Rw7G001550

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008455
Physical Location & Seq
Forward (+)
1289980 .. 1293585
3606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001550.1

Sequence Viewer

Length: 918 bp
ATGCAAGCTCATTTTGAGAACATTCAAAGCATTGCTGATACAACAACGCTGCCTCACGTGATGCACTATTTGAGTAGTCGGATAGCAGAAGAGTTAGATACTACTTATATCACCGAAAGGTTGATGCAAATGAAGGGGAAGTCTCCAGAGAAACTTGAATTGTGGGATAGATTAAAAGTTCTAAGCTTCACAAGAATGGTGTTGTCGTTGTGGTCGATGACGATGCTTAGCTTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATACATTGATACTGCACGTGGTTTTGGAAGCTCTCTTATAGTTGAGGATGCTGAACTCATTGATAGGGATGACCAGCAGAAGTTTCTAGCAAGTTCTGATTATCTCTCCAGTTATGGCATGCCTGCTTTAATTTCGAATATCCAGGCAGCAGCAGCAGAAGTTCTTAATGGAAAGCAGCTAACTGAACGGTTCAATGCCACGGTTCTCCATGATACTATTATGCAAATGCTTGACAAGTTCATGAGCACAGGAAGTCCCCATCACTGGGTGAACTACTTGATGCCAGAGGATGCTCGTTGGGTTGAACTAGCGACTGCCTTCAGCAGTGATAGCACAGTTCTTCCGGATGTCACCAAATTTGAACAACTTATGCTGGAGACGCGGTCAGTAATATCAAGTGGTGAATTTGGTAGTATTGCTCAGATGGCACTGAGAGCAGTGGTGGATACAGTGGTAGTGGATATGGGCGCTCAATCTGGACGTGATCTAGCGTCCGGAACGCCCCTTGCCAAAGTTTTGGCAAGAGTTGCACAGATGGGTCCCACACTCCTTGGAGAATCAAGCAAATTCGTACAGATCATTCTAAATGTACCAGAAGTTGAGCTCTTTTTTACTCTCATCTATTCACATATGCAAATCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Peroxin-3

Protein Analysis

305

Amino Acids

34.18

Weight (kDa)

5.17

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peroxin-3 PF04882 50 - 300 3.5e-21 Peroxin-3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 655
AccIII TCCGGA 2 cut(s) 616, 767
AciI CCGC 1 cut(s) 655
AcsI RAATTY 3 cut(s) 629, 677, 839
AcuI CTGAAG 1 cut(s) 577
AcvI CACGTG 2 cut(s) 58, 290
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 2 cut(s) 846, 864
AfiI CCNNNNNNNGG 2 cut(s) 537, 538
AgsI TTSAA 6 cut(s) 26, 158, 248, 466, 578, 635
AjiI CACGTC 1 cut(s) 755
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 6 cut(s) 8, 186, 231, 303, 451, 877
AluI AGCT 6 cut(s) 8, 186, 231, 303, 451, 877
Alw21I GWGCWC 2 cut(s) 521, 879
Alw26I GTCTC 3 cut(s) 147, 259, 644
Aor13HI TCCGGA 2 cut(s) 616, 767
ApeKI GCWGC 5 cut(s) 49, 419, 422, 425, 448
ApoI RAATTY 3 cut(s) 629, 677, 839
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 1 cut(s) 812
AsuHPI GGTGA 4 cut(s) 103, 553, 616, 686
AsuII TTCGAA 1 cut(s) 407
AvaII GGWCC 1 cut(s) 812
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BanII GRGCYC 1 cut(s) 879
BbrPI CACGTG 2 cut(s) 58, 290
Bbv12I GWGCWC 2 cut(s) 521, 879
BbvI GCAGC 5 cut(s) 36, 431, 434, 437, 460
BccI CCATC 3 cut(s) 540, 691, 802
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 416
BciVI GTATCC 1 cut(s) 712
BcoDI GTCTC 3 cut(s) 147, 259, 644
BfaI CTAG 3 cut(s) 359, 581, 761
BfoI RGCGCY 1 cut(s) 744
BfuI GTATCC 1 cut(s) 712
BisI GCNGC 5 cut(s) 50, 420, 423, 426, 449
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 5 cut(s) 51, 421, 424, 427, 450
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 812
BmgBI CACGTC 1 cut(s) 755
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 2 cut(s) 813, 814
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 6 cut(s) 51, 114, 213, 310, 543, 553
BmuI ACTGGG 1 cut(s) 547
BpmI CTGGAG 3 cut(s) 129, 364, 668
Bpu1102I GCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 407
BsaAI YACGTR 2 cut(s) 58, 290
BsaJI CCNNGG 2 cut(s) 471, 823
BsaWI WCCGGW 2 cut(s) 616, 767
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 538
Bse1I ACTGG 2 cut(s) 381, 542
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 2 cut(s) 616, 767
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 471, 823
BseGI GGATG 4 cut(s) 325, 346, 568, 625
BseLI CCNNNNNNNGG 2 cut(s) 537, 538
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 695, 707
BseNI ACTGG 2 cut(s) 381, 542
BseXI GCAGC 5 cut(s) 36, 431, 434, 437, 460
BsgI GTGCAG 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 655
BsiHKAI GWGCWC 2 cut(s) 521, 879
BsiSI CCGG 2 cut(s) 617, 768
BslFI GGGAC 2 cut(s) 513, 798
BslI CCNNNNNNNGG 2 cut(s) 537, 538
BsmAI GTCTC 3 cut(s) 147, 259, 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 2 cut(s) 513, 798
Bsp119I TTCGAA 1 cut(s) 407
Bsp1286I GDGCHC 2 cut(s) 521, 879
Bsp13I TCCGGA 2 cut(s) 616, 767
Bsp143I GATC 2 cut(s) 757, 849
Bsp1720I GCTNAGC 1 cut(s) 227
BspACI CCGC 1 cut(s) 655
BspCNI CTCAG 2 cut(s) 696, 706
BspEI TCCGGA 2 cut(s) 616, 767
BspFNI CGCG 1 cut(s) 655
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 813, 814
BspT104I TTCGAA 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 381, 542
BssECI CCNNGG 2 cut(s) 471, 823
BssMI GATC 2 cut(s) 757, 849
BssT1I CCWWGG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 4 cut(s) 462, 475, 610, 724
Bst6I CTCTTC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 2 cut(s) 58, 290
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 6, 392, 396
BstDEI CTNAG 4 cut(s) 182, 227, 693, 704
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 4 cut(s) 325, 346, 568, 625
BstFNI CGCG 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 2 cut(s) 760, 852
BstMAI GTCTC 3 cut(s) 147, 259, 644
BstMBI GATC 2 cut(s) 757, 849
BstMWI GCNNNNNNNGC 6 cut(s) 425, 603, 652, 698, 707, 800
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 414
BstUI CGCG 1 cut(s) 655
BstV1I GCAGC 5 cut(s) 36, 431, 434, 437, 460
BstXI CCANNNNNNTGG 1 cut(s) 790
BsuI GTATCC 1 cut(s) 712
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 4 cut(s) 325, 346, 568, 625
BtsI GCAGTG 2 cut(s) 604, 717
BtsIMutI CAGTG 5 cut(s) 535, 604, 701, 717, 729
Cac8I GCNNGC 3 cut(s) 6, 392, 396
CciI TCATGA 1 cut(s) 513
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 1 cut(s) 812
CseI GACGC 2 cut(s) 661, 753
Csp6I GTAC 2 cut(s) 845, 863
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 3 cut(s) 391, 482, 514
CviJI RGCY 6 cut(s) 8, 186, 231, 303, 451, 877
CviKI_1 RGCY 6 cut(s) 8, 186, 231, 303, 451, 877
CviQI GTAC 2 cut(s) 845, 863
DdeI CTNAG 4 cut(s) 182, 227, 693, 704
DpnI GATC 2 cut(s) 759, 851
DpnII GATC 2 cut(s) 757, 849
DraIII CACNNNGTG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 879
Eco47I GGWCC 1 cut(s) 812
Eco53kI GAGCTC 1 cut(s) 877
Eco57I CTGAAG 1 cut(s) 577
Eco72I CACGTG 2 cut(s) 58, 290
EcoICRI GAGCTC 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 879
ErhI CCWWGG 1 cut(s) 823
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 3 cut(s) 394, 485, 517
FaqI GGGAC 2 cut(s) 513, 798
FatI CATG 3 cut(s) 390, 481, 513
FauNDI CATATG 1 cut(s) 903
Fnu4HI GCNGC 5 cut(s) 50, 420, 423, 426, 449
FokI GGATG 4 cut(s) 332, 353, 575, 632
FriOI GRGCYC 1 cut(s) 879
Fsp4HI GCNGC 5 cut(s) 50, 420, 423, 426, 449
FspBI CTAG 3 cut(s) 359, 581, 761
GlaI GCGC 1 cut(s) 742
GluI GCNGC 5 cut(s) 50, 420, 423, 426, 449
GsuI CTGGAG 3 cut(s) 129, 364, 668
HaeII RGCGCY 1 cut(s) 744
HapII CCGG 2 cut(s) 617, 768
HgaI GACGC 2 cut(s) 661, 753
HhaI GCGC 1 cut(s) 743
Hin1II CATG 3 cut(s) 394, 485, 517
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 1 cut(s) 830
HpaII CCGG 2 cut(s) 617, 768
HphI GGTGA 4 cut(s) 103, 553, 616, 686
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 3 cut(s) 81, 370, 696
Hpy188III TCNNGA 5 cut(s) 146, 514, 617, 750, 768
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 2 cut(s) 127, 601
HpyCH4III ACNGT 4 cut(s) 462, 475, 610, 724
HpyCH4IV ACGT 3 cut(s) 57, 289, 754
HpyCH4V TGCA 7 cut(s) 4, 64, 127, 287, 496, 803, 907
HpyF10VI GCNNNNNNNGC 6 cut(s) 425, 603, 652, 698, 707, 800
HpyF3I CTNAG 4 cut(s) 182, 227, 693, 704
HpySE526I ACGT 3 cut(s) 57, 289, 754
Hsp92II CATG 3 cut(s) 394, 485, 517
HspAI GCGC 1 cut(s) 741
KflI GGGWCCC 1 cut(s) 812
Kpn2I TCCGGA 2 cut(s) 616, 767
Kzo9I GATC 2 cut(s) 757, 849
Lsp1109I GCAGC 5 cut(s) 36, 431, 434, 437, 460
LweI GCATC 6 cut(s) 51, 114, 213, 310, 543, 553
MaeI CTAG 3 cut(s) 359, 581, 761
MaeII ACGT 3 cut(s) 57, 289, 754
MaeIII GTNAC 1 cut(s) 622
MalI GATC 2 cut(s) 759, 851
MboI GATC 2 cut(s) 757, 849
MboII GAAGA 2 cut(s) 101, 605
MhlI GDGCHC 2 cut(s) 521, 879
MluCI AATT 5 cut(s) 158, 402, 629, 677, 839
MmeI TCCRAC 1 cut(s) 59
MnlI CCTC 3 cut(s) 63, 310, 553
MroI TCCGGA 2 cut(s) 616, 767
MseI TTAA 3 cut(s) 173, 401, 438
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 2 cut(s) 617, 768
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 1 cut(s) 655
MwoI GCNNNNNNNGC 6 cut(s) 425, 603, 652, 698, 707, 800
NdeI CATATG 1 cut(s) 903
NdeII GATC 2 cut(s) 757, 849
NlaIII CATG 3 cut(s) 394, 485, 517
NlaIV GGNNCC 2 cut(s) 813, 814
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 1 cut(s) 394
NspV TTCGAA 1 cut(s) 407
PaeI GCATGC 1 cut(s) 394
PagI TCATGA 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PfeI GAWTC 1 cut(s) 830
PflFI GACNNNGTC 1 cut(s) 655
PkrI GCNGC 5 cut(s) 51, 421, 424, 427, 450
PmaCI CACGTG 2 cut(s) 58, 290
PmlI CACGTG 2 cut(s) 58, 290
Ppu21I YACGTR 2 cut(s) 58, 290
PpuMI RGGWCCY 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 414
PspCI CACGTG 2 cut(s) 58, 290
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 813, 814
PspPI GGNCC 1 cut(s) 812
PspPPI RGGWCCY 1 cut(s) 812
PsyI GACNNNGTC 1 cut(s) 655
RsaI GTAC 2 cut(s) 846, 864
RsaNI GTAC 2 cut(s) 845, 863
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 879
SaqAI TTAA 3 cut(s) 173, 401, 438
SatI GCNGC 5 cut(s) 50, 420, 423, 426, 449
Sau3AI GATC 2 cut(s) 757, 849
Sau96I GGNCC 1 cut(s) 812
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 2 cut(s) 521, 879
SfaNI GCATC 6 cut(s) 51, 114, 213, 310, 543, 553
SfuI TTCGAA 1 cut(s) 407
SinI GGWCC 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 194
SphI GCATGC 1 cut(s) 394
Sse9I AATT 5 cut(s) 158, 402, 629, 677, 839
SsiI CCGC 1 cut(s) 655
SspMI CTAG 3 cut(s) 359, 581, 761
SstI GAGCTC 1 cut(s) 879
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 4 cut(s) 462, 475, 610, 724
TaiI ACGT 3 cut(s) 60, 292, 757
TaqI TCGA 2 cut(s) 215, 407
TasI AATT 5 cut(s) 158, 402, 629, 677, 839
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 3 cut(s) 173, 401, 438
Tru9I TTAA 3 cut(s) 173, 401, 438
TscAI CASTG 5 cut(s) 542, 604, 708, 717, 729
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 5 cut(s) 49, 419, 422, 425, 448
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 2 cut(s) 146, 502
TspRI CASTG 5 cut(s) 542, 604, 708, 717, 729
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 812
XapI RAATTY 3 cut(s) 629, 677, 839
XceI RCATGY 1 cut(s) 394
XspI CTAG 3 cut(s) 359, 581, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.