Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

23209687 .. 23211836

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTTTCTTTAAGGGGATTTTGGAGAAGGCATAAGAGGAAGGTTTTGGTTGCAACTGGTGTTTTAGGAAGTGGTTATCTTCTGTACAAATTATACAATGCTCACAAACAAAGGCTTGTTGACCTAGAGACTGAACTCGAGCACGAGCGAGAGAAAAACGATGAGCTCATCAAGGCTCAAATGCAGGCCCATTTTGAAAACATACAAAGAATTGCTGACACAACTACACTGCCTCATGCTATGTACTATTTAAGTAGTCGGATAGCGGAAGAGTTGGACCTTTCTCACCTTACTGAGAGGTTAATGCAAGTGAAGGGGCAACCGACATCTCAAGAGAAACTTGAGTTATGGGATAGACTGAAAATTCTAAGTTTCACGAGAATGGTGTTGTCGCTGTGGGCAATGACGATCGTTAGCTTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATATATTGATACTGCACGAGGTCTTGGGAGCTCTCTTTTAATTGAGGATGCTGATCGATCATTCATAGGGATGACCAGCAGAAGTTTCTCGCAAGTTCTGATTATCTCGCCAGTAATGCCTTGCCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

197

Amino Acids

22.73

Weight (kDa)

9.24

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peroxin-3	PF04882	7 - 110	3.5e-06	Peroxin-3
Peroxin-3	PF04882	107 - 159	2.7e-12	Peroxin-3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	2 cut(s)	86, 245
AgsI	TTSAA	2 cut(s)	197, 434
AluBI	AGCT	3 cut(s)	166, 417, 489
AluI	AGCT	3 cut(s)	166, 417, 489
Alw21I	GWGCWC	3 cut(s)	144, 168, 491
Alw26I	GTCTC	2 cut(s)	122, 445
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	187, 277
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	277
BanII	GRGCYC	2 cut(s)	168, 491
BauI	CACGAG	3 cut(s)	143, 376, 474
Bbv12I	GWGCWC	3 cut(s)	144, 168, 491
BcoDI	GTCTC	2 cut(s)	122, 445
BfaI	CTAG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	187, 277
BmsI	GCATC	1 cut(s)	496
BpuEI	CTTGAG	2 cut(s)	315, 362
Bsa29I	ATCGAT	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	61, 569
Bse3DI	GCAATG	1 cut(s)	408
Bse8I	GATNNNNATC	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	514
BseGI	GGATG	2 cut(s)	511, 534
BseJI	GATNNNNATC	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	61, 569
BsgI	GTGCAG	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	514
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	3 cut(s)	144, 168, 491
BsiHKCI	CYCGRG	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	122, 445
BsnI	GGCC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	144, 168, 491
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	408, 511, 515
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	286
BspDI	ATCGAT	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	408
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	61, 569
BssMI	GATC	3 cut(s)	408, 511, 515
BssSI	CACGAG	3 cut(s)	143, 376, 474
Bst2BI	CACGAG	3 cut(s)	143, 376, 474
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	186, 584
BstDEI	CTNAG	2 cut(s)	294, 368
BstF5I	GGATG	2 cut(s)	511, 534
BstKTI	GATC	3 cut(s)	411, 514, 518
BstMAI	GTCTC	2 cut(s)	122, 445
BstMBI	GATC	3 cut(s)	408, 511, 515
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 583
Bsu15I	ATCGAT	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	514
BtsCI	GGATG	2 cut(s)	511, 534
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
Cac8I	GCNNGC	2 cut(s)	186, 584
Cfr13I	GGNCC	2 cut(s)	187, 277
ClaI	ATCGAT	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	85, 244
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	6 cut(s)	115, 166, 176, 188, 417, 489
CviKI_1	RGCY	6 cut(s)	115, 166, 176, 188, 417, 489
CviQI	GTAC	2 cut(s)	85, 244
DdeI	CTNAG	2 cut(s)	294, 368
DpnI	GATC	3 cut(s)	410, 513, 517
DpnII	GATC	3 cut(s)	408, 511, 515
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	2 cut(s)	166, 489
Eco24I	GRGCYC	2 cut(s)	168, 491
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	2 cut(s)	166, 489
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	2 cut(s)	166, 489
EcoT38I	GRGCYC	2 cut(s)	168, 491
FaeI	CATG	1 cut(s)	239
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	1 cut(s)	235
FokI	GGATG	2 cut(s)	518, 541
FriOI	GRGCYC	2 cut(s)	168, 491
FspBI	CTAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	261, 558
Hpy188III	TCNNGA	2 cut(s)	332, 376
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	21, 34, 307
HpyCH4V	TGCA	4 cut(s)	53, 184, 307, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 583
HpyF3I	CTNAG	2 cut(s)	294, 368
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	408, 511, 515
LmnI	GCTCC	1 cut(s)	486
LpnPI	CCDG	4 cut(s)	42, 170, 547, 582
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	125
MalI	GATC	3 cut(s)	410, 513, 517
MboI	GATC	3 cut(s)	408, 511, 515
MboII	GAAGA	2 cut(s)	71, 281
MhlI	GDGCHC	3 cut(s)	144, 168, 491
MluCI	AATT	4 cut(s)	89, 210, 363, 498
MmeI	TCCRAC	2 cut(s)	239, 255
MnlI	CCTC	5 cut(s)	30, 243, 291, 470, 496
MseI	TTAA	5 cut(s)	11, 251, 302, 497, 589
MslI	CAYNNNNRTG	2 cut(s)	380, 527
MwoI	GCNNNNNNNGC	2 cut(s)	574, 583
NdeII	GATC	3 cut(s)	408, 511, 515
NlaIII	CATG	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	137
Ple19I	CGATCG	1 cut(s)	411
Psp124BI	GAGCTC	2 cut(s)	168, 491
PspPI	GGNCC	2 cut(s)	187, 277
PspXI	VCTCGAGB	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	411
RsaI	GTAC	2 cut(s)	86, 245
RsaNI	GTAC	2 cut(s)	85, 244
RseI	CAYNNNNRTG	2 cut(s)	380, 527
SacI	GAGCTC	2 cut(s)	168, 491
SaqAI	TTAA	5 cut(s)	11, 251, 302, 497, 589
Sau3AI	GATC	3 cut(s)	408, 511, 515
Sau96I	GGNCC	2 cut(s)	187, 277
SduI	GDGCHC	3 cut(s)	144, 168, 491
SetI	ASST	9 cut(s)	45, 126, 168, 282, 291, 302, 419, 481, 491
SfaNI	GCATC	1 cut(s)	496
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	277
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	380, 527
SmlI	CTYRAG	3 cut(s)	137, 330, 341
SmoI	CTYRAG	3 cut(s)	137, 330, 341
Sse9I	AATT	4 cut(s)	89, 210, 363, 498
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	2 cut(s)	168, 491
TaqI	TCGA	2 cut(s)	138, 514
TasI	AATT	4 cut(s)	89, 210, 363, 498
TatI	WGTACW	2 cut(s)	84, 243
Tru1I	TTAA	5 cut(s)	11, 251, 302, 497, 589
Tru9I	TTAA	5 cut(s)	11, 251, 302, 497, 589
TscAI	CASTG	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	363
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.