Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008455

Physical Location & Seq

Genomic Coordinates Reverse (-)

67485290 .. 67488313

Gene Structure 3024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGCTTTCTTTGAGGGGTTTTTGGAGGAGGCATAGGAGGAAGGTGCTTGTTGCAACTGGTGTGTTAGGAGGTGGATATCTACTGTATAAACTATATAATGCTCACAGACAGAGGCTTACTGACCTGGAGGCCGAACTCGCCCGTGAACAAGAGAGCAGTGATGAGCTCCTTAAGGCTAAAATGCAAGCTCATTTTGAGAGCATTCAAAGCATTGCTGATACAACAACGCTGCCTCACGTGATGCACTATTTGAGTAGTCGGATAGCAGAAGAGTTAGATACTACTTATATCACCGAAAGGTTAATGCAAATGAAGGGGAAGTCTCCAGAGAAACTTGAATTGTGGGATAGATTAAAAGTTCTAAGCTTCACAAGAATGGTCTTGTCGTTGTGGGCGATGACGATGCTTAGCCTATATATTAGAGTTCAAGTCAATATATTAGGGAGACATTTATACATTGATACTGCACGTGGTTTTGGAAGCTCTCTTATAGTTGAGGATGCTGAGCTCATTGATAGGGATGACCAGCAGAAGTTTCTAGCAAGTTCTGATTATCTCTCCAGTTATGGCATGCCTGCTTTAATTTCGAATATCCAGGCAGCAGCAGCAGAAGTTCTTAATGGAAAGCAGCTAACTGAACGGTTCAATACCACGGTTCTCCATGATACTATTATGCAAATACTTGACAAGTTCATGAGCACAGGAAGTCCCCATCAGTGGGTGAACTACTTGATGCCTGAGGATGCTCGTTGGGTGGAACTAGCAACAGCCTTCAGCAGTGATAGCACAGTCCTTCCGGATGTCACCAAATTTGAACAGCTTATGCTGGAGACGCGGTCAGTAATATCAAGTGGTGAATTTGGTAGTATTGCTCAGATGGCATTGAGAGCAGTGGTGGATACAGTGGTAGTGGATATGGGCGCTCAATCTGGAGGTGATCTAGCGTCCGGAACGCCCCTTGCCAAAGTTTTGGCAAGAGTTGCACAGATGGGTCCCATATTCCTTGGAGAATCAAGCAAATTCATACAGATCATTCTAAATGTACCAGAAGTTGAGCTCTTTTTTACTCTCATCTATTCACATATGCAAATCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Peroxin-3

Protein Analysis

366

Amino Acids

41.09

Weight (kDa)

5.76

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peroxin-3	PF04882	7 - 108	3e-07	Peroxin-3
Peroxin-3	PF04882	110 - 360	4.5e-21	Peroxin-3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48635 AT1G48635 AT3G18160 AT3G18160 AT3G18160
fragaria_vesca	FvH4_5g17050 FvH4_5g17050
malus_domestica	MD00G1160600.v1.1 MD14G1233700.v1.1
prunus_persica	Prupe.5G229900_v2.0.a1
pyrus_communis	pycom06g19980 pycom14g19470
rosa_chinensis	RchiOBHm_Chr7g0178801
rosa_laevigata	RLG00000005415
rosa_multiflora	Rmu_sc0015029.1_g000004 Rmu_sc0025325.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274600
rosa_rugosa	Rorug06G0419800
rosa_samantha	Rh7AG019100 Rh7BG018400 Rh7CG019200 Rh7DG019000
rosa_wichuraiana	Rw7G001550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	835
AccIII	TCCGGA	2 cut(s)	796, 947
AciI	CCGC	1 cut(s)	835
AcsI	RAATTY	3 cut(s)	809, 857, 1019
AcuI	CTGAAG	1 cut(s)	757
AcvI	CACGTG	2 cut(s)	238, 470
AfaI	GTAC	1 cut(s)	1044
AfiI	CCNNNNNNNGG	2 cut(s)	717, 718
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	206, 338, 428, 646, 815
AjnI	CCWGG	2 cut(s)	123, 594
AluBI	AGCT	8 cut(s)	166, 188, 366, 483, 508, 631, 820, 1057
AluI	AGCT	8 cut(s)	166, 188, 366, 483, 508, 631, 820, 1057
Alw21I	GWGCWC	4 cut(s)	168, 510, 701, 1059
Alw26I	GTCTC	3 cut(s)	327, 439, 824
Aor13HI	TCCGGA	2 cut(s)	796, 947
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	5 cut(s)	229, 599, 602, 605, 628
ApoI	RAATTY	3 cut(s)	809, 857, 1019
AspLEI	GCGC	1 cut(s)	923
AspS9I	GGNCC	1 cut(s)	992
AsuHPI	GGTGA	5 cut(s)	283, 733, 796, 866, 947
AsuII	TTCGAA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	992
AxyI	CCTNAGG	1 cut(s)	738
BaeI	ACNNNNGTAYC	2 cut(s)	891, 924
BanII	GRGCYC	3 cut(s)	168, 510, 1059
BbrPI	CACGTG	2 cut(s)	238, 470
Bbv12I	GWGCWC	4 cut(s)	168, 510, 701, 1059
BbvI	GCAGC	5 cut(s)	216, 611, 614, 617, 640
BccI	CCATC	3 cut(s)	720, 871, 982
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BciT130I	CCWGG	2 cut(s)	125, 596
BciVI	GTATCC	1 cut(s)	892
BcoDI	GTCTC	3 cut(s)	327, 439, 824
BfaI	CTAG	3 cut(s)	539, 761, 941
BfoI	RGCGCY	1 cut(s)	924
BfrI	CTTAAG	1 cut(s)	170
BfuI	GTATCC	1 cut(s)	892
BisI	GCNGC	5 cut(s)	230, 600, 603, 606, 629
BlpI	GCTNAGC	2 cut(s)	407, 504
BlsI	GCNGC	5 cut(s)	231, 601, 604, 607, 630
Bme1390I	CCNGG	2 cut(s)	125, 596
Bme18I	GGWCC	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	992
BmiI	GGNNCC	2 cut(s)	993, 994
BmrFI	CCNGG	2 cut(s)	125, 596
BmsI	GCATC	5 cut(s)	231, 393, 490, 723, 733
BpmI	CTGGAG	5 cut(s)	146, 309, 544, 848, 951
Bpu1102I	GCTNAGC	2 cut(s)	407, 504
Bpu14I	TTCGAA	1 cut(s)	587
BsaAI	YACGTR	2 cut(s)	238, 470
BsaJI	CCNNGG	2 cut(s)	651, 1003
BsaWI	WCCGGW	2 cut(s)	796, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	2 cut(s)	717, 718
Bse1I	ACTGG	2 cut(s)	61, 561
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	210
BseAI	TCCGGA	2 cut(s)	796, 947
BseBI	CCWGG	2 cut(s)	125, 596
BseDI	CCNNGG	2 cut(s)	651, 1003
BseGI	GGATG	4 cut(s)	505, 526, 748, 805
BseLI	CCNNNNNNNGG	2 cut(s)	717, 718
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	495, 729, 887
BseNI	ACTGG	2 cut(s)	61, 561
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	5 cut(s)	216, 611, 614, 617, 640
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	835
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	4 cut(s)	168, 510, 701, 1059
BsiSI	CCGG	2 cut(s)	797, 948
BslFI	GGGAC	2 cut(s)	693, 978
BslI	CCNNNNNNNGG	2 cut(s)	717, 718
BsmAI	GTCTC	3 cut(s)	327, 439, 824
BsmBI	CGTCTC	1 cut(s)	824
BsmFI	GGGAC	2 cut(s)	693, 978
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	587
Bsp1286I	GDGCHC	4 cut(s)	168, 510, 701, 1059
Bsp13I	TCCGGA	2 cut(s)	796, 947
Bsp143I	GATC	2 cut(s)	937, 1029
Bsp1720I	GCTNAGC	2 cut(s)	407, 504
BspACI	CCGC	1 cut(s)	835
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	3 cut(s)	496, 730, 886
BspEI	TCCGGA	2 cut(s)	796, 947
BspFNI	CGCG	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	2 cut(s)	993, 994
BspT104I	TTCGAA	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	61, 561
BssECI	CCNNGG	2 cut(s)	651, 1003
BssMI	GATC	2 cut(s)	937, 1029
BssT1I	CCWWGG	1 cut(s)	1003
Bst2UI	CCWGG	2 cut(s)	125, 596
Bst4CI	ACNGT	5 cut(s)	84, 642, 655, 790, 904
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBAI	YACGTR	2 cut(s)	238, 470
BstBI	TTCGAA	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	186, 572, 576
BstDEI	CTNAG	5 cut(s)	362, 407, 504, 738, 873
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	4 cut(s)	505, 526, 748, 805
BstFNI	CGCG	1 cut(s)	835
BstH2I	RGCGCY	1 cut(s)	924
BstHHI	GCGC	1 cut(s)	923
BstKTI	GATC	2 cut(s)	940, 1032
BstMAI	GTCTC	3 cut(s)	327, 439, 824
BstMBI	GATC	2 cut(s)	937, 1029
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 207, 605, 783, 832, 878, 887, 980
BstNI	CCWGG	2 cut(s)	125, 596
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	123, 594
BstUI	CGCG	1 cut(s)	835
BstV1I	GCAGC	5 cut(s)	216, 611, 614, 617, 640
BstXI	CCANNNNNNTGG	1 cut(s)	970
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	892
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	651
BtgZI	GCGATG	1 cut(s)	410
BtsCI	GGATG	4 cut(s)	505, 526, 748, 805
BtsI	GCAGTG	3 cut(s)	163, 784, 897
BtsIMutI	CAGTG	5 cut(s)	163, 722, 784, 897, 909
Cac8I	GCNNGC	3 cut(s)	186, 572, 576
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	1 cut(s)	923
Cfr13I	GGNCC	1 cut(s)	992
CseI	GACGC	2 cut(s)	841, 933
Csp6I	GTAC	1 cut(s)	1043
CviAII	CATG	3 cut(s)	571, 662, 694
CviQI	GTAC	1 cut(s)	1043
DdeI	CTNAG	5 cut(s)	362, 407, 504, 738, 873
DpnI	GATC	2 cut(s)	939, 1031
DpnII	GATC	2 cut(s)	937, 1029
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Ecl136II	GAGCTC	3 cut(s)	166, 508, 1057
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	3 cut(s)	168, 510, 1059
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	992
Eco53kI	GAGCTC	3 cut(s)	166, 508, 1057
Eco57I	CTGAAG	1 cut(s)	757
Eco72I	CACGTG	2 cut(s)	238, 470
Eco81I	CCTNAGG	1 cut(s)	738
EcoICRI	GAGCTC	3 cut(s)	166, 508, 1057
EcoO109I	RGGNCCY	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	123, 594
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT38I	GRGCYC	3 cut(s)	168, 510, 1059
ErhI	CCWWGG	1 cut(s)	1003
Esp3I	CGTCTC	1 cut(s)	824
FaeI	CATG	3 cut(s)	574, 665, 697
FaqI	GGGAC	2 cut(s)	693, 978
FatI	CATG	3 cut(s)	570, 661, 693
FauNDI	CATATG	1 cut(s)	1083
Fnu4HI	GCNGC	5 cut(s)	230, 600, 603, 606, 629
FokI	GGATG	4 cut(s)	512, 533, 755, 812
FriOI	GRGCYC	3 cut(s)	168, 510, 1059
Fsp4HI	GCNGC	5 cut(s)	230, 600, 603, 606, 629
FspBI	CTAG	3 cut(s)	539, 761, 941
GlaI	GCGC	1 cut(s)	922
GluI	GCNGC	5 cut(s)	230, 600, 603, 606, 629
GsuI	CTGGAG	5 cut(s)	146, 309, 544, 848, 951
HaeII	RGCGCY	1 cut(s)	924
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	797, 948
HgaI	GACGC	2 cut(s)	841, 933
HhaI	GCGC	1 cut(s)	923
Hin1II	CATG	3 cut(s)	574, 665, 697
Hin6I	GCGC	1 cut(s)	921
HinP1I	GCGC	1 cut(s)	921
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	1 cut(s)	1010
HpaII	CCGG	2 cut(s)	797, 948
HphI	GGTGA	5 cut(s)	283, 733, 796, 866, 947
Hpy166II	GTNNAC	2 cut(s)	146, 724
Hpy188I	TCNGA	3 cut(s)	261, 550, 876
Hpy188III	TCNNGA	5 cut(s)	326, 694, 797, 930, 948
Hpy8I	GTNNAC	2 cut(s)	146, 724
HpyAV	CCTTC	4 cut(s)	34, 307, 781, 803
HpyCH4III	ACNGT	5 cut(s)	84, 642, 655, 790, 904
HpyCH4IV	ACGT	2 cut(s)	237, 469
HpyCH4V	TGCA	8 cut(s)	53, 184, 244, 307, 467, 676, 983, 1087
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 207, 605, 783, 832, 878, 887, 980
HpyF3I	CTNAG	5 cut(s)	362, 407, 504, 738, 873
HpySE526I	ACGT	2 cut(s)	237, 469
Hsp92II	CATG	3 cut(s)	574, 665, 697
HspAI	GCGC	1 cut(s)	921
KflI	GGGWCCC	1 cut(s)	992
Kpn2I	TCCGGA	2 cut(s)	796, 947
Kzo9I	GATC	2 cut(s)	937, 1029
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	5 cut(s)	216, 611, 614, 617, 640
LweI	GCATC	5 cut(s)	231, 393, 490, 723, 733
MaeI	CTAG	3 cut(s)	539, 761, 941
MaeII	ACGT	2 cut(s)	237, 469
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	2 cut(s)	939, 1031
MboI	GATC	2 cut(s)	937, 1029
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	4 cut(s)	168, 510, 701, 1059
MluCI	AATT	5 cut(s)	338, 582, 809, 857, 1019
MmeI	TCCRAC	1 cut(s)	239
MroI	TCCGGA	2 cut(s)	796, 947
MseI	TTAA	5 cut(s)	171, 302, 353, 581, 618
MslI	CAYNNNNRTG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	797, 948
MspR9I	CCNGG	2 cut(s)	125, 596
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	125, 596
MvnI	CGCG	1 cut(s)	835
MwoI	GCNNNNNNNGC	8 cut(s)	137, 207, 605, 783, 832, 878, 887, 980
NdeI	CATATG	1 cut(s)	1083
NdeII	GATC	2 cut(s)	937, 1029
NlaIII	CATG	3 cut(s)	574, 665, 697
NlaIV	GGNNCC	2 cut(s)	993, 994
NmuCI	GTSAC	1 cut(s)	802
NspI	RCATGY	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	587
PaeI	GCATGC	1 cut(s)	574
PagI	TCATGA	1 cut(s)	693
PcsI	WCGNNNNNNNCGW	1 cut(s)	392
PctI	GAATGC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	1010
PflFI	GACNNNGTC	1 cut(s)	835
PkrI	GCNGC	5 cut(s)	231, 601, 604, 607, 630
PmaCI	CACGTG	2 cut(s)	238, 470
PmlI	CACGTG	2 cut(s)	238, 470
Ppu21I	YACGTR	2 cut(s)	238, 470
PpuMI	RGGWCCY	1 cut(s)	992
Psp124BI	GAGCTC	3 cut(s)	168, 510, 1059
Psp5II	RGGWCCY	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	123, 594
PspCI	CACGTG	2 cut(s)	238, 470
PspGI	CCWGG	2 cut(s)	123, 594
PspN4I	GGNNCC	2 cut(s)	993, 994
PspPI	GGNCC	1 cut(s)	992
PspPPI	RGGWCCY	1 cut(s)	992
PsyI	GACNNNGTC	1 cut(s)	835
RsaI	GTAC	1 cut(s)	1044
RsaNI	GTAC	1 cut(s)	1043
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	3 cut(s)	168, 510, 1059
SaqAI	TTAA	5 cut(s)	171, 302, 353, 581, 618
SatI	GCNGC	5 cut(s)	230, 600, 603, 606, 629
Sau3AI	GATC	2 cut(s)	937, 1029
Sau96I	GGNCC	1 cut(s)	992
ScrFI	CCNGG	2 cut(s)	125, 596
SduI	GDGCHC	4 cut(s)	168, 510, 701, 1059
SfaNI	GCATC	5 cut(s)	231, 393, 490, 723, 733
SfuI	TTCGAA	1 cut(s)	587
SinI	GGWCC	1 cut(s)	992
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SphI	GCATGC	1 cut(s)	574
Sse9I	AATT	5 cut(s)	338, 582, 809, 857, 1019
SsiI	CCGC	1 cut(s)	835
SspMI	CTAG	3 cut(s)	539, 761, 941
SstI	GAGCTC	3 cut(s)	168, 510, 1059
StyD4I	CCNGG	2 cut(s)	123, 594
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	5 cut(s)	84, 642, 655, 790, 904
TaiI	ACGT	2 cut(s)	240, 472
TaqI	TCGA	1 cut(s)	587
TasI	AATT	5 cut(s)	338, 582, 809, 857, 1019
TfiI	GAWTC	1 cut(s)	1010
Tru1I	TTAA	5 cut(s)	171, 302, 353, 581, 618
Tru9I	TTAA	5 cut(s)	171, 302, 353, 581, 618
TscAI	CASTG	5 cut(s)	163, 722, 784, 897, 909
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	5 cut(s)	229, 599, 602, 605, 628
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	3 cut(s)	326, 682, 1012
TspRI	CASTG	5 cut(s)	163, 722, 784, 897, 909
Tth111I	GACNNNGTC	1 cut(s)	835
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	992
XapI	RAATTY	3 cut(s)	809, 857, 1019
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	3 cut(s)	539, 761, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.