Rh7DG019000

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008455
Physical Location & Seq
Forward (+)
1535101 .. 1538862
3762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG019000.1

Sequence Viewer

Length: 1101 bp
ATGCTCACAGACAGAGGCTTACTGACCTGGAGGCCGAGCTCGCCCGTGAACAAGAGAGCAGTGAGGAGCTCCTTAAGGCTAAGTAAATACCGAACCCTGTTTCGTTTTCTTGTTGTGATTTGTGGATTGTTGAGTCCATGGCTGCTTACTCTCATGTTATGTCTCTTTCTTCACGTTGATAGAATGCAAGCTCATTTTGAGAACATTCAAAGCATTGCTGATACAACAACGCTGCCTCACGTGATGCACTATTTGAGTAGTCGGATAGCAGAAGAGTTAGATACTACTTATATCACCGAAAGGTTAATGCAAATGAAGGGGAAGTCTCCAGAGAAACTTGAATTGTGGGATAGATTAAAAGTTCTAAGCTTCACAAGAATGGTGTTGTCGTTGTGGTCGATGACGATGCTTAGCTTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATACATTGATACTGCACGTGGTTTTGGAAGCTCTCTTATAGTTGAGGATGCTGAACTCATTGATAGGGATGACCAGCAGAAGTTTCTAGCAAGTTCTGATTATCTCTCCAGTTATGGCATGCCTGCTTTAATTTCGAATATCCAGGCAGCAGCAGCAGAAGTTCTTAATGGAAAGCAGCTAACTGAACGGTTCAATACCACGGTTCTCCATGATACTATTATGCAAATGCTTGACAAGTTCATGAGCACAGGAAGTCCCCATCACTGGGTGAACTACTTGATGCCAGAGGATGCTCGTTGGGTTGAACTAGCGACTGCCTTCAGCAGTGATAGCACAGTTCTTCCGGATGTCACCAAATTTGAACAACTTATGCTGGAGACGCGGTCAGTAATATCAAGTGGTGAATTTGGTAGTATTGCTCAGATGGCACTGAGAGCAGTGGTGGATACAGTGGTAGTGGATATGGGCGCTCAATCTGGAGGTGATCTAGCGTCCGGAACGCCCCTTGCCAAAGTTTTGGCAAGAGTTGCACAGATGGGTCCCACACTCCTTGGAGAATCAAGCAAATTCGTACAGATCATTCTAAATGTACCAGAAGTTGAGCTCTTTTTTACTCTCATCTATTCACATATGCAAATCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Peroxin-3

Protein Analysis

366

Amino Acids

41.25

Weight (kDa)

6.15

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peroxin-3 PF04882 111 - 361 5.5e-21 Peroxin-3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 838
AccIII TCCGGA 2 cut(s) 799, 950
AciI CCGC 1 cut(s) 838
AcsI RAATTY 3 cut(s) 812, 860, 1022
AcuI CTGAAG 1 cut(s) 760
AcvI CACGTG 2 cut(s) 241, 473
AdeI CACNNNGTG 1 cut(s) 724
AfaI GTAC 2 cut(s) 1029, 1047
AfiI CCNNNNNNNGG 2 cut(s) 720, 721
AflII CTTAAG 1 cut(s) 73
AgsI TTSAA 6 cut(s) 209, 341, 431, 649, 761, 818
AjnI CCWGG 2 cut(s) 26, 597
AluBI AGCT 8 cut(s) 39, 69, 191, 369, 414, 486, 634, 1060
AluI AGCT 8 cut(s) 39, 69, 191, 369, 414, 486, 634, 1060
Alw21I GWGCWC 4 cut(s) 41, 71, 704, 1062
Alw26I GTCTC 4 cut(s) 167, 330, 442, 827
Aor13HI TCCGGA 2 cut(s) 799, 950
AoxI GGCC 1 cut(s) 32
ApeKI GCWGC 6 cut(s) 142, 232, 602, 605, 608, 631
ApoI RAATTY 3 cut(s) 812, 860, 1022
AspLEI GCGC 1 cut(s) 926
AspS9I GGNCC 1 cut(s) 995
AsuHPI GGTGA 5 cut(s) 286, 736, 799, 869, 950
AsuII TTCGAA 1 cut(s) 590
AvaII GGWCC 1 cut(s) 995
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanII GRGCYC 3 cut(s) 41, 71, 1062
BbrPI CACGTG 2 cut(s) 241, 473
Bbv12I GWGCWC 4 cut(s) 41, 71, 704, 1062
BbvI GCAGC 6 cut(s) 129, 219, 614, 617, 620, 643
BccI CCATC 3 cut(s) 723, 874, 985
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BciT130I CCWGG 2 cut(s) 28, 599
BciVI GTATCC 1 cut(s) 895
BcoDI GTCTC 4 cut(s) 167, 330, 442, 827
BfaI CTAG 3 cut(s) 542, 764, 944
BfoI RGCGCY 1 cut(s) 927
BfrI CTTAAG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 895
BisI GCNGC 6 cut(s) 143, 233, 603, 606, 609, 632
BlpI GCTNAGC 1 cut(s) 410
BlsI GCNGC 6 cut(s) 144, 234, 604, 607, 610, 633
Bme1390I CCNGG 2 cut(s) 28, 599
Bme18I GGWCC 1 cut(s) 995
BmgT120I GGNCC 1 cut(s) 995
BmiI GGNNCC 2 cut(s) 996, 997
BmrFI CCNGG 2 cut(s) 28, 599
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 5 cut(s) 234, 396, 493, 726, 736
BmuI ACTGGG 1 cut(s) 730
BpmI CTGGAG 5 cut(s) 49, 312, 547, 851, 954
Bpu1102I GCTNAGC 1 cut(s) 410
Bpu14I TTCGAA 1 cut(s) 590
BsaAI YACGTR 2 cut(s) 241, 473
BsaJI CCNNGG 3 cut(s) 137, 654, 1006
BsaWI WCCGGW 2 cut(s) 799, 950
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 721
Bse1I ACTGG 2 cut(s) 564, 725
Bse3DI GCAATG 1 cut(s) 213
BseAI TCCGGA 2 cut(s) 799, 950
BseBI CCWGG 2 cut(s) 28, 599
BseDI CCNNGG 3 cut(s) 137, 654, 1006
BseGI GGATG 4 cut(s) 508, 529, 751, 808
BseLI CCNNNNNNNGG 2 cut(s) 720, 721
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 878, 890
BseNI ACTGG 2 cut(s) 564, 725
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 6 cut(s) 129, 219, 614, 617, 620, 643
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 838
BshFI GGCC 1 cut(s) 34
BsiHKAI GWGCWC 4 cut(s) 41, 71, 704, 1062
BsiSI CCGG 2 cut(s) 800, 951
BslFI GGGAC 2 cut(s) 696, 981
BslI CCNNNNNNNGG 2 cut(s) 720, 721
BsmAI GTCTC 4 cut(s) 167, 330, 442, 827
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 2 cut(s) 696, 981
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 590
Bsp1286I GDGCHC 4 cut(s) 41, 71, 704, 1062
Bsp13I TCCGGA 2 cut(s) 799, 950
Bsp143I GATC 2 cut(s) 940, 1032
Bsp1720I GCTNAGC 1 cut(s) 410
Bsp19I CCATGG 1 cut(s) 137
BspACI CCGC 1 cut(s) 838
BspANI GGCC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 879, 889
BspEI TCCGGA 2 cut(s) 799, 950
BspFNI CGCG 1 cut(s) 838
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 996, 997
BspT104I TTCGAA 1 cut(s) 590
BspTI CTTAAG 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 2 cut(s) 564, 725
BssECI CCNNGG 3 cut(s) 137, 654, 1006
BssMI GATC 2 cut(s) 940, 1032
BssT1I CCWWGG 2 cut(s) 137, 1006
Bst2UI CCWGG 2 cut(s) 28, 599
Bst4CI ACNGT 4 cut(s) 645, 658, 793, 907
Bst6I CTCTTC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 983
BstBAI YACGTR 2 cut(s) 241, 473
BstBI TTCGAA 1 cut(s) 590
BstC8I GCNNGC 4 cut(s) 41, 189, 575, 579
BstDEI CTNAG 5 cut(s) 80, 365, 410, 876, 887
BstDSI CCRYGG 2 cut(s) 137, 654
BstF5I GGATG 4 cut(s) 508, 529, 751, 808
BstFNI CGCG 1 cut(s) 838
BstH2I RGCGCY 1 cut(s) 927
BstHHI GCGC 1 cut(s) 926
BstKTI GATC 2 cut(s) 943, 1035
BstMAI GTCTC 4 cut(s) 167, 330, 442, 827
BstMBI GATC 2 cut(s) 940, 1032
BstMWI GCNNNNNNNGC 7 cut(s) 40, 608, 786, 835, 881, 890, 983
BstNI CCWGG 2 cut(s) 28, 599
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 2 cut(s) 26, 597
BstUI CGCG 1 cut(s) 838
BstV1I GCAGC 6 cut(s) 129, 219, 614, 617, 620, 643
BstXI CCANNNNNNTGG 1 cut(s) 973
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 1 cut(s) 34
BtgI CCRYGG 2 cut(s) 137, 654
BtsCI GGATG 4 cut(s) 508, 529, 751, 808
BtsI GCAGTG 3 cut(s) 66, 787, 900
BtsIMutI CAGTG 6 cut(s) 66, 718, 787, 884, 900, 912
Cac8I GCNNGC 4 cut(s) 41, 189, 575, 579
CciI TCATGA 1 cut(s) 696
CfoI GCGC 1 cut(s) 926
Cfr13I GGNCC 1 cut(s) 995
CseI GACGC 2 cut(s) 844, 936
Csp6I GTAC 2 cut(s) 1028, 1046
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 5 cut(s) 138, 154, 574, 665, 697
CviQI GTAC 2 cut(s) 1028, 1046
DdeI CTNAG 5 cut(s) 80, 365, 410, 876, 887
DpnI GATC 2 cut(s) 942, 1034
DpnII GATC 2 cut(s) 940, 1032
DraIII CACNNNGTG 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Ecl136II GAGCTC 3 cut(s) 39, 69, 1060
Eco130I CCWWGG 2 cut(s) 137, 1006
Eco24I GRGCYC 3 cut(s) 41, 71, 1062
Eco47I GGWCC 1 cut(s) 995
Eco53kI GAGCTC 3 cut(s) 39, 69, 1060
Eco57I CTGAAG 1 cut(s) 760
Eco72I CACGTG 2 cut(s) 241, 473
EcoICRI GAGCTC 3 cut(s) 39, 69, 1060
EcoO109I RGGNCCY 1 cut(s) 995
EcoRII CCWGG 2 cut(s) 26, 597
EcoT14I CCWWGG 2 cut(s) 137, 1006
EcoT38I GRGCYC 3 cut(s) 41, 71, 1062
ErhI CCWWGG 2 cut(s) 137, 1006
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 5 cut(s) 141, 157, 577, 668, 700
FaqI GGGAC 2 cut(s) 696, 981
FatI CATG 5 cut(s) 137, 153, 573, 664, 696
FauNDI CATATG 1 cut(s) 1086
Fnu4HI GCNGC 6 cut(s) 143, 233, 603, 606, 609, 632
FokI GGATG 4 cut(s) 515, 536, 758, 815
FriOI GRGCYC 3 cut(s) 41, 71, 1062
Fsp4HI GCNGC 6 cut(s) 143, 233, 603, 606, 609, 632
FspBI CTAG 3 cut(s) 542, 764, 944
GlaI GCGC 1 cut(s) 925
GluI GCNGC 6 cut(s) 143, 233, 603, 606, 609, 632
GsuI CTGGAG 5 cut(s) 49, 312, 547, 851, 954
HaeII RGCGCY 1 cut(s) 927
HaeIII GGCC 1 cut(s) 34
HapII CCGG 2 cut(s) 800, 951
HgaI GACGC 2 cut(s) 844, 936
HhaI GCGC 1 cut(s) 926
Hin1II CATG 5 cut(s) 141, 157, 577, 668, 700
Hin6I GCGC 1 cut(s) 924
HinP1I GCGC 1 cut(s) 924
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 2 cut(s) 133, 1013
HpaII CCGG 2 cut(s) 800, 951
HphI GGTGA 5 cut(s) 286, 736, 799, 869, 950
Hpy166II GTNNAC 2 cut(s) 49, 727
Hpy188I TCNGA 3 cut(s) 264, 553, 879
Hpy188III TCNNGA 5 cut(s) 329, 697, 800, 933, 951
Hpy8I GTNNAC 2 cut(s) 49, 727
HpyAV CCTTC 2 cut(s) 310, 784
HpyCH4III ACNGT 4 cut(s) 645, 658, 793, 907
HpyCH4IV ACGT 3 cut(s) 174, 240, 472
HpyCH4V TGCA 7 cut(s) 187, 247, 310, 470, 679, 986, 1090
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 608, 786, 835, 881, 890, 983
HpyF3I CTNAG 5 cut(s) 80, 365, 410, 876, 887
HpySE526I ACGT 3 cut(s) 174, 240, 472
Hsp92II CATG 5 cut(s) 141, 157, 577, 668, 700
HspAI GCGC 1 cut(s) 924
KflI GGGWCCC 1 cut(s) 995
Kpn2I TCCGGA 2 cut(s) 799, 950
Kzo9I GATC 2 cut(s) 940, 1032
LmnI GCTCC 2 cut(s) 66, 74
Lsp1109I GCAGC 6 cut(s) 129, 219, 614, 617, 620, 643
LweI GCATC 5 cut(s) 234, 396, 493, 726, 736
MaeI CTAG 3 cut(s) 542, 764, 944
MaeII ACGT 3 cut(s) 174, 240, 472
MaeIII GTNAC 1 cut(s) 805
MalI GATC 2 cut(s) 942, 1034
MboI GATC 2 cut(s) 940, 1032
MboII GAAGA 3 cut(s) 161, 284, 788
MhlI GDGCHC 4 cut(s) 41, 71, 704, 1062
MluCI AATT 5 cut(s) 341, 585, 812, 860, 1022
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 7 cut(s) 8, 24, 57, 246, 493, 736, 929
MroI TCCGGA 2 cut(s) 799, 950
MseI TTAA 5 cut(s) 74, 305, 356, 584, 621
MslI CAYNNNNRTG 1 cut(s) 377
MspCI CTTAAG 1 cut(s) 73
MspI CCGG 2 cut(s) 800, 951
MspR9I CCNGG 2 cut(s) 28, 599
Mva1269I GAATGC 1 cut(s) 189
MvaI CCWGG 2 cut(s) 28, 599
MvnI CGCG 1 cut(s) 838
MwoI GCNNNNNNNGC 7 cut(s) 40, 608, 786, 835, 881, 890, 983
NcoI CCATGG 1 cut(s) 137
NdeI CATATG 1 cut(s) 1086
NdeII GATC 2 cut(s) 940, 1032
NlaIII CATG 5 cut(s) 141, 157, 577, 668, 700
NlaIV GGNNCC 2 cut(s) 996, 997
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 577
NspV TTCGAA 1 cut(s) 590
PaeI GCATGC 1 cut(s) 577
PagI TCATGA 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PctI GAATGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 1013
PflFI GACNNNGTC 1 cut(s) 838
PkrI GCNGC 6 cut(s) 144, 234, 604, 607, 610, 633
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 2 cut(s) 241, 473
PmlI CACGTG 2 cut(s) 241, 473
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 2 cut(s) 241, 473
PpuMI RGGWCCY 1 cut(s) 995
Psp124BI GAGCTC 3 cut(s) 41, 71, 1062
Psp5II RGGWCCY 1 cut(s) 995
Psp6I CCWGG 2 cut(s) 26, 597
PspCI CACGTG 2 cut(s) 241, 473
PspGI CCWGG 2 cut(s) 26, 597
PspN4I GGNNCC 2 cut(s) 996, 997
PspPI GGNCC 1 cut(s) 995
PspPPI RGGWCCY 1 cut(s) 995
PsyI GACNNNGTC 1 cut(s) 838
RsaI GTAC 2 cut(s) 1029, 1047
RsaNI GTAC 2 cut(s) 1028, 1046
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 3 cut(s) 41, 71, 1062
SaqAI TTAA 5 cut(s) 74, 305, 356, 584, 621
SatI GCNGC 6 cut(s) 143, 233, 603, 606, 609, 632
Sau3AI GATC 2 cut(s) 940, 1032
Sau96I GGNCC 1 cut(s) 995
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 28, 599
SduI GDGCHC 4 cut(s) 41, 71, 704, 1062
SfaNI GCATC 5 cut(s) 234, 396, 493, 726, 736
SfuI TTCGAA 1 cut(s) 590
SinI GGWCC 1 cut(s) 995
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
SphI GCATGC 1 cut(s) 577
Sse9I AATT 5 cut(s) 341, 585, 812, 860, 1022
SsiI CCGC 1 cut(s) 838
SspMI CTAG 3 cut(s) 542, 764, 944
SstI GAGCTC 3 cut(s) 41, 71, 1062
StyD4I CCNGG 2 cut(s) 26, 597
StyI CCWWGG 2 cut(s) 137, 1006
TaaI ACNGT 4 cut(s) 645, 658, 793, 907
TaiI ACGT 3 cut(s) 177, 243, 475
TaqI TCGA 2 cut(s) 398, 590
TasI AATT 5 cut(s) 341, 585, 812, 860, 1022
TfiI GAWTC 1 cut(s) 1013
Tru1I TTAA 5 cut(s) 74, 305, 356, 584, 621
Tru9I TTAA 5 cut(s) 74, 305, 356, 584, 621
TscAI CASTG 6 cut(s) 66, 725, 787, 891, 900, 912
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 6 cut(s) 142, 232, 602, 605, 608, 631
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 2 cut(s) 329, 685
TspRI CASTG 6 cut(s) 66, 725, 787, 891, 900, 912
Tth111I GACNNNGTC 1 cut(s) 838
Vha464I CTTAAG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 995
XapI RAATTY 3 cut(s) 812, 860, 1022
XceI RCATGY 1 cut(s) 577
XspI CTAG 3 cut(s) 542, 764, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.