s)	871
Bst2UI	CCWGG	2 cut(s)	131, 464
Bst4CI	ACNGT	5 cut(s)	90, 510, 523, 658, 772
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstBAI	YACGTR	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	192, 440, 444
BstDEI	CTNAG	2 cut(s)	741, 752
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	4 cut(s)	373, 394, 616, 673
BstFNI	CGCG	1 cut(s)	703
BstH2I	RGCGCY	1 cut(s)	792
BstHHI	GCGC	1 cut(s)	791
BstKTI	GATC	2 cut(s)	808, 900
BstMAI	GTCTC	2 cut(s)	333, 692
BstMBI	GATC	2 cut(s)	805, 897
BstMWI	GCNNNNNNNGC	7 cut(s)	143, 473, 651, 700, 746, 755, 848
BstNI	CCWGG	2 cut(s)	131, 464
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	129, 462
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	5 cut(s)	222, 479, 482, 485, 508
BstXI	CCANNNNNNTGG	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	519
BtsCI	GGATG	4 cut(s)	373, 394, 616, 673
BtsI	GCAGTG	3 cut(s)	169, 652, 765
BtsIMutI	CAGTG	6 cut(s)	169, 583, 652, 749, 765, 777
Cac8I	GCNNGC	3 cut(s)	192, 440, 444
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	860
CseI	GACGC	2 cut(s)	709, 801
Csp6I	GTAC	3 cut(s)	86, 893, 911
CviAII	CATG	3 cut(s)	439, 530, 562
CviJI	RGCY	8 cut(s)	24, 121, 137, 172, 182, 194, 499, 925
CviKI_1	RGCY	8 cut(s)	24, 121, 137, 172, 182, 194, 499, 925
CviQI	GTAC	3 cut(s)	86, 893, 911
DdeI	CTNAG	2 cut(s)	741, 752
DpnI	GATC	2 cut(s)	807, 899
DpnII	GATC	2 cut(s)	805, 897
DraIII	CACNNNGTG	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Ecl136II	GAGCTC	2 cut(s)	172, 925
Eco130I	CCWWGG	1 cut(s)	871
Eco24I	GRGCYC	2 cut(s)	174, 927
Eco32I	GATATC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	2 cut(s)	172, 925
Eco57I	CTGAAG	1 cut(s)	625
Eco72I	CACGTG	1 cut(s)	244
EcoICRI	GAGCTC	2 cut(s)	172, 925
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	129, 462
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	871
EcoT38I	GRGCYC	2 cut(s)	174, 927
ErhI	CCWWGG	1 cut(s)	871
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	3 cut(s)	442, 533, 565
FaqI	GGGAC	2 cut(s)	561, 846
FatI	CATG	3 cut(s)	438, 529, 561
FauI	CCCGC	1 cut(s)	871
FauNDI	CATATG	1 cut(s)	951
Fnu4HI	GCNGC	5 cut(s)	236, 468, 471, 474, 497
FokI	GGATG	4 cut(s)	380, 401, 623, 680
FriOI	GRGCYC	2 cut(s)	174, 927
Fsp4HI	GCNGC	5 cut(s)	236, 468, 471, 474, 497
FspBI	CTAG	3 cut(s)	407, 629, 809
GlaI	GCGC	1 cut(s)	790
GluI	GCNGC	5 cut(s)	236, 468, 471, 474, 497
GsuI	CTGGAG	5 cut(s)	152, 315, 412, 716, 819
HaeII	RGCGCY	1 cut(s)	792
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	665, 816
HgaI	GACGC	2 cut(s)	709, 801
HhaI	GCGC	1 cut(s)	791
Hin1II	CATG	3 cut(s)	442, 533, 565
Hin6I	GCGC	1 cut(s)	789
HinP1I	GCGC	1 cut(s)	789
HinfI	GANTC	1 cut(s)	878
HpaII	CCGG	2 cut(s)	665, 816
HphI	GGTGA	5 cut(s)	289, 601, 664, 734, 815
Hpy166II	GTNNAC	2 cut(s)	152, 592
Hpy188I	TCNGA	3 cut(s)	267, 418, 744
Hpy188III	TCNNGA	5 cut(s)	332, 562, 665, 798, 816
Hpy8I	GTNNAC	2 cut(s)	152, 592
HpyAV	CCTTC	3 cut(s)	40, 313, 649
HpyCH4III	ACNGT	5 cut(s)	90, 510, 523, 658, 772
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	7 cut(s)	59, 190, 250, 313, 544, 851, 955
HpyF10VI	GCNNNNNNNGC	7 cut(s)	143, 473, 651, 700, 746, 755, 848
HpyF3I	CTNAG	2 cut(s)	741, 752
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	442, 533, 565
HspAI	GCGC	1 cut(s)	789
KflI	GGGWCCC	1 cut(s)	860
Kpn2I	TCCGGA	2 cut(s)	664, 815
Kzo9I	GATC	2 cut(s)	805, 897
LmnI	GCTCC	2 cut(s)	169, 177
Lsp1109I	GCAGC	5 cut(s)	222, 479, 482, 485, 508
LweI	GCATC	4 cut(s)	237, 358, 591, 601
MaeI	CTAG	3 cut(s)	407, 629, 809
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	2 cut(s)	807, 899
MboI	GATC	2 cut(s)	805, 897
MboII	GAAGA	2 cut(s)	287, 653
MhlI	GDGCHC	3 cut(s)	174, 569, 927
MluCI	AATT	5 cut(s)	344, 450, 677, 725, 887
MmeI	TCCRAC	1 cut(s)	245
MroI	TCCGGA	2 cut(s)	664, 815
MseI	TTAA	5 cut(s)	177, 308, 359, 449, 486
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	2 cut(s)	665, 816
MspR9I	CCNGG	2 cut(s)	131, 464
MvaI	CCWGG	2 cut(s)	131, 464
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	7 cut(s)	143, 473, 651, 700, 746, 755, 848
NdeI	CATATG	1 cut(s)	951
NdeII	GATC	2 cut(s)	805, 897
NlaIII	CATG	3 cut(s)	442, 533, 565
NlaIV	GGNNCC	2 cut(s)	861, 862
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	1 cut(s)	442
NspV	TTCGAA	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	442
PagI	TCATGA	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	878
PflFI	GACNNNGTC	1 cut(s)	703
PkrI	GCNGC	5 cut(s)	237, 469, 472, 475, 498
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	860
Psp124BI	GAGCTC	2 cut(s)	174, 927
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	129, 462
PspCI	CACGTG	1 cut(s)	244
PspGI	CCWGG	2 cut(s)	129, 462
PspN4I	GGNNCC	2 cut(s)	861, 862
PspPI	GGNCC	1 cut(s)	860
PspPPI	RGGWCCY	1 cut(s)	860
PsyI	GACNNNGTC	1 cut(s)	703
RsaI	GTAC	3 cut(s)	87, 894, 912
RsaNI	GTAC	3 cut(s)	86, 893, 911
SacI	GAGCTC	2 cut(s)	174, 927
SaqAI	TTAA	5 cut(s)	177, 308, 359, 449, 486
SatI	GCNGC	5 cut(s)	236, 468, 471, 474, 497
Sau3AI	GATC	2 cut(s)	805, 897
Sau96I	GGNCC	1 cut(s)	860
ScrFI	CCNGG	2 cut(s)	131, 464
SduI	GDGCHC	3 cut(s)	174, 569, 927
SfaNI	GCATC	4 cut(s)	237, 358, 591, 601
SfuI	TTCGAA	1 cut(s)	455
SinI	GGWCC	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	5 cut(s)	344, 450, 677, 725, 887
SsiI	CCGC	2 cut(s)	703, 864
SspMI	CTAG	3 cut(s)	407, 629, 809
SstI	GAGCTC	2 cut(s)	174, 927
StyD4I	CCNGG	2 cut(s)	129, 462
StyI	CCWWGG	1 cut(s)	871
TaaI	ACNGT	5 cut(s)	90, 510, 523, 658, 772
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	455
TasI	AATT	5 cut(s)	344, 450, 677, 725, 887
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	878
Tru1I	TTAA	5 cut(s)	177, 308, 359, 449, 486
Tru9I	TTAA	5 cut(s)	177, 308, 359, 449, 486
TscAI	CASTG	6 cut(s)	169, 590, 652, 756, 765, 777
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	5 cut(s)	235, 467, 470, 473, 496
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	332, 550
TspRI	CASTG	6 cut(s)	169, 590, 652, 756, 765, 777
Tth111I	GACNNNGTC	1 cut(s)	703
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	3 cut(s)	677, 725, 887
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	3 cut(s)	407, 629, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.